Wall clock time and date at job start Tue Mar 31 2020 23:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21295 * 120.00211 * 2 1 4 4 N 1.34776 * 120.00157 * 180.02562 * 2 1 3 5 5 C 1.40120 * 120.00276 * 183.87887 * 4 2 1 6 6 C 1.38702 * 120.08457 * 334.47054 * 5 4 2 7 7 C 1.38189 * 120.01075 * 180.25663 * 6 5 4 8 8 C 1.38403 * 120.18594 * 359.48568 * 7 6 5 9 9 Cl 1.73603 * 119.91590 * 180.23349 * 8 7 6 10 10 C 1.38298 * 120.16904 * 0.25966 * 8 7 6 11 11 C 1.38703 * 119.98916 * 359.97438 * 10 8 7 12 12 N 1.40060 * 120.09703 * 179.97438 * 11 10 8 13 13 C 1.34782 * 119.99979 * 325.74981 * 12 11 10 14 14 O 1.21301 * 119.99751 * 354.50713 * 13 12 11 15 15 C 1.50694 * 120.00150 * 174.50714 * 13 12 11 16 16 H 1.09001 * 109.47445 * 319.99607 * 15 13 12 17 17 N 1.46898 * 109.47198 * 199.99640 * 15 13 12 18 18 C 1.53001 * 109.47080 * 79.99890 * 15 13 12 19 19 C 1.53003 * 109.47030 * 185.00117 * 18 15 13 20 20 C 1.50695 * 109.47015 * 180.02562 * 19 18 15 21 21 H 1.08005 * 120.00217 * 359.97438 * 20 19 18 22 22 C 1.37879 * 120.00278 * 179.97438 * 20 19 18 23 23 N 1.31521 * 119.99579 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00431 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46776 * 90.00116 * 24 22 20 26 26 H 1.48497 * 109.46991 * 210.00056 * 24 22 20 27 27 H 1.48500 * 109.46822 * 329.99822 * 24 22 20 28 28 H 1.08997 * 109.47311 * 269.99845 * 1 2 3 29 29 H 1.09004 * 109.46958 * 29.99816 * 1 2 3 30 30 H 1.09001 * 109.47139 * 149.99947 * 1 2 3 31 31 H 0.97000 * 119.99846 * 3.87879 * 4 2 1 32 32 H 1.08001 * 119.99535 * 359.97438 * 6 5 4 33 33 H 1.08009 * 119.90904 * 179.77129 * 7 6 5 34 34 H 1.08003 * 120.00775 * 179.97438 * 10 8 7 35 35 H 0.96997 * 120.00113 * 145.74480 * 12 11 10 36 36 H 1.00895 * 111.00531 * 176.04822 * 17 15 13 37 37 H 1.00901 * 110.99989 * 300.00323 * 17 15 13 38 38 H 1.09002 * 109.47153 * 304.99967 * 18 15 13 39 39 H 1.09001 * 109.47290 * 65.00101 * 18 15 13 40 40 H 1.09002 * 109.47031 * 299.99925 * 19 18 15 41 41 H 1.08994 * 109.47266 * 59.99497 * 19 18 15 42 42 H 0.96997 * 119.99956 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5797 -1.1686 0.0816 6 6 4.3030 -0.0693 -0.3566 7 6 5.6828 -0.0745 -0.2799 8 6 6.3465 -1.1704 0.2435 9 17 8.0797 -1.1670 0.3422 10 6 5.6325 -2.2685 0.6875 11 6 4.2477 -2.2729 0.6093 12 7 3.5224 -3.3840 1.0578 13 6 4.0320 -4.6236 0.9154 14 8 5.0709 -4.7865 0.3107 15 6 3.3112 -5.8072 1.5073 16 1 2.9152 -5.5388 2.4868 17 7 4.2475 -6.9302 1.6487 18 6 2.1599 -6.2160 0.5863 19 6 1.3523 -7.3358 1.2456 20 6 0.2187 -7.7389 0.3381 21 1 0.0871 -7.2454 -0.6135 22 6 -0.6505 -8.7377 0.7227 23 7 -0.4900 -9.3389 1.8813 24 14 -2.0561 -9.2369 -0.4019 25 1 -1.6030 -10.3220 -1.3087 26 1 -3.1972 -9.7198 0.4166 27 1 -2.4855 -8.0655 -1.2074 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6975 -2.0062 -0.0577 32 1 3.7881 0.7891 -0.7621 33 1 6.2446 0.7810 -0.6250 34 1 6.1532 -3.1225 1.0950 35 1 2.6535 -3.2613 1.4710 36 1 3.8050 -7.7151 2.1027 37 1 4.6287 -7.1980 0.7537 38 1 1.5128 -5.3566 0.4101 39 1 2.5621 -6.5688 -0.3634 40 1 1.9993 -8.1951 1.4218 41 1 0.9502 -6.9831 2.1953 42 1 -1.1013 -10.0418 2.1517 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424109093.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:34 Heat of formation + Delta-G solvation = -57.823555 kcal Electronic energy + Delta-G solvation = -26593.278198 eV Core-core repulsion = 22598.737065 eV Total energy + Delta-G solvation = -3994.541133 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.29240 -40.05156 -38.55258 -36.71481 -35.72457 -35.11508 -34.58931 -32.97610 -31.18279 -30.22059 -30.02222 -28.59523 -26.65103 -24.44557 -23.59106 -22.39947 -20.95207 -20.81127 -20.04255 -18.74967 -17.60065 -17.44516 -17.16815 -16.35712 -15.85396 -15.60299 -15.32916 -15.04720 -14.57988 -14.53611 -14.38228 -14.22756 -13.86175 -13.68994 -13.35052 -13.09528 -13.06812 -12.77088 -12.58343 -12.34826 -12.20628 -12.01249 -11.85315 -11.24211 -11.11476 -11.03390 -10.78494 -10.63645 -10.41719 -10.14187 -10.13157 -10.00118 -9.48527 -9.35337 -8.68269 -8.54530 -8.36240 -8.07378 -6.18754 -4.22691 0.79532 1.08254 2.00072 2.18175 2.57797 2.59613 2.90922 3.19688 3.27203 3.28646 3.48571 4.27976 4.29988 4.60373 4.69069 4.79399 4.90468 4.98652 5.00487 5.05072 5.15286 5.17613 5.36837 5.38513 5.48771 5.53799 5.70017 5.92294 5.99368 6.06807 6.13939 6.22932 6.32900 6.69631 6.70753 6.93984 7.11436 7.36240 7.40639 7.48685 7.66732 7.74507 7.77568 8.07650 8.18972 8.83152 9.42978 10.91996 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011127 B = 0.002948 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.809098 B = 9494.193410 C =11653.639465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.514 3.486 3 O -0.526 6.526 4 N -0.668 5.668 5 C 0.122 3.878 6 C -0.106 4.106 7 C -0.110 4.110 8 C -0.032 4.032 9 Cl -0.070 7.070 10 C -0.094 4.094 11 C 0.141 3.859 12 N -0.678 5.678 13 C 0.525 3.475 14 O -0.508 6.508 15 C 0.077 3.923 16 H 0.101 0.899 17 N -0.830 5.830 18 C -0.138 4.138 19 C 0.024 3.976 20 C -0.527 4.527 21 H 0.055 0.945 22 C 0.060 3.940 23 N -0.892 5.892 24 Si 0.893 3.107 25 H -0.280 1.280 26 H -0.285 1.285 27 H -0.274 1.274 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.414 0.586 32 H 0.164 0.836 33 H 0.136 0.864 34 H 0.150 0.850 35 H 0.411 0.589 36 H 0.358 0.642 37 H 0.347 0.653 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.159 18.269 -1.696 19.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.303 3.697 3 O -0.402 6.402 4 N -0.313 5.313 5 C 0.024 3.976 6 C -0.126 4.126 7 C -0.130 4.130 8 C -0.060 4.060 9 Cl -0.041 7.041 10 C -0.116 4.116 11 C 0.044 3.956 12 N -0.325 5.325 13 C 0.313 3.687 14 O -0.381 6.381 15 C -0.038 4.038 16 H 0.119 0.881 17 N -0.363 5.363 18 C -0.178 4.178 19 C -0.013 4.013 20 C -0.565 4.565 21 H 0.073 0.927 22 C -0.142 4.142 23 N -0.530 5.530 24 Si 0.721 3.279 25 H -0.206 1.206 26 H -0.211 1.211 27 H -0.199 1.199 28 H 0.119 0.881 29 H 0.117 0.883 30 H 0.105 0.895 31 H 0.250 0.750 32 H 0.182 0.818 33 H 0.154 0.846 34 H 0.168 0.832 35 H 0.247 0.753 36 H 0.174 0.826 37 H 0.161 0.839 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.037 0.963 41 H 0.038 0.962 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.755 19.171 -1.503 20.735 hybrid contribution -2.094 -1.371 -0.957 2.680 sum 5.661 17.800 -2.460 18.840 Atomic orbital electron populations 1.21927 0.90149 1.05664 1.05572 1.21086 0.91070 0.82778 0.74756 1.90649 1.70086 1.31430 1.47999 1.43624 1.04834 1.10446 1.72439 1.17684 0.82876 0.96295 1.00698 1.21424 0.92822 0.98821 0.99543 1.20961 0.93915 0.97558 1.00554 1.20693 0.84750 0.96201 1.04330 1.98365 1.10068 1.98620 1.97014 1.20825 0.91778 0.98288 1.00678 1.17262 0.90996 0.87841 0.99532 1.43605 1.22713 1.04666 1.61546 1.21242 0.85232 0.83458 0.78720 1.90690 1.23205 1.84940 1.39242 1.21490 0.92104 0.89879 1.00352 0.88066 1.58731 1.37255 1.11213 1.29054 1.22425 0.95507 1.01352 0.98520 1.19102 0.94257 0.91926 0.95976 1.21144 1.11956 1.19439 1.03950 0.92708 1.25013 0.97887 0.96170 0.95167 1.69942 1.37890 1.24827 1.20353 0.86582 0.81845 0.78912 0.80606 1.20576 1.21114 1.19882 0.88064 0.88286 0.89461 0.74972 0.81840 0.84578 0.83200 0.75302 0.82636 0.83948 0.92661 0.92404 0.96298 0.96240 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.91 10.31 36.00 0.37 -0.54 16 2 C 0.51 4.64 7.83 -10.99 -0.09 4.55 16 3 O -0.53 -6.52 14.03 5.54 0.08 -6.44 16 4 N -0.67 -5.90 5.14 -9.72 -0.05 -5.95 16 5 C 0.12 1.38 6.47 -83.45 -0.54 0.84 16 6 C -0.11 -1.22 8.79 -39.43 -0.35 -1.57 16 7 C -0.11 -1.22 9.82 -39.54 -0.39 -1.61 16 8 C -0.03 -0.39 6.32 -39.50 -0.25 -0.64 16 9 Cl -0.07 -0.80 28.95 -51.86 -1.50 -2.30 16 10 C -0.09 -1.27 8.43 -39.39 -0.33 -1.60 16 11 C 0.14 1.75 6.28 -83.48 -0.52 1.22 16 12 N -0.68 -7.82 4.96 -9.73 -0.05 -7.87 16 13 C 0.53 7.63 6.81 -10.99 -0.07 7.56 16 14 O -0.51 -8.86 14.02 5.54 0.08 -8.78 16 15 C 0.08 1.14 3.21 -68.87 -0.22 0.92 16 16 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 17 N -0.83 -12.86 8.94 -5.66 -0.05 -12.91 16 18 C -0.14 -2.38 4.78 -26.73 -0.13 -2.51 16 19 C 0.02 0.54 4.74 -27.88 -0.13 0.41 16 20 C -0.53 -13.52 9.11 -34.44 -0.31 -13.83 16 21 H 0.05 1.38 7.74 -52.48 -0.41 0.97 16 22 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 23 N -0.89 -24.86 13.29 55.43 0.74 -24.12 16 24 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 28 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.41 2.84 7.95 -40.82 -0.32 2.51 16 32 H 0.16 1.93 5.52 -52.49 -0.29 1.64 16 33 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 34 H 0.15 2.23 6.49 -52.48 -0.34 1.89 16 35 H 0.41 3.64 8.14 -40.82 -0.33 3.31 16 36 H 0.36 5.60 7.55 -39.29 -0.30 5.30 16 37 H 0.35 5.48 8.58 -39.29 -0.34 5.14 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.02 0.44 6.87 -51.93 -0.36 0.09 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 LS Contribution 370.73 15.07 5.59 5.59 Total: -1.00 -31.72 370.73 -8.46 -40.18 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -5.20 Total: 12.66 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -3.06 Total: -5.29 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: 0.59 Total: -50.85 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: 0.16 Total: -15.22 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.50 Total: -2.30 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.72 -8.46 -40.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424109093.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.645 kcal (2) G-P(sol) polarization free energy of solvation -31.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds