Wall clock time and date at job start Tue Mar 31 2020 23:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21295 * 120.00211 * 2 1 4 4 N 1.34776 * 120.00157 * 180.02562 * 2 1 3 5 5 C 1.40120 * 120.00276 * 183.87887 * 4 2 1 6 6 C 1.38702 * 120.08457 * 334.47054 * 5 4 2 7 7 C 1.38189 * 120.01075 * 180.25663 * 6 5 4 8 8 C 1.38403 * 120.18594 * 359.48568 * 7 6 5 9 9 Cl 1.73603 * 119.91590 * 180.23349 * 8 7 6 10 10 C 1.38298 * 120.16904 * 0.25966 * 8 7 6 11 11 C 1.38703 * 119.98916 * 359.97438 * 10 8 7 12 12 N 1.40060 * 120.09703 * 179.97438 * 11 10 8 13 13 C 1.34782 * 119.99979 * 325.74981 * 12 11 10 14 14 O 1.21301 * 119.99751 * 354.50713 * 13 12 11 15 15 C 1.50694 * 120.00150 * 174.50714 * 13 12 11 16 16 H 1.09001 * 109.47445 * 319.99607 * 15 13 12 17 17 N 1.46898 * 109.47198 * 199.99640 * 15 13 12 18 18 C 1.53001 * 109.47080 * 79.99890 * 15 13 12 19 19 C 1.53003 * 109.47030 * 185.00117 * 18 15 13 20 20 C 1.50695 * 109.47015 * 180.02562 * 19 18 15 21 21 H 1.08005 * 120.00217 * 359.97438 * 20 19 18 22 22 C 1.37879 * 120.00278 * 179.97438 * 20 19 18 23 23 N 1.31521 * 119.99579 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00431 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46776 * 90.00116 * 24 22 20 26 26 H 1.48497 * 109.46991 * 210.00056 * 24 22 20 27 27 H 1.48500 * 109.46822 * 329.99822 * 24 22 20 28 28 H 1.08997 * 109.47311 * 269.99845 * 1 2 3 29 29 H 1.09004 * 109.46958 * 29.99816 * 1 2 3 30 30 H 1.09001 * 109.47139 * 149.99947 * 1 2 3 31 31 H 0.97000 * 119.99846 * 3.87879 * 4 2 1 32 32 H 1.08001 * 119.99535 * 359.97438 * 6 5 4 33 33 H 1.08009 * 119.90904 * 179.77129 * 7 6 5 34 34 H 1.08003 * 120.00775 * 179.97438 * 10 8 7 35 35 H 0.96997 * 120.00113 * 145.74480 * 12 11 10 36 36 H 1.00895 * 111.00531 * 176.04822 * 17 15 13 37 37 H 1.00901 * 110.99989 * 300.00323 * 17 15 13 38 38 H 1.09002 * 109.47153 * 304.99967 * 18 15 13 39 39 H 1.09001 * 109.47290 * 65.00101 * 18 15 13 40 40 H 1.09002 * 109.47031 * 299.99925 * 19 18 15 41 41 H 1.08994 * 109.47266 * 59.99497 * 19 18 15 42 42 H 0.96997 * 119.99956 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5797 -1.1686 0.0816 6 6 4.3030 -0.0693 -0.3566 7 6 5.6828 -0.0745 -0.2799 8 6 6.3465 -1.1704 0.2435 9 17 8.0797 -1.1670 0.3422 10 6 5.6325 -2.2685 0.6875 11 6 4.2477 -2.2729 0.6093 12 7 3.5224 -3.3840 1.0578 13 6 4.0320 -4.6236 0.9154 14 8 5.0709 -4.7865 0.3107 15 6 3.3112 -5.8072 1.5073 16 1 2.9152 -5.5388 2.4868 17 7 4.2475 -6.9302 1.6487 18 6 2.1599 -6.2160 0.5863 19 6 1.3523 -7.3358 1.2456 20 6 0.2187 -7.7389 0.3381 21 1 0.0871 -7.2454 -0.6135 22 6 -0.6505 -8.7377 0.7227 23 7 -0.4900 -9.3389 1.8813 24 14 -2.0561 -9.2369 -0.4019 25 1 -1.6030 -10.3220 -1.3087 26 1 -3.1972 -9.7198 0.4166 27 1 -2.4855 -8.0655 -1.2074 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6975 -2.0062 -0.0577 32 1 3.7881 0.7891 -0.7621 33 1 6.2446 0.7810 -0.6250 34 1 6.1532 -3.1225 1.0950 35 1 2.6535 -3.2613 1.4710 36 1 3.8050 -7.7151 2.1027 37 1 4.6287 -7.1980 0.7537 38 1 1.5128 -5.3566 0.4101 39 1 2.5621 -6.5688 -0.3634 40 1 1.9993 -8.1951 1.4218 41 1 0.9502 -6.9831 2.1953 42 1 -1.1013 -10.0418 2.1517 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424109093.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:33 Heat of formation + Delta-G solvation = -79.981384 kcal Electronic energy + Delta-G solvation = -26594.239033 eV Core-core repulsion = 22598.737065 eV Total energy + Delta-G solvation = -3995.501969 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.21956 -41.03316 -39.51153 -37.65658 -37.11148 -36.03599 -35.55097 -34.82923 -31.89591 -31.67857 -31.14079 -29.36076 -28.09276 -25.95392 -24.60265 -23.45600 -22.31887 -21.65990 -21.24210 -19.67939 -18.85132 -18.43306 -18.11477 -17.92008 -16.69826 -16.57521 -16.51573 -16.33267 -16.09022 -15.67518 -15.43479 -15.21249 -14.90005 -14.77105 -14.61585 -14.45233 -13.98272 -13.72023 -13.45974 -13.31932 -13.26919 -13.13395 -12.95852 -12.83934 -12.68299 -12.49335 -12.03942 -11.80344 -11.70212 -11.55964 -11.32278 -11.27248 -10.92276 -10.77545 -10.53713 -9.70915 -9.59842 -8.97865 -8.19309 -6.29006 -0.11926 0.11730 1.07157 1.41525 1.42741 1.45014 1.48274 1.52656 1.73234 2.00156 2.41665 2.55763 3.15378 3.54256 3.62061 3.71613 3.77346 4.00671 4.11059 4.15589 4.18836 4.23076 4.48793 4.54229 4.66005 4.66515 4.75090 4.84612 4.98755 5.09055 5.11055 5.13549 5.23877 5.28437 5.50300 5.68504 5.77398 5.83643 6.01819 6.22895 6.24475 6.28811 6.46326 6.87478 6.95812 7.00349 7.40457 8.91271 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011127 B = 0.002948 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.809098 B = 9494.193410 C =11653.639465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.511 3.489 3 O -0.562 6.562 4 N -0.661 5.661 5 C 0.127 3.873 6 C -0.112 4.112 7 C -0.102 4.102 8 C -0.042 4.042 9 Cl -0.067 7.067 10 C -0.107 4.107 11 C 0.129 3.871 12 N -0.660 5.660 13 C 0.530 3.470 14 O -0.539 6.539 15 C 0.085 3.915 16 H 0.117 0.883 17 N -0.832 5.832 18 C -0.122 4.122 19 C 0.029 3.971 20 C -0.541 4.541 21 H 0.058 0.942 22 C 0.006 3.994 23 N -0.927 5.927 24 Si 0.955 3.045 25 H -0.280 1.280 26 H -0.285 1.285 27 H -0.261 1.261 28 H 0.117 0.883 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.424 0.576 32 H 0.164 0.836 33 H 0.157 0.843 34 H 0.132 0.868 35 H 0.425 0.575 36 H 0.356 0.644 37 H 0.345 0.655 38 H 0.076 0.924 39 H 0.046 0.954 40 H 0.000 1.000 41 H 0.005 0.995 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.822 19.527 -2.430 20.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.303 3.697 3 O -0.440 6.440 4 N -0.307 5.307 5 C 0.029 3.971 6 C -0.133 4.133 7 C -0.122 4.122 8 C -0.070 4.070 9 Cl -0.038 7.038 10 C -0.128 4.128 11 C 0.032 3.968 12 N -0.308 5.308 13 C 0.319 3.681 14 O -0.414 6.414 15 C -0.030 4.030 16 H 0.135 0.865 17 N -0.364 5.364 18 C -0.162 4.162 19 C -0.008 4.008 20 C -0.579 4.579 21 H 0.077 0.923 22 C -0.193 4.193 23 N -0.567 5.567 24 Si 0.780 3.220 25 H -0.206 1.206 26 H -0.210 1.210 27 H -0.185 1.185 28 H 0.135 0.865 29 H 0.121 0.879 30 H 0.125 0.875 31 H 0.263 0.737 32 H 0.181 0.819 33 H 0.174 0.826 34 H 0.150 0.850 35 H 0.264 0.736 36 H 0.171 0.829 37 H 0.158 0.842 38 H 0.095 0.905 39 H 0.065 0.935 40 H 0.018 0.982 41 H 0.024 0.976 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.380 20.445 -2.235 21.533 hybrid contribution -1.653 -1.708 -0.720 2.484 sum 4.728 18.737 -2.955 19.548 Atomic orbital electron populations 1.21979 0.86837 1.06867 1.06888 1.21833 0.92512 0.81994 0.73400 1.90635 1.71091 1.32658 1.49645 1.43676 1.03803 1.11231 1.71969 1.17735 0.84151 0.95595 0.99634 1.21532 0.93071 0.98911 0.99784 1.21184 0.93954 0.97651 0.99367 1.20759 0.85001 0.96367 1.04830 1.98361 1.09779 1.98622 1.97033 1.20778 0.92430 0.98184 1.01413 1.17252 0.90793 0.88256 1.00485 1.43336 1.23003 1.03627 1.60857 1.21048 0.84772 0.84066 0.78259 1.90688 1.24582 1.85481 1.40656 1.21418 0.91181 0.89905 1.00538 0.86530 1.58742 1.37352 1.11375 1.28902 1.22177 0.95944 1.00288 0.97800 1.18975 0.93725 0.92921 0.95211 1.21627 1.12653 1.19184 1.04421 0.92349 1.25832 1.00503 0.96447 0.96488 1.70058 1.39030 1.25570 1.22075 0.85597 0.78820 0.78761 0.78776 1.20569 1.21047 1.18538 0.86523 0.87856 0.87488 0.73699 0.81857 0.82572 0.84987 0.73603 0.82892 0.84192 0.90539 0.93514 0.98157 0.97631 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 10.31 71.23 0.73 -0.51 16 2 C 0.51 8.16 7.83 87.66 0.69 8.85 16 3 O -0.56 -13.20 14.03 -3.08 -0.04 -13.24 16 4 N -0.66 -10.25 5.14 -303.05 -1.56 -11.81 16 5 C 0.13 2.70 6.47 38.21 0.25 2.95 16 6 C -0.11 -2.47 8.79 22.37 0.20 -2.27 16 7 C -0.10 -2.14 9.82 22.30 0.22 -1.92 16 8 C -0.04 -1.00 6.32 22.32 0.14 -0.86 16 9 Cl -0.07 -1.51 28.95 -2.72 -0.08 -1.59 16 10 C -0.11 -2.83 8.43 22.40 0.19 -2.65 16 11 C 0.13 3.07 6.28 38.23 0.24 3.31 16 12 N -0.66 -14.22 4.96 -303.08 -1.50 -15.72 16 13 C 0.53 14.87 6.81 87.65 0.60 15.47 16 14 O -0.54 -18.67 14.02 -3.10 -0.04 -18.71 16 15 C 0.08 2.43 3.21 44.17 0.14 2.57 16 16 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 17 N -0.83 -25.63 8.94 -171.81 -1.54 -27.16 16 18 C -0.12 -4.06 4.78 30.60 0.15 -3.91 16 19 C 0.03 1.28 4.74 29.85 0.14 1.42 16 20 C -0.54 -27.39 9.11 25.60 0.23 -27.16 16 21 H 0.06 2.85 7.74 -2.91 -0.02 2.83 16 22 C 0.01 0.31 5.46 84.65 0.46 0.77 16 23 N -0.93 -51.96 13.29 21.45 0.28 -51.68 16 24 Si 0.95 40.99 29.54 68.60 2.03 43.02 16 25 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 26 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 27 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 28 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.42 4.65 7.95 -92.71 -0.74 3.91 16 32 H 0.16 3.69 5.52 -2.91 -0.02 3.67 16 33 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 34 H 0.13 4.00 6.49 -2.91 -0.02 3.98 16 35 H 0.42 6.53 8.14 -92.71 -0.75 5.78 16 36 H 0.36 11.21 7.55 -89.70 -0.68 10.53 16 37 H 0.34 10.94 8.58 -89.69 -0.77 10.17 16 38 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.00 0.01 6.87 -2.39 -0.02 -0.01 16 41 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -68.12 370.73 0.10 -68.02 By element: Atomic # 1 Polarization: 34.66 SS G_CDS: -1.82 Total: 32.83 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: 4.37 Total: -3.94 kcal Atomic # 7 Polarization: -102.07 SS G_CDS: -4.31 Total: -106.38 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -0.09 Total: -31.96 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -0.08 Total: -1.59 kcal Total: -68.12 0.10 -68.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424109093.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.962 kcal (2) G-P(sol) polarization free energy of solvation -68.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds