Wall clock time and date at job start Tue Mar 31 2020 23:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21291 * 119.99704 * 2 1 4 4 N 1.34776 * 119.99986 * 180.02562 * 2 1 3 5 5 C 1.40071 * 119.99565 * 185.49385 * 4 2 1 6 6 C 1.38890 * 119.99094 * 214.93467 * 5 4 2 7 7 C 1.38049 * 120.01835 * 180.25758 * 6 5 4 8 8 C 1.38848 * 120.01290 * 359.49026 * 7 6 5 9 9 N 1.40128 * 120.00554 * 180.23920 * 8 7 6 10 10 C 1.34775 * 119.99699 * 325.71820 * 9 8 7 11 11 O 1.21296 * 120.00419 * 354.51808 * 10 9 8 12 12 C 1.50697 * 119.99972 * 174.51071 * 10 9 8 13 13 H 1.08996 * 109.47464 * 320.00701 * 12 10 9 14 14 N 1.46900 * 109.47218 * 200.00234 * 12 10 9 15 15 C 1.53008 * 109.47065 * 80.00582 * 12 10 9 16 16 C 1.52999 * 109.47209 * 185.00014 * 15 12 10 17 17 C 1.50696 * 109.47064 * 179.97438 * 16 15 12 18 18 H 1.07998 * 120.00245 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99954 * 179.97438 * 17 16 15 20 20 N 1.31508 * 119.99974 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00053 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46895 * 90.00160 * 21 19 17 23 23 H 1.48492 * 109.47337 * 210.00105 * 21 19 17 24 24 H 1.48500 * 109.47062 * 330.00770 * 21 19 17 25 25 C 1.38950 * 119.99229 * 0.25166 * 8 7 6 26 26 Cl 1.73606 * 120.01430 * 180.02562 * 25 8 7 27 27 C 1.38161 * 119.97898 * 0.02562 * 25 8 7 28 28 H 1.08996 * 109.47307 * 269.99624 * 1 2 3 29 29 H 1.09003 * 109.47510 * 29.99585 * 1 2 3 30 30 H 1.09003 * 109.46802 * 149.99270 * 1 2 3 31 31 H 0.96996 * 120.00373 * 5.48635 * 4 2 1 32 32 H 1.07993 * 119.99274 * 0.02562 * 6 5 4 33 33 H 1.07999 * 119.99075 * 179.76657 * 7 6 5 34 34 H 0.96992 * 120.00452 * 145.72495 * 9 8 7 35 35 H 1.00900 * 110.99989 * 299.99933 * 14 12 10 36 36 H 1.00897 * 110.99948 * 63.95353 * 14 12 10 37 37 H 1.08997 * 109.46496 * 305.00009 * 15 12 10 38 38 H 1.08994 * 109.47113 * 64.99593 * 15 12 10 39 39 H 1.09000 * 109.46871 * 300.00000 * 16 15 12 40 40 H 1.09007 * 109.47093 * 59.99752 * 16 15 12 41 41 H 0.97006 * 119.99986 * 179.97438 * 20 19 17 42 42 H 1.08007 * 120.00746 * 179.97438 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5768 -1.1699 0.1156 6 6 4.3278 -2.1230 -0.5601 7 6 5.7032 -2.1295 -0.4418 8 6 6.3372 -1.1767 0.3443 9 7 7.7336 -1.1804 0.4603 10 6 8.4074 -2.3476 0.4517 11 8 7.8009 -3.3980 0.4438 12 6 9.9144 -2.3477 0.4515 13 1 10.2778 -1.5556 -0.2031 14 7 10.4040 -3.6456 -0.0318 15 6 10.4245 -2.1078 1.8740 16 6 11.9494 -1.9837 1.8548 17 6 12.4517 -1.7468 3.2557 18 1 11.7533 -1.6909 4.0776 19 6 13.8030 -1.6025 3.4883 20 7 14.6535 -1.6711 2.4876 21 14 14.4257 -1.3082 5.2247 22 1 14.7050 -2.6122 5.8781 23 1 15.6724 -0.5031 5.1737 24 1 13.3946 -0.5756 6.0028 25 6 5.5867 -0.2197 1.0163 26 17 6.3788 0.9724 1.9989 27 6 4.2098 -0.2170 0.9023 28 1 -0.3634 -0.0001 1.0276 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5140 31 1 1.6993 -2.0053 -0.0812 32 1 3.8354 -2.8615 -1.1753 33 1 6.2865 -2.8732 -0.9645 34 1 8.2154 -0.3430 0.5469 35 1 10.0804 -4.3969 0.5590 36 1 10.1344 -3.7990 -0.9919 37 1 9.9900 -1.1881 2.2654 38 1 10.1361 -2.9451 2.5094 39 1 12.3839 -2.9034 1.4632 40 1 12.2378 -1.1463 1.2193 41 1 15.6042 -1.5693 2.6512 42 1 3.6260 0.5265 1.4248 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424113864.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:20 Heat of formation + Delta-G solvation = -86.431075 kcal Electronic energy + Delta-G solvation = -26066.438391 eV Core-core repulsion = 22070.656742 eV Total energy + Delta-G solvation = -3995.781648 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.00535 -41.23334 -39.55567 -37.65999 -36.99260 -36.43007 -34.95979 -34.79831 -31.99091 -31.94304 -31.38636 -29.36188 -27.92260 -25.71180 -24.56266 -23.48294 -22.42735 -21.71734 -21.10118 -19.21425 -19.01245 -18.55209 -18.25325 -17.79476 -17.02923 -16.82363 -16.52309 -16.13634 -16.04414 -15.83719 -15.48585 -15.12731 -14.92432 -14.76260 -14.51851 -14.29024 -14.20574 -13.81754 -13.44583 -13.32037 -13.21603 -12.95266 -12.81790 -12.76027 -12.52960 -12.29430 -12.17976 -11.92368 -11.74744 -11.66127 -11.28281 -11.09711 -11.00775 -10.76844 -10.48997 -9.96726 -9.68636 -8.90456 -8.14011 -6.23667 -0.15353 0.07831 0.93999 1.28855 1.41521 1.42062 1.52709 1.57060 1.86691 2.07410 2.44094 2.54640 3.19089 3.45111 3.59642 3.68176 3.81838 3.97384 4.06086 4.13761 4.15158 4.27695 4.49537 4.54789 4.65423 4.67358 4.75735 4.89591 4.98653 5.00470 5.14495 5.18978 5.24018 5.34306 5.57453 5.75038 5.84516 5.98845 6.02481 6.22228 6.30611 6.39201 6.52687 6.88342 6.94740 7.09632 7.44123 8.96990 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.019904 B = 0.002323 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.429640 B =12049.396990 C =13094.693203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.503 3.497 3 O -0.577 6.577 4 N -0.658 5.658 5 C 0.138 3.862 6 C -0.105 4.105 7 C -0.099 4.099 8 C 0.131 3.869 9 N -0.663 5.663 10 C 0.496 3.504 11 O -0.548 6.548 12 C 0.089 3.911 13 H 0.115 0.885 14 N -0.814 5.814 15 C -0.085 4.085 16 C 0.040 3.960 17 C -0.543 4.543 18 H 0.054 0.946 19 C 0.002 3.998 20 N -0.928 5.928 21 Si 0.957 3.043 22 H -0.275 1.275 23 H -0.282 1.282 24 H -0.266 1.266 25 C -0.057 4.057 26 Cl -0.061 7.061 27 C -0.104 4.104 28 H 0.113 0.887 29 H 0.095 0.905 30 H 0.116 0.884 31 H 0.434 0.566 32 H 0.171 0.829 33 H 0.143 0.857 34 H 0.420 0.580 35 H 0.348 0.652 36 H 0.350 0.650 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.010 0.990 40 H -0.005 1.005 41 H 0.262 0.738 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.463 0.045 -8.689 32.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.294 3.706 3 O -0.456 6.456 4 N -0.306 5.306 5 C 0.042 3.958 6 C -0.126 4.126 7 C -0.120 4.120 8 C 0.035 3.965 9 N -0.309 5.309 10 C 0.283 3.717 11 O -0.425 6.425 12 C -0.027 4.027 13 H 0.132 0.868 14 N -0.344 5.344 15 C -0.123 4.123 16 C 0.003 3.997 17 C -0.581 4.581 18 H 0.072 0.928 19 C -0.196 4.196 20 N -0.568 5.568 21 Si 0.783 3.217 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.191 1.191 25 C -0.086 4.086 26 Cl -0.032 7.032 27 C -0.126 4.126 28 H 0.132 0.868 29 H 0.114 0.886 30 H 0.135 0.865 31 H 0.274 0.726 32 H 0.189 0.811 33 H 0.161 0.839 34 H 0.259 0.741 35 H 0.162 0.838 36 H 0.164 0.836 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.028 0.972 40 H 0.013 0.987 41 H 0.071 0.929 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -30.485 0.429 -8.518 31.656 hybrid contribution 0.023 0.259 0.913 0.950 sum -30.463 0.688 -7.604 31.405 Atomic orbital electron populations 1.21930 0.86556 1.06900 1.06644 1.21988 0.92778 0.82339 0.73519 1.90773 1.71875 1.33067 1.49842 1.43619 1.03600 1.11096 1.72310 1.17589 0.84677 0.96848 0.96696 1.21162 0.92379 0.99964 0.99093 1.20997 0.95067 0.98329 0.97604 1.17731 0.83626 0.97305 0.97863 1.43773 1.04605 1.10719 1.71828 1.22666 0.92493 0.82932 0.73607 1.90648 1.70648 1.31808 1.49413 1.21649 0.85631 0.95595 0.99782 0.86771 1.58955 1.64820 1.02778 1.07814 1.21426 0.98080 1.00535 0.92281 1.18823 0.90274 0.95893 0.94744 1.21720 0.92449 1.48824 0.95126 0.92787 1.25874 0.97437 0.95303 1.00972 1.70095 1.02616 1.51332 1.32749 0.85567 0.77826 0.78288 0.80063 1.20047 1.20756 1.19064 1.20645 0.92876 0.95728 0.99387 1.98385 1.80103 1.55857 1.68865 1.20793 0.91643 1.00656 0.99489 0.86826 0.88626 0.86541 0.72576 0.81111 0.83945 0.74144 0.83788 0.83643 0.91822 0.93508 0.97193 0.98699 0.92941 0.84559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.50 10.31 71.24 0.73 0.23 16 2 C 0.50 6.80 7.66 87.66 0.67 7.47 16 3 O -0.58 -14.16 14.89 -3.06 -0.05 -14.20 16 4 N -0.66 -6.94 5.34 -303.39 -1.62 -8.56 16 5 C 0.14 2.47 6.25 38.13 0.24 2.71 16 6 C -0.11 -1.72 9.96 22.38 0.22 -1.50 16 7 C -0.10 -2.21 8.65 22.37 0.19 -2.02 16 8 C 0.13 3.35 6.26 38.13 0.24 3.59 16 9 N -0.66 -17.39 5.06 -303.30 -1.53 -18.93 16 10 C 0.50 14.62 6.80 87.66 0.60 15.21 16 11 O -0.55 -17.87 14.01 -3.08 -0.04 -17.92 16 12 C 0.09 2.85 3.15 44.17 0.14 2.99 16 13 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 14 N -0.81 -25.71 8.44 -171.80 -1.45 -27.16 16 15 C -0.08 -3.38 4.78 30.60 0.15 -3.24 16 16 C 0.04 2.06 4.86 29.85 0.15 2.20 16 17 C -0.54 -30.94 9.11 25.60 0.23 -30.71 16 18 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 19 C 0.00 0.12 5.46 84.66 0.46 0.58 16 20 N -0.93 -56.58 13.29 21.45 0.28 -56.29 16 21 Si 0.96 44.88 29.54 68.60 2.03 46.91 16 22 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 25 C -0.06 -1.44 6.33 22.42 0.14 -1.30 16 26 Cl -0.06 -1.57 27.94 -2.72 -0.08 -1.65 16 27 C -0.10 -2.45 8.43 22.40 0.19 -2.26 16 28 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 29 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.12 -0.40 8.14 -2.39 -0.02 -0.42 16 31 H 0.43 0.83 8.82 -92.71 -0.82 0.01 16 32 H 0.17 1.49 8.06 -2.91 -0.02 1.46 16 33 H 0.14 3.31 6.49 -2.91 -0.02 3.29 16 34 H 0.42 10.14 8.05 -92.71 -0.75 9.40 16 35 H 0.35 11.14 8.58 -89.69 -0.77 10.37 16 36 H 0.35 9.15 9.06 -89.70 -0.81 8.34 16 37 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.01 0.55 7.75 -2.39 -0.02 0.53 16 40 H -0.01 -0.29 8.14 -2.38 -0.02 -0.31 16 41 H 0.26 15.05 8.31 -92.70 -0.77 14.28 16 42 H 0.14 3.44 6.52 -2.91 -0.02 3.42 16 Total: -1.00 -77.59 374.21 -0.14 -77.73 By element: Atomic # 1 Polarization: 28.15 SS G_CDS: -2.04 Total: 26.11 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 4.35 Total: -6.04 kcal Atomic # 7 Polarization: -106.63 SS G_CDS: -4.32 Total: -110.95 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -0.09 Total: -32.12 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.08 Total: -1.65 kcal Total: -77.59 -0.14 -77.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424113864.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.696 kcal (2) G-P(sol) polarization free energy of solvation -77.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds