Wall clock time and date at job start Tue Mar 31 2020 23:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34771 * 119.99781 * 2 1 4 4 O 1.21597 * 120.00171 * 359.97438 * 3 2 1 5 5 C 1.47521 * 120.00036 * 180.02562 * 3 2 1 6 6 C 1.39800 * 120.08566 * 0.26544 * 5 3 2 7 7 C 1.37611 * 119.94334 * 180.29952 * 6 5 3 8 8 C 1.39189 * 120.10648 * 359.42904 * 7 6 5 9 9 N 1.39444 * 119.91794 * 180.30040 * 8 7 6 10 10 C 1.34771 * 120.00569 * 144.84615 * 9 8 7 11 11 O 1.21276 * 120.00178 * 4.58170 * 10 9 8 12 12 C 1.50698 * 120.00168 * 184.58395 * 10 9 8 13 13 H 1.09008 * 109.47141 * 319.99757 * 12 10 9 14 14 N 1.46899 * 109.47352 * 200.00153 * 12 10 9 15 15 C 1.52995 * 109.47439 * 79.99923 * 12 10 9 16 16 C 1.52995 * 109.47430 * 185.00137 * 15 12 10 17 17 C 1.50699 * 109.47361 * 180.02562 * 16 15 12 18 18 H 1.08001 * 120.00150 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00372 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99762 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00197 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47239 * 59.99548 * 21 19 17 23 23 H 1.48493 * 109.46947 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47102 * 299.99537 * 21 19 17 25 25 C 1.39048 * 120.17548 * 0.27676 * 8 7 6 26 26 C 1.37869 * 120.05692 * 0.02562 * 25 8 7 27 27 Cl 1.73598 * 120.05736 * 179.97438 * 26 25 8 28 28 H 1.09001 * 109.47091 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46811 * 299.99879 * 1 2 3 30 30 H 1.08993 * 109.47214 * 60.00501 * 1 2 3 31 31 H 0.96996 * 120.00007 * 179.97438 * 2 1 3 32 32 H 1.08007 * 120.02902 * 0.02562 * 6 5 3 33 33 H 1.07994 * 119.94683 * 179.70864 * 7 6 5 34 34 H 0.97003 * 119.99502 * 324.84548 * 9 8 7 35 35 H 1.00909 * 110.99678 * 299.99991 * 14 12 10 36 36 H 1.00904 * 111.00303 * 63.94936 * 14 12 10 37 37 H 1.09007 * 109.46837 * 305.00175 * 15 12 10 38 38 H 1.09002 * 109.47081 * 64.99699 * 15 12 10 39 39 H 1.09007 * 109.47142 * 299.99851 * 16 15 12 40 40 H 1.08996 * 109.47496 * 60.00143 * 16 15 12 41 41 H 0.97001 * 119.99782 * 180.02562 * 20 19 17 42 42 H 1.07989 * 119.97308 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2202 -0.0005 5 6 3.6141 1.1672 -0.0006 6 6 4.3149 -0.0424 -0.0067 7 6 5.6910 -0.0389 -0.0010 8 6 6.3862 1.1669 -0.0011 9 7 7.7806 1.1658 -0.0016 10 6 8.4551 2.1196 -0.6738 11 8 7.8523 3.0259 -1.2086 12 6 9.9584 2.0600 -0.7608 13 1 10.3656 1.7417 0.1990 14 7 10.4826 3.3902 -1.0981 15 6 10.3674 1.0607 -1.8448 16 6 11.8896 0.9070 -1.8486 17 6 12.2924 -0.0768 -2.9168 18 1 11.5381 -0.5458 -3.5312 19 6 13.6238 -0.3789 -3.1091 20 7 14.5424 0.1918 -2.3606 21 14 14.1231 -1.5989 -4.4327 22 1 13.6726 -1.1033 -5.7581 23 1 15.6005 -1.7480 -4.4365 24 1 13.4930 -2.9149 -4.1560 25 6 5.6939 2.3728 -0.0012 26 6 4.3152 2.3775 -0.0006 27 17 3.4509 3.8830 0.0000 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5137 -0.8900 31 1 1.9500 -0.8400 0.0004 32 1 3.7768 -0.9788 -0.0115 33 1 6.2325 -0.9733 -0.0010 34 1 8.2652 0.4785 0.4818 35 1 10.1195 3.7077 -1.9844 36 1 10.2812 4.0546 -0.3659 37 1 9.9051 0.0947 -1.6414 38 1 10.0364 1.4243 -2.8176 39 1 12.3518 1.8730 -2.0519 40 1 12.2205 0.5433 -0.8759 41 1 15.4791 -0.0205 -2.4961 42 1 6.2365 3.3064 -0.0008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424095315.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:25 Heat of formation + Delta-G solvation = -76.312991 kcal Electronic energy + Delta-G solvation = -25969.856860 eV Core-core repulsion = 21974.513965 eV Total energy + Delta-G solvation = -3995.342895 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.98251 -40.97425 -39.35234 -37.57185 -36.86565 -35.97852 -35.59717 -34.81807 -32.04372 -31.93117 -31.42665 -28.43364 -27.54754 -25.87172 -24.36747 -23.75057 -22.42129 -21.64726 -21.25519 -19.54177 -18.90098 -18.59646 -18.13933 -17.18014 -17.01516 -16.55327 -16.37166 -16.26245 -16.11893 -15.90776 -15.57832 -15.17349 -15.10318 -14.57033 -14.53169 -14.25637 -13.97426 -13.82073 -13.67849 -13.42611 -13.15035 -12.91368 -12.76427 -12.64000 -12.49839 -12.28783 -12.22186 -11.77699 -11.62650 -11.44289 -11.24725 -11.02509 -10.69277 -10.46264 -10.16616 -9.98119 -9.70348 -9.36940 -8.11761 -6.21478 -0.49035 0.07789 1.04722 1.24508 1.44058 1.46247 1.53714 1.73914 1.95039 2.19948 2.46282 2.62886 3.21699 3.44815 3.60057 3.67355 3.73772 3.98137 4.07200 4.09843 4.18006 4.29715 4.48248 4.54330 4.65461 4.78990 4.85014 4.93511 4.96972 4.99352 5.05922 5.14624 5.27139 5.39875 5.59877 5.64694 5.87444 6.01248 6.04262 6.25854 6.32318 6.49176 6.50484 6.91492 6.97656 7.19918 7.46604 8.98945 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018857 B = 0.002178 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.535546 B =12853.351742 C =13921.088506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.716 5.716 3 C 0.549 3.451 4 O -0.559 6.559 5 C -0.167 4.167 6 C -0.036 4.036 7 C -0.138 4.138 8 C 0.179 3.821 9 N -0.656 5.656 10 C 0.490 3.510 11 O -0.553 6.553 12 C 0.090 3.910 13 H 0.121 0.879 14 N -0.819 5.819 15 C -0.083 4.083 16 C 0.038 3.962 17 C -0.542 4.542 18 H 0.057 0.943 19 C 0.001 3.999 20 N -0.929 5.929 21 Si 0.957 3.043 22 H -0.273 1.273 23 H -0.287 1.287 24 H -0.264 1.264 25 C -0.146 4.146 26 C 0.016 3.984 27 Cl -0.052 7.052 28 H 0.115 0.885 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.418 0.582 32 H 0.185 0.815 33 H 0.179 0.821 34 H 0.435 0.565 35 H 0.346 0.654 36 H 0.348 0.652 37 H 0.075 0.925 38 H 0.042 0.958 39 H 0.004 0.996 40 H -0.002 1.002 41 H 0.261 0.739 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.491 -5.689 9.582 27.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.370 5.370 3 C 0.336 3.664 4 O -0.438 6.438 5 C -0.172 4.172 6 C -0.055 4.055 7 C -0.158 4.158 8 C 0.083 3.917 9 N -0.303 5.303 10 C 0.277 3.723 11 O -0.430 6.430 12 C -0.025 4.025 13 H 0.139 0.861 14 N -0.348 5.348 15 C -0.121 4.121 16 C 0.001 3.999 17 C -0.580 4.580 18 H 0.075 0.925 19 C -0.197 4.197 20 N -0.569 5.569 21 Si 0.782 3.218 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.189 1.189 25 C -0.167 4.167 26 C -0.013 4.013 27 Cl -0.023 7.023 28 H 0.133 0.867 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.255 0.745 32 H 0.202 0.798 33 H 0.196 0.804 34 H 0.275 0.725 35 H 0.160 0.840 36 H 0.162 0.838 37 H 0.094 0.906 38 H 0.060 0.940 39 H 0.023 0.977 40 H 0.016 0.984 41 H 0.070 0.930 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -25.457 -4.500 9.214 27.444 hybrid contribution 0.041 -0.115 -0.473 0.488 sum -25.416 -4.615 8.741 27.270 Atomic orbital electron populations 1.21690 0.78142 1.04466 1.01467 1.45596 1.08532 1.08047 1.74787 1.18240 0.87095 0.84486 0.76564 1.90866 1.70407 1.32177 1.50361 1.19838 0.93571 0.93204 1.10565 1.21463 0.93583 0.96862 0.93590 1.21394 0.94475 0.97361 1.02570 1.18061 0.83673 0.93691 0.96316 1.43588 1.04004 1.31561 1.51100 1.22853 0.92689 0.80697 0.76051 1.90690 1.70609 1.35166 1.46528 1.21709 0.85376 0.92930 1.02528 0.86108 1.58978 1.64034 1.03248 1.08521 1.21425 0.98313 0.96620 0.95784 1.18831 0.90631 0.95414 0.95006 1.21705 0.92355 1.25261 1.18699 0.92510 1.25882 0.96994 0.98309 0.98479 1.70092 1.00972 1.44697 1.41165 0.85629 0.76905 0.79718 0.79535 1.19838 1.21234 1.18883 1.21037 0.91805 0.99567 1.04303 1.20947 0.91915 0.87767 1.00668 1.98398 1.76661 1.31026 1.96213 0.86678 0.93066 0.93311 0.74454 0.79819 0.80402 0.72496 0.83995 0.83831 0.90635 0.93957 0.97733 0.98365 0.93017 0.84939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.78 10.70 127.77 1.37 2.15 16 2 N -0.72 -8.02 5.66 -487.78 -2.76 -10.78 16 3 C 0.55 11.37 7.76 86.69 0.67 12.05 16 4 O -0.56 -16.24 13.95 -4.02 -0.06 -16.29 16 5 C -0.17 -3.29 5.88 -20.06 -0.12 -3.41 16 6 C -0.04 -0.40 9.53 22.50 0.21 -0.19 16 7 C -0.14 -1.71 9.94 22.35 0.22 -1.49 16 8 C 0.18 3.57 6.30 38.35 0.24 3.81 16 9 N -0.66 -12.57 5.31 -303.52 -1.61 -14.19 16 10 C 0.49 12.92 6.90 87.66 0.61 13.53 16 11 O -0.55 -18.11 13.66 -3.02 -0.04 -18.15 16 12 C 0.09 2.59 3.15 44.17 0.14 2.73 16 13 H 0.12 3.03 8.14 -2.38 -0.02 3.01 16 14 N -0.82 -25.16 8.44 -171.80 -1.45 -26.61 16 15 C -0.08 -2.99 4.78 30.59 0.15 -2.85 16 16 C 0.04 1.87 4.86 29.85 0.15 2.01 16 17 C -0.54 -29.35 9.11 25.60 0.23 -29.12 16 18 H 0.06 2.94 7.74 -2.91 -0.02 2.92 16 19 C 0.00 0.07 5.46 84.65 0.46 0.53 16 20 N -0.93 -55.08 13.29 21.45 0.28 -54.80 16 21 Si 0.96 43.02 29.54 68.60 2.03 45.04 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 23 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 24 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 25 C -0.15 -3.72 8.45 22.38 0.19 -3.53 16 26 C 0.02 0.40 6.35 22.58 0.14 0.54 16 27 Cl -0.05 -1.51 26.01 -2.72 -0.07 -1.58 16 28 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 29 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.42 1.41 6.85 -92.71 -0.63 0.78 16 32 H 0.18 0.25 6.39 -2.91 -0.02 0.23 16 33 H 0.18 0.97 8.06 -2.91 -0.02 0.95 16 34 H 0.43 5.42 8.82 -92.71 -0.82 4.60 16 35 H 0.35 11.06 8.58 -89.69 -0.77 10.29 16 36 H 0.35 9.08 9.06 -89.69 -0.81 8.27 16 37 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 38 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.00 0.23 7.75 -2.38 -0.02 0.21 16 40 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 41 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 42 H 0.13 3.95 6.21 -2.92 -0.02 3.93 16 Total: -1.00 -79.23 371.11 -0.94 -80.17 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: -1.92 Total: 20.40 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 4.66 Total: -3.22 kcal Atomic # 7 Polarization: -100.83 SS G_CDS: -5.54 Total: -106.37 kcal Atomic # 8 Polarization: -34.34 SS G_CDS: -0.10 Total: -34.44 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -0.07 Total: -1.58 kcal Total: -79.23 -0.94 -80.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424095315.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.859 kcal (2) G-P(sol) polarization free energy of solvation -79.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds