Wall clock time and date at job start Tue Mar 31 2020 23:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21296 * 119.99874 * 2 1 4 4 N 1.34779 * 119.99991 * 179.97438 * 2 1 3 5 5 C 1.40071 * 119.99537 * 185.48979 * 4 2 1 6 6 C 1.38695 * 120.09272 * 34.26420 * 5 4 2 7 7 C 1.38300 * 119.98742 * 179.97438 * 6 5 4 8 8 Cl 1.73602 * 119.91657 * 179.97438 * 7 6 5 9 9 C 1.38415 * 120.16946 * 359.74128 * 7 6 5 10 10 C 1.38188 * 120.18012 * 0.51324 * 9 7 6 11 11 C 1.38706 * 120.01182 * 359.48640 * 10 9 7 12 12 N 1.40121 * 120.08287 * 180.22984 * 11 10 9 13 13 C 1.34780 * 119.99715 * 25.54448 * 12 11 10 14 14 O 1.21296 * 120.00191 * 356.10689 * 13 12 11 15 15 C 1.50704 * 119.99641 * 176.11909 * 13 12 11 16 16 H 1.08997 * 109.46932 * 319.99142 * 15 13 12 17 17 N 1.46904 * 109.46942 * 199.99348 * 15 13 12 18 18 C 1.52995 * 109.47422 * 79.99410 * 15 13 12 19 19 C 1.53002 * 109.47116 * 185.00001 * 18 15 13 20 20 C 1.50697 * 109.47021 * 180.02562 * 19 18 15 21 21 H 1.08003 * 120.00230 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99962 * 180.02562 * 20 19 18 23 23 N 1.31519 * 119.99754 * 180.02562 * 22 20 19 24 24 Si 1.86791 * 119.99933 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.47105 * 90.00469 * 24 22 20 26 26 H 1.48498 * 109.47418 * 210.00398 * 24 22 20 27 27 H 1.48499 * 109.47398 * 330.00400 * 24 22 20 28 28 H 1.08999 * 109.47550 * 240.00041 * 1 2 3 29 29 H 1.09001 * 109.47262 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47460 * 120.00013 * 1 2 3 31 31 H 0.96994 * 120.00263 * 5.49541 * 4 2 1 32 32 H 1.08003 * 120.01241 * 359.94604 * 6 5 4 33 33 H 1.08000 * 119.90558 * 180.25484 * 9 7 6 34 34 H 1.07997 * 119.99284 * 179.76995 * 10 9 7 35 35 H 0.96995 * 119.99773 * 205.53385 * 12 11 10 36 36 H 1.00894 * 110.99801 * 300.00128 * 17 15 13 37 37 H 1.00906 * 110.99604 * 63.95506 * 17 15 13 38 38 H 1.08995 * 109.47108 * 305.00158 * 18 15 13 39 39 H 1.09004 * 109.47088 * 64.99684 * 18 15 13 40 40 H 1.09005 * 109.46756 * 299.99881 * 19 18 15 41 41 H 1.08993 * 109.47033 * 60.00107 * 19 18 15 42 42 H 0.97003 * 119.99449 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5767 -1.1698 0.1166 6 6 4.2117 -0.2125 0.8937 7 6 5.5901 -0.2175 1.0072 8 17 6.3830 0.9821 1.9799 9 6 6.3386 -1.1793 0.3511 10 6 5.7135 -2.1332 -0.4292 11 6 4.3316 -2.1353 -0.5483 12 7 3.6959 -3.1048 -1.3353 13 6 4.2920 -4.2941 -1.5514 14 8 5.4085 -4.4995 -1.1241 15 6 3.5714 -5.3687 -2.3241 16 1 2.5205 -5.3812 -2.0352 17 7 4.1763 -6.6742 -2.0277 18 6 3.6850 -5.0825 -3.8227 19 6 2.8504 -6.1015 -4.6013 20 6 2.9628 -5.8200 -6.0774 21 1 3.5686 -4.9964 -6.4256 22 6 2.2914 -6.6132 -6.9836 23 7 2.3899 -6.3678 -8.2719 24 14 1.2431 -8.0372 -6.3815 25 1 -0.1445 -7.5645 -6.1439 26 1 1.2314 -9.1114 -7.4067 27 1 1.8090 -8.5677 -5.1152 28 1 -0.3634 -0.5138 0.8900 29 1 -0.3634 1.0277 -0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 1.6992 -2.0053 -0.0795 32 1 3.6301 0.5370 1.4098 33 1 7.4144 -1.1816 0.4460 34 1 6.3008 -2.8800 -0.9428 35 1 2.8269 -2.9200 -1.7244 36 1 5.1513 -6.6881 -2.2866 37 1 4.0569 -6.9155 -1.0552 38 1 3.3172 -4.0776 -4.0296 39 1 4.7284 -5.1577 -4.1289 40 1 3.2183 -7.1065 -4.3943 41 1 1.8070 -6.0263 -4.2951 42 1 1.9179 -6.9261 -8.9094 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424114248.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:41 Heat of formation + Delta-G solvation = -53.475223 kcal Electronic energy + Delta-G solvation = -26517.953542 eV Core-core repulsion = 22523.600966 eV Total energy + Delta-G solvation = -3994.352575 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.40656 -40.21917 -38.67440 -36.83125 -35.63976 -35.21576 -34.73635 -32.87977 -31.32229 -30.63929 -30.08887 -28.85050 -26.85650 -24.31579 -23.71088 -22.30923 -20.98707 -20.68661 -20.09357 -18.85595 -17.61339 -17.41269 -17.28652 -16.77102 -15.95542 -15.89403 -15.66370 -15.20102 -14.86428 -14.66568 -14.39919 -14.21400 -13.91537 -13.68865 -13.64605 -13.08995 -12.83759 -12.72212 -12.68155 -12.56131 -12.32775 -12.13512 -11.79771 -11.25733 -11.15504 -10.96996 -10.78702 -10.58403 -10.39113 -10.28942 -10.03945 -9.88481 -9.68276 -9.20454 -8.82123 -8.66911 -8.53861 -8.14379 -6.06404 -4.04976 0.71790 0.97650 1.89326 2.14836 2.33567 2.50775 2.80144 3.29106 3.38161 3.40106 3.44386 4.24403 4.37355 4.44211 4.55826 4.68510 4.76293 4.83159 4.89483 4.97509 5.02342 5.14388 5.28814 5.34295 5.37039 5.44525 5.61129 5.81919 5.91397 6.06265 6.10466 6.14199 6.30575 6.61880 6.71944 6.82825 6.96003 7.15546 7.24148 7.45782 7.48406 7.62428 7.77574 7.82124 8.49665 8.97891 9.55879 11.06973 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013891 B = 0.002629 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.156806 B =10646.791118 C =11795.472999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.511 3.489 3 O -0.520 6.520 4 N -0.675 5.675 5 C 0.124 3.876 6 C -0.093 4.093 7 C -0.038 4.038 8 Cl -0.070 7.070 9 C -0.102 4.102 10 C -0.106 4.106 11 C 0.135 3.865 12 N -0.668 5.668 13 C 0.485 3.515 14 O -0.524 6.524 15 C 0.078 3.922 16 H 0.102 0.898 17 N -0.808 5.808 18 C -0.090 4.090 19 C -0.003 4.003 20 C -0.524 4.524 21 H 0.069 0.931 22 C 0.066 3.934 23 N -0.904 5.904 24 Si 0.880 3.120 25 H -0.279 1.279 26 H -0.289 1.289 27 H -0.260 1.260 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.411 0.589 32 H 0.146 0.854 33 H 0.138 0.862 34 H 0.168 0.832 35 H 0.412 0.588 36 H 0.352 0.648 37 H 0.337 0.663 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.035 0.965 41 H 0.008 0.992 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.049 10.589 22.385 24.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.300 3.700 3 O -0.394 6.394 4 N -0.322 5.322 5 C 0.027 3.973 6 C -0.114 4.114 7 C -0.066 4.066 8 Cl -0.041 7.041 9 C -0.122 4.122 10 C -0.127 4.127 11 C 0.037 3.963 12 N -0.313 5.313 13 C 0.273 3.727 14 O -0.399 6.399 15 C -0.038 4.038 16 H 0.120 0.880 17 N -0.336 5.336 18 C -0.128 4.128 19 C -0.041 4.041 20 C -0.562 4.562 21 H 0.087 0.913 22 C -0.135 4.135 23 N -0.543 5.543 24 Si 0.707 3.293 25 H -0.205 1.205 26 H -0.216 1.216 27 H -0.184 1.184 28 H 0.111 0.889 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.248 0.752 32 H 0.164 0.836 33 H 0.156 0.844 34 H 0.185 0.815 35 H 0.248 0.752 36 H 0.167 0.833 37 H 0.149 0.851 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.053 0.947 41 H 0.027 0.973 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.436 10.864 22.039 24.575 hybrid contribution -0.628 -0.304 0.640 0.947 sum -1.065 10.560 22.680 25.040 Atomic orbital electron populations 1.21951 0.90190 1.06303 1.04925 1.21112 0.91058 0.82922 0.74928 1.90779 1.70585 1.31040 1.47040 1.43543 1.04722 1.10224 1.73697 1.17193 0.82807 0.98758 0.98500 1.20699 0.92715 0.99537 0.98472 1.20662 0.92382 0.94077 0.99453 1.98363 1.80117 1.55907 1.69763 1.21027 1.00588 0.93504 0.97068 1.21540 0.92283 0.99341 0.99520 1.17779 0.91994 0.91924 0.94644 1.43765 1.23412 1.14073 1.50041 1.23080 0.87312 0.83150 0.79182 1.90591 1.18898 1.80266 1.50191 1.21939 0.98621 0.85412 0.97812 0.87989 1.59016 1.23193 1.25853 1.25546 1.21529 1.02381 1.00813 0.88088 1.19479 0.94010 0.95408 0.95154 1.21154 1.30150 1.15664 0.89260 0.91288 1.25023 0.96353 0.97390 0.94719 1.69925 1.43457 1.39814 1.01144 0.86771 0.80781 0.82577 0.79172 1.20519 1.21562 1.18415 0.88859 0.88336 0.88642 0.75230 0.83630 0.84443 0.81540 0.75182 0.83316 0.85062 0.92138 0.91877 0.94686 0.97324 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.76 10.32 36.00 0.37 -0.39 16 2 C 0.51 4.42 7.67 -10.99 -0.08 4.33 16 3 O -0.52 -6.77 14.85 5.54 0.08 -6.69 16 4 N -0.67 -5.23 4.96 -9.74 -0.05 -5.27 16 5 C 0.12 1.33 6.28 -83.48 -0.52 0.80 16 6 C -0.09 -1.08 8.43 -39.39 -0.33 -1.41 16 7 C -0.04 -0.43 6.32 -39.49 -0.25 -0.68 16 8 Cl -0.07 -0.74 28.95 -51.86 -1.50 -2.24 16 9 C -0.10 -1.13 9.82 -39.53 -0.39 -1.52 16 10 C -0.11 -1.30 8.79 -39.43 -0.35 -1.64 16 11 C 0.13 1.54 6.47 -83.45 -0.54 1.00 16 12 N -0.67 -6.90 5.15 -9.72 -0.05 -6.95 16 13 C 0.49 6.05 6.96 -10.98 -0.08 5.97 16 14 O -0.52 -7.65 13.18 5.54 0.07 -7.58 16 15 C 0.08 1.02 3.15 -68.86 -0.22 0.81 16 16 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 17 N -0.81 -10.78 8.44 -5.65 -0.05 -10.83 16 18 C -0.09 -1.54 4.78 -26.73 -0.13 -1.67 16 19 C 0.00 -0.07 3.93 -27.88 -0.11 -0.18 16 20 C -0.52 -14.31 9.66 -34.44 -0.33 -14.64 16 21 H 0.07 2.04 7.99 -52.48 -0.42 1.62 16 22 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 23 N -0.90 -27.42 13.96 55.43 0.77 -26.64 16 24 Si 0.88 21.05 27.47 -169.99 -4.67 16.38 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.26 -5.98 6.54 56.52 0.37 -5.61 16 28 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.10 0.47 8.12 -51.93 -0.42 0.04 16 30 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.41 1.94 8.13 -40.82 -0.33 1.61 16 32 H 0.15 1.75 6.49 -52.48 -0.34 1.41 16 33 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.17 2.24 5.52 -52.49 -0.29 1.95 16 35 H 0.41 3.31 7.94 -40.82 -0.32 2.98 16 36 H 0.35 4.85 8.58 -39.29 -0.34 4.51 16 37 H 0.34 3.76 9.06 -39.29 -0.36 3.40 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.03 0.80 6.81 -51.93 -0.35 0.44 16 41 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 369.05 15.07 5.56 5.56 Total: -1.00 -34.41 369.05 -8.15 -42.56 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -5.27 Total: 9.15 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -3.05 Total: -7.44 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: 0.63 Total: -49.70 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: 0.16 Total: -14.27 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.41 -8.15 -42.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424114248.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.915 kcal (2) G-P(sol) polarization free energy of solvation -34.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds