Wall clock time and date at job start Tue Mar 31 2020 23:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34771 * 119.99781 * 2 1 4 4 O 1.21597 * 120.00171 * 359.97438 * 3 2 1 5 5 C 1.47521 * 120.00036 * 180.02562 * 3 2 1 6 6 C 1.39800 * 120.08566 * 0.26544 * 5 3 2 7 7 C 1.37611 * 119.94334 * 180.29952 * 6 5 3 8 8 C 1.39189 * 120.10648 * 359.42904 * 7 6 5 9 9 N 1.39444 * 119.91794 * 180.30040 * 8 7 6 10 10 C 1.34771 * 120.00569 * 144.84615 * 9 8 7 11 11 O 1.21276 * 120.00178 * 4.58170 * 10 9 8 12 12 C 1.50698 * 120.00168 * 184.58395 * 10 9 8 13 13 H 1.09008 * 109.47141 * 319.99757 * 12 10 9 14 14 N 1.46899 * 109.47352 * 200.00153 * 12 10 9 15 15 C 1.52995 * 109.47439 * 79.99923 * 12 10 9 16 16 C 1.52995 * 109.47430 * 185.00137 * 15 12 10 17 17 C 1.50699 * 109.47361 * 180.02562 * 16 15 12 18 18 H 1.08001 * 120.00150 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00372 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99762 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00197 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47239 * 59.99548 * 21 19 17 23 23 H 1.48493 * 109.46947 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47102 * 299.99537 * 21 19 17 25 25 C 1.39048 * 120.17548 * 0.27676 * 8 7 6 26 26 C 1.37869 * 120.05692 * 0.02562 * 25 8 7 27 27 Cl 1.73598 * 120.05736 * 179.97438 * 26 25 8 28 28 H 1.09001 * 109.47091 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46811 * 299.99879 * 1 2 3 30 30 H 1.08993 * 109.47214 * 60.00501 * 1 2 3 31 31 H 0.96996 * 120.00007 * 179.97438 * 2 1 3 32 32 H 1.08007 * 120.02902 * 0.02562 * 6 5 3 33 33 H 1.07994 * 119.94683 * 179.70864 * 7 6 5 34 34 H 0.97003 * 119.99502 * 324.84548 * 9 8 7 35 35 H 1.00909 * 110.99678 * 299.99991 * 14 12 10 36 36 H 1.00904 * 111.00303 * 63.94936 * 14 12 10 37 37 H 1.09007 * 109.46837 * 305.00175 * 15 12 10 38 38 H 1.09002 * 109.47081 * 64.99699 * 15 12 10 39 39 H 1.09007 * 109.47142 * 299.99851 * 16 15 12 40 40 H 1.08996 * 109.47496 * 60.00143 * 16 15 12 41 41 H 0.97001 * 119.99782 * 180.02562 * 20 19 17 42 42 H 1.07989 * 119.97308 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2202 -0.0005 5 6 3.6141 1.1672 -0.0006 6 6 4.3149 -0.0424 -0.0067 7 6 5.6910 -0.0389 -0.0010 8 6 6.3862 1.1669 -0.0011 9 7 7.7806 1.1658 -0.0016 10 6 8.4551 2.1196 -0.6738 11 8 7.8523 3.0259 -1.2086 12 6 9.9584 2.0600 -0.7608 13 1 10.3656 1.7417 0.1990 14 7 10.4826 3.3902 -1.0981 15 6 10.3674 1.0607 -1.8448 16 6 11.8896 0.9070 -1.8486 17 6 12.2924 -0.0768 -2.9168 18 1 11.5381 -0.5458 -3.5312 19 6 13.6238 -0.3789 -3.1091 20 7 14.5424 0.1918 -2.3606 21 14 14.1231 -1.5989 -4.4327 22 1 13.6726 -1.1033 -5.7581 23 1 15.6005 -1.7480 -4.4365 24 1 13.4930 -2.9149 -4.1560 25 6 5.6939 2.3728 -0.0012 26 6 4.3152 2.3775 -0.0006 27 17 3.4509 3.8830 0.0000 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5137 -0.8900 31 1 1.9500 -0.8400 0.0004 32 1 3.7768 -0.9788 -0.0115 33 1 6.2325 -0.9733 -0.0010 34 1 8.2652 0.4785 0.4818 35 1 10.1195 3.7077 -1.9844 36 1 10.2812 4.0546 -0.3659 37 1 9.9051 0.0947 -1.6414 38 1 10.0364 1.4243 -2.8176 39 1 12.3518 1.8730 -2.0519 40 1 12.2205 0.5433 -0.8759 41 1 15.4791 -0.0205 -2.4961 42 1 6.2365 3.3064 -0.0008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424095315.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:26 Heat of formation + Delta-G solvation = -49.467483 kcal Electronic energy + Delta-G solvation = -25968.692751 eV Core-core repulsion = 21974.513965 eV Total energy + Delta-G solvation = -3994.178787 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.04459 -40.09614 -38.46333 -36.62733 -35.47457 -35.05263 -34.84428 -32.89917 -31.24665 -30.62324 -30.19901 -27.38178 -26.41438 -24.52751 -23.29817 -22.86697 -21.10432 -20.68515 -20.04699 -18.77452 -17.94516 -17.48068 -16.43188 -16.25119 -15.71753 -15.57452 -15.44532 -15.27896 -15.04679 -14.70065 -14.41670 -14.19293 -13.86508 -13.80832 -13.63661 -13.11282 -12.93727 -12.68119 -12.42467 -12.15387 -12.09301 -11.77141 -11.65805 -11.32648 -10.93489 -10.80864 -10.68366 -10.57245 -10.30701 -9.90640 -9.79267 -9.50867 -9.48395 -9.14586 -9.08960 -8.58514 -8.48105 -8.31076 -5.99975 -4.02660 0.33529 0.85071 1.94478 2.25569 2.62823 2.79827 2.89092 3.31637 3.36885 3.38802 3.41748 4.27172 4.33180 4.43942 4.58099 4.66316 4.79424 4.84542 4.93677 4.95168 5.12879 5.31041 5.32433 5.36286 5.40144 5.60032 5.63784 5.73597 5.81740 5.93791 5.99713 6.27926 6.46716 6.51487 6.94218 7.05224 7.07704 7.31622 7.63244 7.67798 7.86484 7.88949 7.91141 8.04886 8.40461 9.04803 9.60879 11.10735 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018857 B = 0.002178 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.535546 B =12853.351742 C =13921.088506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.735 5.735 3 C 0.556 3.444 4 O -0.516 6.516 5 C -0.160 4.160 6 C -0.053 4.053 7 C -0.154 4.154 8 C 0.195 3.805 9 N -0.672 5.672 10 C 0.483 3.517 11 O -0.525 6.525 12 C 0.082 3.918 13 H 0.104 0.896 14 N -0.805 5.805 15 C -0.097 4.097 16 C 0.032 3.968 17 C -0.525 4.525 18 H 0.051 0.949 19 C 0.058 3.942 20 N -0.892 5.892 21 Si 0.890 3.110 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.278 1.278 25 C -0.130 4.130 26 C 0.037 3.963 27 Cl -0.029 7.029 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.400 0.600 32 H 0.137 0.863 33 H 0.142 0.858 34 H 0.419 0.581 35 H 0.350 0.650 36 H 0.336 0.664 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.036 0.964 40 H 0.014 0.986 41 H 0.261 0.739 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.273 -2.060 9.511 26.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.388 5.388 3 C 0.344 3.656 4 O -0.392 6.392 5 C -0.165 4.165 6 C -0.073 4.073 7 C -0.174 4.174 8 C 0.097 3.903 9 N -0.318 5.318 10 C 0.270 3.730 11 O -0.399 6.399 12 C -0.034 4.034 13 H 0.122 0.878 14 N -0.333 5.333 15 C -0.135 4.135 16 C -0.005 4.005 17 C -0.563 4.563 18 H 0.070 0.930 19 C -0.143 4.143 20 N -0.530 5.530 21 Si 0.718 3.282 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.204 1.204 25 C -0.151 4.151 26 C 0.009 3.991 27 Cl 0.001 6.999 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.234 0.766 32 H 0.155 0.845 33 H 0.159 0.841 34 H 0.256 0.744 35 H 0.165 0.835 36 H 0.148 0.852 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.054 0.946 40 H 0.032 0.968 41 H 0.070 0.930 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -24.218 -0.797 9.113 25.888 hybrid contribution -0.291 -1.190 -0.488 1.318 sum -24.509 -1.986 8.626 26.058 Atomic orbital electron populations 1.21533 0.79121 1.02240 1.02516 1.45694 1.07876 1.08474 1.76750 1.18058 0.86880 0.83987 0.76718 1.90883 1.69700 1.30425 1.48150 1.19626 0.93389 0.92821 1.10691 1.20966 0.93674 0.96387 0.96258 1.20986 0.94190 0.97266 1.04996 1.17888 0.83834 0.93200 0.95338 1.43849 1.03868 1.32174 1.51884 1.23303 0.93365 0.80429 0.75885 1.90680 1.70347 1.33843 1.45063 1.21926 0.84262 0.94058 1.03145 0.87846 1.58984 1.63582 1.02545 1.08143 1.21706 1.02328 0.94468 0.94991 1.19012 0.86884 0.97895 0.96733 1.21211 0.91997 1.24979 1.18148 0.93031 1.24991 0.96780 0.96340 0.96185 1.69957 1.00701 1.43055 1.39337 0.86701 0.77349 0.81695 0.82473 1.20297 1.21307 1.20362 1.21181 0.91676 0.99456 1.02760 1.20795 0.91831 0.87736 0.98776 1.98417 1.76228 1.29335 1.95930 0.90603 0.92100 0.92074 0.76558 0.84529 0.84055 0.74357 0.83540 0.85174 0.92667 0.92624 0.94581 0.96788 0.92974 0.82650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.51 10.70 59.85 0.64 1.15 16 2 N -0.73 -5.17 5.66 -68.15 -0.39 -5.55 16 3 C 0.56 6.12 7.76 -12.48 -0.10 6.02 16 4 O -0.52 -7.38 13.95 5.28 0.07 -7.31 16 5 C -0.16 -1.72 5.88 -104.92 -0.62 -2.33 16 6 C -0.05 -0.41 9.53 -39.23 -0.37 -0.78 16 7 C -0.15 -1.29 9.94 -39.46 -0.39 -1.68 16 8 C 0.19 2.14 6.30 -83.74 -0.53 1.61 16 9 N -0.67 -7.17 5.31 -9.87 -0.05 -7.23 16 10 C 0.48 6.59 6.90 -10.99 -0.08 6.51 16 11 O -0.52 -8.51 13.66 5.56 0.08 -8.44 16 12 C 0.08 1.21 3.15 -68.87 -0.22 0.99 16 13 H 0.10 1.37 8.14 -51.92 -0.42 0.95 16 14 N -0.80 -12.22 8.44 -5.66 -0.05 -12.27 16 15 C -0.10 -1.78 4.78 -26.74 -0.13 -1.91 16 16 C 0.03 0.77 4.86 -27.89 -0.14 0.63 16 17 C -0.52 -14.27 9.11 -34.44 -0.31 -14.58 16 18 H 0.05 1.36 7.74 -52.49 -0.41 0.96 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 21 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 C -0.13 -1.65 8.45 -39.42 -0.33 -1.98 16 26 C 0.04 0.47 6.35 -39.11 -0.25 0.23 16 27 Cl -0.03 -0.39 26.01 -51.86 -1.35 -1.74 16 28 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.40 1.59 6.85 -40.82 -0.28 1.31 16 32 H 0.14 0.53 6.39 -52.48 -0.34 0.19 16 33 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.42 3.29 8.82 -40.82 -0.36 2.93 16 35 H 0.35 5.44 8.58 -39.29 -0.34 5.11 16 36 H 0.34 4.34 9.06 -39.29 -0.36 3.99 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.04 0.95 7.75 -51.93 -0.40 0.55 16 40 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.16 2.19 6.21 -52.49 -0.33 1.86 16 LS Contribution 371.11 15.07 5.59 5.59 Total: -1.00 -34.75 371.11 -8.61 -43.36 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -5.32 Total: 7.42 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -2.91 Total: -4.58 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: 0.25 Total: -50.45 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: 0.15 Total: -15.75 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.35 Total: -1.74 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.75 -8.61 -43.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424095315.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.105 kcal (2) G-P(sol) polarization free energy of solvation -34.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds