Wall clock time and date at job start Tue Mar 31 2020 23:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 120.00231 * 2 1 4 4 O 1.21560 * 119.99994 * 0.27720 * 3 2 1 5 5 C 1.47782 * 119.99819 * 179.97438 * 3 2 1 6 6 C 1.39543 * 120.12403 * 359.72256 * 5 3 2 7 7 C 1.38548 * 119.79128 * 179.79028 * 6 5 3 8 8 N 1.39999 * 119.98218 * 180.23251 * 7 6 5 9 9 C 1.34771 * 120.00400 * 145.15346 * 8 7 6 10 10 O 1.21287 * 120.00146 * 4.60434 * 9 8 7 11 11 C 1.50704 * 120.00245 * 184.61429 * 9 8 7 12 12 H 1.08994 * 109.46840 * 319.99438 * 11 9 8 13 13 N 1.46899 * 109.46813 * 199.99819 * 11 9 8 14 14 C 1.52997 * 109.47142 * 79.99457 * 11 9 8 15 15 C 1.53002 * 109.46835 * 185.00195 * 14 11 9 16 16 C 1.50698 * 109.46933 * 180.02562 * 15 14 11 17 17 H 1.08003 * 120.00301 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00302 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99716 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00391 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47218 * 59.99998 * 20 18 16 22 22 H 1.48509 * 109.47051 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.46920 * 299.99544 * 20 18 16 24 24 C 1.39017 * 120.03621 * 0.48498 * 7 6 5 25 25 C 1.38157 * 120.24866 * 359.74960 * 24 7 6 26 26 C 1.38181 * 120.20893 * 0.02562 * 25 24 7 27 27 Cl 1.73599 * 120.02077 * 179.97438 * 26 25 24 28 28 H 1.08999 * 109.46536 * 299.99904 * 1 2 3 29 29 H 1.09003 * 109.46763 * 59.99921 * 1 2 3 30 30 H 1.08994 * 109.47265 * 180.02562 * 1 2 3 31 31 H 0.97005 * 120.00014 * 180.02562 * 2 1 3 32 32 H 1.07997 * 120.10477 * 0.02562 * 6 5 3 33 33 H 0.97007 * 120.00127 * 325.14959 * 8 7 6 34 34 H 1.00904 * 110.99634 * 176.04869 * 13 11 9 35 35 H 1.00906 * 110.99971 * 299.99237 * 13 11 9 36 36 H 1.08997 * 109.47425 * 304.99980 * 14 11 9 37 37 H 1.09002 * 109.47044 * 65.00275 * 14 11 9 38 38 H 1.09006 * 109.46993 * 299.99929 * 15 14 11 39 39 H 1.09002 * 109.47239 * 60.00199 * 15 14 11 40 40 H 0.97000 * 120.00342 * 180.02562 * 19 18 16 41 41 H 1.07999 * 119.87352 * 179.71613 * 24 7 6 42 42 H 1.08002 * 119.89578 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5312 2.2199 0.0051 5 6 3.6168 1.1671 0.0006 6 6 4.3170 -0.0399 0.0070 7 6 5.7024 -0.0320 0.0031 8 7 6.4090 -1.2406 0.0045 9 6 7.5741 -1.3409 -0.6653 10 8 8.0528 -0.3629 -1.1995 11 6 8.2823 -2.6685 -0.7509 12 1 8.2115 -3.1805 0.2087 13 7 9.6957 -2.4488 -1.0856 14 6 7.6285 -3.5263 -1.8361 15 6 8.2648 -4.9177 -1.8386 16 6 7.6213 -5.7624 -2.9078 17 1 6.8366 -5.3484 -3.5238 18 6 8.0335 -7.0641 -3.0992 19 7 8.9887 -7.5684 -2.3489 20 14 7.2353 -8.1114 -4.4242 21 1 7.4381 -7.4725 -5.7492 22 1 7.8531 -9.4619 -4.4267 23 1 5.7809 -8.2324 -4.1502 24 6 6.3914 1.1754 0.0030 25 6 5.6997 2.3714 0.0016 26 6 4.3179 2.3754 0.0008 27 17 3.4538 3.8810 -0.0003 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.9500 -0.8401 -0.0004 32 1 3.7807 -0.9773 0.0111 33 1 6.0600 -2.0059 0.4877 34 1 10.2067 -3.3188 -1.0857 35 1 9.7880 -1.9752 -1.9718 36 1 6.5610 -3.6153 -1.6348 37 1 7.7770 -3.0571 -2.8087 38 1 9.3324 -4.8286 -2.0399 39 1 8.1164 -5.3869 -0.8660 40 1 9.2790 -8.4841 -2.4837 41 1 7.4714 1.1785 0.0046 42 1 6.2407 3.3061 0.0020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424090323.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:18 Heat of formation + Delta-G solvation = -74.880187 kcal Electronic energy + Delta-G solvation = -26118.157984 eV Core-core repulsion = 22122.877220 eV Total energy + Delta-G solvation = -3995.280764 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.90048 -40.92446 -39.33133 -37.56655 -37.04463 -35.74383 -35.68159 -34.82908 -32.62095 -31.66785 -30.83955 -28.10638 -27.91150 -25.86799 -24.92998 -23.45765 -22.54873 -21.73799 -21.08918 -19.57673 -19.03020 -18.21826 -17.80857 -17.39172 -17.01074 -16.62660 -16.38734 -16.21901 -16.14594 -15.76946 -15.41908 -15.39207 -14.78707 -14.70610 -14.54902 -14.46992 -14.03256 -13.69536 -13.60017 -13.45010 -13.18832 -12.96231 -12.88307 -12.66538 -12.64352 -12.52185 -12.25692 -11.78301 -11.68993 -11.29942 -11.25376 -10.88589 -10.62424 -10.53433 -10.32219 -10.06409 -9.65342 -9.24044 -8.19870 -6.29568 -0.41993 -0.04788 1.12190 1.39164 1.42091 1.43132 1.50604 1.73896 1.88895 2.17446 2.41264 2.60662 3.14492 3.52371 3.52931 3.63664 3.74387 4.03948 4.07547 4.13131 4.22480 4.28067 4.44396 4.58423 4.65205 4.66318 4.68915 4.85001 4.97046 4.98207 5.06435 5.11518 5.17450 5.36940 5.49806 5.65000 5.69251 5.83516 6.05562 6.23253 6.34186 6.45003 6.47749 6.86648 7.03213 7.14249 7.39750 8.90466 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013245 B = 0.002461 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.469174 B =11373.310465 C =13077.786510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.719 5.719 3 C 0.550 3.450 4 O -0.550 6.550 5 C -0.122 4.122 6 C -0.087 4.087 7 C 0.143 3.857 8 N -0.659 5.659 9 C 0.531 3.469 10 O -0.542 6.542 11 C 0.084 3.916 12 H 0.119 0.881 13 N -0.831 5.831 14 C -0.122 4.122 15 C 0.029 3.971 16 C -0.544 4.544 17 H 0.056 0.944 18 C 0.007 3.993 19 N -0.926 5.926 20 Si 0.954 3.046 21 H -0.273 1.273 22 H -0.286 1.286 23 H -0.266 1.266 24 C -0.092 4.092 25 C -0.098 4.098 26 C -0.017 4.017 27 Cl -0.047 7.047 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.111 0.889 31 H 0.415 0.585 32 H 0.173 0.827 33 H 0.431 0.569 34 H 0.355 0.645 35 H 0.345 0.655 36 H 0.073 0.927 37 H 0.044 0.956 38 H 0.001 0.999 39 H 0.006 0.994 40 H 0.263 0.737 41 H 0.144 0.856 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.710 14.456 8.579 21.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.372 5.372 3 C 0.337 3.663 4 O -0.428 6.428 5 C -0.127 4.127 6 C -0.108 4.108 7 C 0.048 3.952 8 N -0.306 5.306 9 C 0.319 3.681 10 O -0.418 6.418 11 C -0.031 4.031 12 H 0.137 0.863 13 N -0.363 5.363 14 C -0.162 4.162 15 C -0.008 4.008 16 C -0.582 4.582 17 H 0.074 0.926 18 C -0.192 4.192 19 N -0.566 5.566 20 Si 0.780 3.220 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.191 1.191 24 C -0.113 4.113 25 C -0.117 4.117 26 C -0.045 4.045 27 Cl -0.018 7.018 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.129 0.871 31 H 0.253 0.747 32 H 0.190 0.810 33 H 0.271 0.729 34 H 0.170 0.830 35 H 0.158 0.842 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.020 0.980 39 H 0.024 0.976 40 H 0.072 0.928 41 H 0.162 0.838 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -12.747 16.232 8.884 22.470 hybrid contribution -0.223 -1.903 -1.379 2.361 sum -12.970 14.329 7.505 20.734 Atomic orbital electron populations 1.21706 0.77954 1.04413 1.01732 1.45679 1.08722 1.08180 1.74570 1.18219 0.86887 0.84477 0.76744 1.90856 1.70110 1.31824 1.50036 1.19546 0.93404 0.92601 1.07154 1.21191 0.91811 0.98062 0.99743 1.17775 0.90933 0.86307 1.00185 1.43413 1.22342 1.13084 1.51788 1.20972 0.80091 0.90780 0.76258 1.90648 1.65316 1.39530 1.46274 1.21410 0.89525 0.90699 1.01465 0.86322 1.58778 1.08708 1.28964 1.39826 1.22154 1.00865 0.96161 0.97008 1.18971 0.95096 0.90949 0.95761 1.21610 1.20313 0.97653 1.18619 0.92610 1.25819 0.95603 0.99448 0.98319 1.70042 1.29886 1.15823 1.40889 0.85660 0.79092 0.77673 0.79598 1.19854 1.21130 1.19055 1.21530 1.01724 0.90644 0.97400 1.21098 0.91076 0.99780 0.99781 1.21150 0.92665 0.87518 1.03181 1.98399 1.76910 1.30158 1.96315 0.92640 0.93007 0.87097 0.74730 0.80981 0.72902 0.82985 0.84233 0.90880 0.93736 0.98035 0.97602 0.92797 0.83840 0.82528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.94 10.70 127.77 1.37 2.31 16 2 N -0.72 -9.71 5.66 -487.54 -2.76 -12.47 16 3 C 0.55 11.68 7.76 86.77 0.67 12.35 16 4 O -0.55 -15.43 13.96 -3.91 -0.05 -15.48 16 5 C -0.12 -2.47 5.87 -20.08 -0.12 -2.59 16 6 C -0.09 -1.36 9.45 22.66 0.21 -1.15 16 7 C 0.14 2.78 6.29 38.10 0.24 3.02 16 8 N -0.66 -12.26 5.34 -303.58 -1.62 -13.88 16 9 C 0.53 13.80 6.92 87.66 0.61 14.41 16 10 O -0.54 -17.32 13.68 -3.05 -0.04 -17.36 16 11 C 0.08 2.32 3.21 44.17 0.14 2.46 16 12 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 13 N -0.83 -24.67 8.94 -171.81 -1.54 -26.20 16 14 C -0.12 -4.09 4.78 30.59 0.15 -3.95 16 15 C 0.03 1.31 4.74 29.85 0.14 1.45 16 16 C -0.54 -27.99 9.11 25.60 0.23 -27.76 16 17 H 0.06 2.79 7.74 -2.91 -0.02 2.76 16 18 C 0.01 0.36 5.46 84.65 0.46 0.82 16 19 N -0.93 -52.14 13.29 21.45 0.28 -51.86 16 20 Si 0.95 41.45 29.54 68.60 2.03 43.48 16 21 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 22 H -0.29 -12.29 7.11 99.48 0.71 -11.59 16 23 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 24 C -0.09 -2.02 8.69 22.44 0.19 -1.83 16 25 C -0.10 -2.00 9.81 22.24 0.22 -1.79 16 26 C -0.02 -0.37 6.35 22.61 0.14 -0.23 16 27 Cl -0.05 -1.15 26.01 -2.72 -0.07 -1.22 16 28 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.42 3.07 6.86 -92.70 -0.64 2.44 16 32 H 0.17 1.37 6.40 -2.91 -0.02 1.35 16 33 H 0.43 5.21 8.82 -92.70 -0.82 4.39 16 34 H 0.35 10.89 7.55 -89.69 -0.68 10.21 16 35 H 0.34 10.56 8.58 -89.69 -0.77 9.79 16 36 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.00 0.06 6.87 -2.38 -0.02 0.05 16 39 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 40 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 41 H 0.14 3.53 6.21 -2.91 -0.02 3.51 16 42 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -70.24 369.28 -0.89 -71.13 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: -1.79 Total: 26.33 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: 4.67 Total: -2.46 kcal Atomic # 7 Polarization: -98.78 SS G_CDS: -5.63 Total: -104.41 kcal Atomic # 8 Polarization: -32.75 SS G_CDS: -0.10 Total: -32.85 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.07 Total: -1.22 kcal Total: -70.24 -0.89 -71.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424090323.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.751 kcal (2) G-P(sol) polarization free energy of solvation -70.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds