Wall clock time and date at job start Tue Mar 31 2020 23:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21287 * 119.99726 * 2 1 4 4 N 1.34778 * 119.99471 * 179.97438 * 2 1 3 5 5 C 1.39978 * 119.99453 * 185.31868 * 4 2 1 6 6 C 1.38736 * 120.03985 * 21.58609 * 5 4 2 7 7 C 1.38741 * 119.87288 * 179.78975 * 6 5 4 8 8 N 1.39971 * 120.02697 * 180.21247 * 7 6 5 9 9 C 1.34766 * 120.00227 * 146.73689 * 8 7 6 10 10 O 1.21294 * 120.00102 * 354.70048 * 9 8 7 11 11 C 1.50700 * 120.00342 * 174.70303 * 9 8 7 12 12 H 1.09010 * 109.46553 * 319.99773 * 11 9 8 13 13 N 1.46902 * 109.47546 * 200.00131 * 11 9 8 14 14 C 1.52998 * 109.47214 * 79.99723 * 11 9 8 15 15 C 1.53003 * 109.47245 * 185.00562 * 14 11 9 16 16 C 1.50694 * 109.47334 * 180.02562 * 15 14 11 17 17 H 1.08003 * 119.99979 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99953 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99799 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00202 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.47130 * 90.00057 * 20 18 16 22 22 H 1.48500 * 109.46973 * 209.99932 * 20 18 16 23 23 H 1.48503 * 109.46994 * 330.00226 * 20 18 16 24 24 C 1.38919 * 119.94894 * 0.48903 * 7 6 5 25 25 C 1.38159 * 120.08195 * 359.76707 * 24 7 6 26 26 C 1.38262 * 120.12396 * 359.97438 * 25 24 7 27 27 Cl 1.73592 * 119.97584 * 180.02562 * 26 25 24 28 28 H 1.09005 * 109.47463 * 239.99964 * 1 2 3 29 29 H 1.09001 * 109.46961 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.47320 * 119.99577 * 1 2 3 31 31 H 0.96994 * 120.00275 * 5.59997 * 4 2 1 32 32 H 1.07997 * 120.06531 * 0.02562 * 6 5 4 33 33 H 0.97000 * 119.99579 * 326.73931 * 8 7 6 34 34 H 1.00904 * 110.99688 * 299.99755 * 13 11 9 35 35 H 1.00896 * 110.99967 * 63.94797 * 13 11 9 36 36 H 1.08997 * 109.47113 * 305.00074 * 14 11 9 37 37 H 1.08991 * 109.47141 * 65.00515 * 14 11 9 38 38 H 1.09010 * 109.46590 * 300.00044 * 15 14 11 39 39 H 1.09000 * 109.47536 * 59.99588 * 15 14 11 40 40 H 0.96997 * 119.99804 * 179.97438 * 19 18 16 41 41 H 1.08000 * 119.96407 * 179.74368 * 24 7 6 42 42 H 1.07996 * 119.93942 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.5761 -1.1698 0.1129 6 6 4.2308 -0.0758 0.6599 7 6 5.6135 -0.0838 0.7736 8 7 6.2770 1.0164 1.3290 9 6 7.4031 0.8326 2.0462 10 8 7.7890 -0.2908 2.2920 11 6 8.1828 2.0226 2.5430 12 1 8.2013 2.7926 1.7716 13 7 9.5576 1.6110 2.8570 14 6 7.5167 2.5790 3.8030 15 6 8.2336 3.8593 4.2361 16 6 7.5779 4.4070 5.4775 17 1 6.7339 3.8934 5.9137 18 6 8.0555 5.5636 6.0563 19 7 7.4829 6.0418 7.1394 20 14 9.5157 6.4515 5.3022 21 1 9.0325 7.4435 4.3083 22 1 10.2754 7.1503 6.3699 23 1 10.4001 5.4666 4.6289 24 6 6.3394 -1.1822 0.3306 25 6 5.6858 -2.2685 -0.2187 26 6 4.3076 -2.2661 -0.3287 27 17 3.4903 -3.6333 -1.0188 28 1 -0.3634 -0.5138 0.8900 29 1 -0.3633 1.0277 0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 1.6993 -2.0053 -0.0811 32 1 3.6649 0.7789 1.0000 33 1 5.9262 1.9112 1.1977 34 1 9.5674 0.8972 3.5702 35 1 10.0402 1.2998 2.0274 36 1 6.4706 2.8017 3.5928 37 1 7.5774 1.8405 4.6023 38 1 9.2798 3.6365 4.4463 39 1 8.1730 4.5979 3.4367 40 1 7.8191 6.8553 7.5469 41 1 7.4161 -1.1870 0.4152 42 1 6.2525 -3.1210 -0.5628 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424109663.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:14 Heat of formation + Delta-G solvation = -81.000935 kcal Electronic energy + Delta-G solvation = -26239.497220 eV Core-core repulsion = 22243.951041 eV Total energy + Delta-G solvation = -3995.546180 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.10154 -41.30299 -39.54651 -37.72438 -36.93655 -36.38761 -35.29541 -34.79566 -32.31211 -32.08065 -30.92599 -29.47979 -28.36743 -25.67844 -24.56744 -23.47151 -22.22452 -21.77467 -21.08607 -19.62793 -18.99693 -18.50837 -18.02445 -17.72896 -17.28715 -16.92943 -16.64709 -16.27945 -16.23130 -15.76684 -15.36472 -15.14896 -14.99544 -14.76054 -14.67783 -14.56048 -14.07974 -13.75712 -13.48938 -13.47670 -13.22265 -13.13352 -12.82763 -12.73505 -12.58245 -12.14576 -12.04845 -11.96586 -11.75052 -11.60710 -11.34312 -11.20292 -11.13909 -10.85190 -10.70931 -9.75604 -9.56942 -9.04744 -8.24888 -6.28365 -0.14925 0.08999 0.97264 1.28134 1.40757 1.44012 1.51670 1.57944 1.77206 2.02127 2.42020 2.55368 3.11843 3.43001 3.57494 3.66434 3.75686 4.01750 4.03372 4.10330 4.17223 4.22460 4.45052 4.50934 4.61526 4.68150 4.72221 4.80375 4.96364 5.06233 5.09989 5.12012 5.15191 5.31383 5.49090 5.65167 5.73007 5.74772 6.01524 6.22375 6.26560 6.32214 6.50152 6.80526 6.89936 6.94283 7.36230 8.92130 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014904 B = 0.002479 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.292997 B =11290.696354 C =12784.383617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.504 3.496 3 O -0.563 6.563 4 N -0.659 5.659 5 C 0.176 3.824 6 C -0.170 4.170 7 C 0.167 3.833 8 N -0.663 5.663 9 C 0.492 3.508 10 O -0.550 6.550 11 C 0.089 3.911 12 H 0.127 0.873 13 N -0.815 5.815 14 C -0.082 4.082 15 C 0.002 3.998 16 C -0.532 4.532 17 H 0.027 0.973 18 C 0.001 3.999 19 N -0.956 5.956 20 Si 0.953 3.047 21 H -0.265 1.265 22 H -0.290 1.290 23 H -0.242 1.242 24 C -0.143 4.143 25 C -0.062 4.062 26 C -0.091 4.091 27 Cl -0.050 7.050 28 H 0.116 0.884 29 H 0.096 0.904 30 H 0.120 0.880 31 H 0.428 0.572 32 H 0.152 0.848 33 H 0.425 0.575 34 H 0.348 0.652 35 H 0.352 0.648 36 H 0.064 0.936 37 H 0.043 0.957 38 H 0.032 0.968 39 H 0.023 0.977 40 H 0.265 0.735 41 H 0.136 0.864 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.601 -19.842 -22.580 32.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.296 3.704 3 O -0.441 6.441 4 N -0.305 5.305 5 C 0.078 3.922 6 C -0.193 4.193 7 C 0.071 3.929 8 N -0.309 5.309 9 C 0.279 3.721 10 O -0.427 6.427 11 C -0.027 4.027 12 H 0.144 0.856 13 N -0.344 5.344 14 C -0.120 4.120 15 C -0.035 4.035 16 C -0.570 4.570 17 H 0.045 0.955 18 C -0.195 4.195 19 N -0.597 5.597 20 Si 0.776 3.224 21 H -0.190 1.190 22 H -0.216 1.216 23 H -0.165 1.165 24 C -0.164 4.164 25 C -0.082 4.082 26 C -0.121 4.121 27 Cl -0.021 7.021 28 H 0.134 0.866 29 H 0.114 0.886 30 H 0.138 0.862 31 H 0.268 0.732 32 H 0.169 0.831 33 H 0.264 0.736 34 H 0.162 0.838 35 H 0.165 0.835 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.051 0.949 39 H 0.042 0.958 40 H 0.073 0.927 41 H 0.154 0.846 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -10.894 -19.061 -22.077 31.135 hybrid contribution -0.380 -0.400 -0.023 0.552 sum -11.274 -19.460 -22.100 31.531 Atomic orbital electron populations 1.22005 0.86382 1.06955 1.07075 1.21993 0.92876 0.82047 0.73495 1.90681 1.71434 1.32926 1.49059 1.43692 1.03928 1.11374 1.71518 1.17259 0.84236 0.93625 0.97082 1.21187 0.92616 1.00971 1.04501 1.17872 0.90931 0.89461 0.94662 1.43767 1.25919 1.09859 1.51327 1.22766 0.80546 0.92796 0.76023 1.90669 1.68854 1.26255 1.56924 1.21705 0.88382 0.93389 0.99256 0.85565 1.59014 1.12042 1.48097 1.15270 1.21294 0.98785 0.97697 0.94261 1.19374 0.96736 0.93209 0.94180 1.21571 1.15382 1.08886 1.11181 0.95485 1.26039 1.00169 0.98175 0.95117 1.70088 1.43828 1.23219 1.22595 0.85611 0.79496 0.79016 0.78246 1.19044 1.21588 1.16481 1.21100 1.00984 0.93588 1.00718 1.20957 0.91507 0.98804 0.96919 1.20585 0.93009 0.91121 1.07427 1.98351 1.78750 1.41942 1.83035 0.86584 0.88555 0.86169 0.73236 0.83050 0.73642 0.83784 0.83453 0.91765 0.93853 0.94942 0.95842 0.92667 0.84586 0.82050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.05 10.32 71.24 0.74 -0.31 16 2 C 0.50 8.37 7.77 87.66 0.68 9.05 16 3 O -0.56 -14.66 14.07 -3.05 -0.04 -14.70 16 4 N -0.66 -9.87 5.23 -303.47 -1.59 -11.46 16 5 C 0.18 3.65 6.47 38.14 0.25 3.90 16 6 C -0.17 -4.25 8.67 22.51 0.20 -4.06 16 7 C 0.17 4.25 6.27 38.12 0.24 4.49 16 8 N -0.66 -16.46 5.34 -303.54 -1.62 -18.08 16 9 C 0.49 13.80 6.80 87.66 0.60 14.40 16 10 O -0.55 -17.84 13.95 -3.07 -0.04 -17.88 16 11 C 0.09 2.52 3.15 44.17 0.14 2.66 16 12 H 0.13 3.05 8.14 -2.38 -0.02 3.03 16 13 N -0.81 -22.76 8.44 -171.79 -1.45 -24.21 16 14 C -0.08 -3.06 4.78 30.59 0.15 -2.91 16 15 C 0.00 0.11 3.93 29.85 0.12 0.23 16 16 C -0.53 -30.85 9.66 25.60 0.25 -30.61 16 17 H 0.03 1.73 7.99 -2.91 -0.02 1.71 16 18 C 0.00 0.06 5.47 84.65 0.46 0.53 16 19 N -0.96 -61.01 13.96 21.45 0.30 -60.71 16 20 Si 0.95 44.74 27.47 68.60 1.88 46.63 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 23 H -0.24 -10.56 6.54 99.48 0.65 -9.91 16 24 C -0.14 -3.38 8.65 22.41 0.19 -3.19 16 25 C -0.06 -1.20 9.81 22.26 0.22 -0.98 16 26 C -0.09 -1.70 6.34 22.46 0.14 -1.55 16 27 Cl -0.05 -0.68 27.73 -2.72 -0.08 -0.75 16 28 H 0.12 0.28 8.14 -2.38 -0.02 0.26 16 29 H 0.10 0.75 8.12 -2.39 -0.02 0.73 16 30 H 0.12 0.12 8.14 -2.38 -0.02 0.10 16 31 H 0.43 3.78 7.67 -92.71 -0.71 3.07 16 32 H 0.15 4.19 5.55 -2.91 -0.02 4.18 16 33 H 0.43 9.02 8.82 -92.71 -0.82 8.20 16 34 H 0.35 10.22 8.58 -89.69 -0.77 9.45 16 35 H 0.35 8.02 9.06 -89.70 -0.81 7.20 16 36 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.03 1.50 6.81 -2.38 -0.02 1.48 16 39 H 0.02 1.01 7.57 -2.39 -0.02 0.99 16 40 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 41 H 0.14 3.40 6.43 -2.91 -0.02 3.38 16 42 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -77.96 368.71 -0.32 -78.29 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: -2.05 Total: 31.23 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: 4.36 Total: -8.36 kcal Atomic # 7 Polarization: -110.10 SS G_CDS: -4.36 Total: -114.46 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -0.09 Total: -32.58 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.88 Total: 46.63 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.08 Total: -0.75 kcal Total: -77.96 -0.32 -78.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424109663.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.715 kcal (2) G-P(sol) polarization free energy of solvation -77.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds