Wall clock time and date at job start Tue Mar 31 2020 23:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21296 * 119.99874 * 2 1 4 4 N 1.34779 * 119.99991 * 179.97438 * 2 1 3 5 5 C 1.40071 * 119.99537 * 185.48979 * 4 2 1 6 6 C 1.38695 * 120.09272 * 34.26420 * 5 4 2 7 7 C 1.38300 * 119.98742 * 179.97438 * 6 5 4 8 8 Cl 1.73602 * 119.91657 * 179.97438 * 7 6 5 9 9 C 1.38415 * 120.16946 * 359.74128 * 7 6 5 10 10 C 1.38188 * 120.18012 * 0.51324 * 9 7 6 11 11 C 1.38706 * 120.01182 * 359.48640 * 10 9 7 12 12 N 1.40121 * 120.08287 * 180.22984 * 11 10 9 13 13 C 1.34780 * 119.99715 * 25.54448 * 12 11 10 14 14 O 1.21296 * 120.00191 * 356.10689 * 13 12 11 15 15 C 1.50704 * 119.99641 * 176.11909 * 13 12 11 16 16 H 1.08997 * 109.46932 * 319.99142 * 15 13 12 17 17 N 1.46904 * 109.46942 * 199.99348 * 15 13 12 18 18 C 1.52995 * 109.47422 * 79.99410 * 15 13 12 19 19 C 1.53002 * 109.47116 * 185.00001 * 18 15 13 20 20 C 1.50697 * 109.47021 * 180.02562 * 19 18 15 21 21 H 1.08003 * 120.00230 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99962 * 180.02562 * 20 19 18 23 23 N 1.31519 * 119.99754 * 180.02562 * 22 20 19 24 24 Si 1.86791 * 119.99933 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.47105 * 90.00469 * 24 22 20 26 26 H 1.48498 * 109.47418 * 210.00398 * 24 22 20 27 27 H 1.48499 * 109.47398 * 330.00400 * 24 22 20 28 28 H 1.08999 * 109.47550 * 240.00041 * 1 2 3 29 29 H 1.09001 * 109.47262 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47460 * 120.00013 * 1 2 3 31 31 H 0.96994 * 120.00263 * 5.49541 * 4 2 1 32 32 H 1.08003 * 120.01241 * 359.94604 * 6 5 4 33 33 H 1.08000 * 119.90558 * 180.25484 * 9 7 6 34 34 H 1.07997 * 119.99284 * 179.76995 * 10 9 7 35 35 H 0.96995 * 119.99773 * 205.53385 * 12 11 10 36 36 H 1.00894 * 110.99801 * 300.00128 * 17 15 13 37 37 H 1.00906 * 110.99604 * 63.95506 * 17 15 13 38 38 H 1.08995 * 109.47108 * 305.00158 * 18 15 13 39 39 H 1.09004 * 109.47088 * 64.99684 * 18 15 13 40 40 H 1.09005 * 109.46756 * 299.99881 * 19 18 15 41 41 H 1.08993 * 109.47033 * 60.00107 * 19 18 15 42 42 H 0.97003 * 119.99449 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5767 -1.1698 0.1166 6 6 4.2117 -0.2125 0.8937 7 6 5.5901 -0.2175 1.0072 8 17 6.3830 0.9821 1.9799 9 6 6.3386 -1.1793 0.3511 10 6 5.7135 -2.1332 -0.4292 11 6 4.3316 -2.1353 -0.5483 12 7 3.6959 -3.1048 -1.3353 13 6 4.2920 -4.2941 -1.5514 14 8 5.4085 -4.4995 -1.1241 15 6 3.5714 -5.3687 -2.3241 16 1 2.5205 -5.3812 -2.0352 17 7 4.1763 -6.6742 -2.0277 18 6 3.6850 -5.0825 -3.8227 19 6 2.8504 -6.1015 -4.6013 20 6 2.9628 -5.8200 -6.0774 21 1 3.5686 -4.9964 -6.4256 22 6 2.2914 -6.6132 -6.9836 23 7 2.3899 -6.3678 -8.2719 24 14 1.2431 -8.0372 -6.3815 25 1 -0.1445 -7.5645 -6.1439 26 1 1.2314 -9.1114 -7.4067 27 1 1.8090 -8.5677 -5.1152 28 1 -0.3634 -0.5138 0.8900 29 1 -0.3634 1.0277 -0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 1.6992 -2.0053 -0.0795 32 1 3.6301 0.5370 1.4098 33 1 7.4144 -1.1816 0.4460 34 1 6.3008 -2.8800 -0.9428 35 1 2.8269 -2.9200 -1.7244 36 1 5.1513 -6.6881 -2.2866 37 1 4.0569 -6.9155 -1.0552 38 1 3.3172 -4.0776 -4.0296 39 1 4.7284 -5.1577 -4.1289 40 1 3.2183 -7.1065 -4.3943 41 1 1.8070 -6.0263 -4.2951 42 1 1.9179 -6.9261 -8.9094 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424114248.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:40 Heat of formation + Delta-G solvation = -79.386546 kcal Electronic energy + Delta-G solvation = -26519.077141 eV Core-core repulsion = 22523.600966 eV Total energy + Delta-G solvation = -3995.476174 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.27444 -41.08548 -39.55004 -37.70952 -36.91592 -36.06771 -35.61059 -34.78660 -32.29224 -31.98724 -30.95517 -29.54240 -28.29303 -25.64719 -24.64021 -23.33721 -22.15123 -21.69277 -21.25615 -19.72579 -18.88087 -18.49070 -18.24380 -17.98068 -17.06529 -16.72131 -16.47442 -16.26490 -16.13411 -15.80605 -15.55802 -15.15310 -15.01308 -14.76662 -14.66078 -14.51551 -14.03588 -13.67437 -13.50783 -13.46127 -13.21429 -13.10405 -12.93657 -12.78429 -12.52838 -12.10480 -11.92001 -11.74065 -11.61893 -11.57283 -11.36987 -11.25223 -11.12586 -10.97315 -10.68724 -9.74710 -9.64265 -9.00354 -8.22805 -6.26450 -0.16129 0.08198 1.03164 1.34808 1.42235 1.46889 1.48389 1.59818 1.73641 2.00620 2.43832 2.52506 3.14299 3.40009 3.62444 3.69939 3.74044 3.96345 4.04161 4.12635 4.17443 4.24723 4.47908 4.52416 4.65629 4.69523 4.73012 4.82797 4.95760 5.06407 5.11897 5.15164 5.20466 5.25758 5.52694 5.67773 5.73704 5.76999 6.01952 6.21685 6.26926 6.34274 6.51612 6.83441 6.87828 7.00778 7.38435 8.94176 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013891 B = 0.002629 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.156806 B =10646.791118 C =11795.472999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.507 3.493 3 O -0.570 6.570 4 N -0.663 5.663 5 C 0.128 3.872 6 C -0.102 4.102 7 C -0.043 4.043 8 Cl -0.065 7.065 9 C -0.103 4.103 10 C -0.118 4.118 11 C 0.127 3.873 12 N -0.654 5.654 13 C 0.490 3.510 14 O -0.546 6.546 15 C 0.090 3.910 16 H 0.133 0.867 17 N -0.817 5.817 18 C -0.083 4.083 19 C 0.003 3.997 20 C -0.531 4.531 21 H 0.026 0.974 22 C 0.000 4.000 23 N -0.958 5.958 24 Si 0.953 3.047 25 H -0.263 1.263 26 H -0.294 1.294 27 H -0.240 1.240 28 H 0.119 0.881 29 H 0.094 0.906 30 H 0.117 0.883 31 H 0.428 0.572 32 H 0.140 0.860 33 H 0.151 0.849 34 H 0.155 0.845 35 H 0.424 0.576 36 H 0.348 0.652 37 H 0.352 0.648 38 H 0.066 0.934 39 H 0.041 0.959 40 H 0.031 0.969 41 H 0.027 0.973 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.148 9.657 24.514 26.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.298 3.702 3 O -0.448 6.448 4 N -0.311 5.311 5 C 0.031 3.969 6 C -0.124 4.124 7 C -0.071 4.071 8 Cl -0.036 7.036 9 C -0.123 4.123 10 C -0.139 4.139 11 C 0.029 3.971 12 N -0.299 5.299 13 C 0.278 3.722 14 O -0.423 6.423 15 C -0.026 4.026 16 H 0.151 0.849 17 N -0.346 5.346 18 C -0.121 4.121 19 C -0.035 4.035 20 C -0.569 4.569 21 H 0.044 0.956 22 C -0.196 4.196 23 N -0.599 5.599 24 Si 0.777 3.223 25 H -0.188 1.188 26 H -0.221 1.221 27 H -0.163 1.163 28 H 0.137 0.863 29 H 0.112 0.888 30 H 0.135 0.865 31 H 0.268 0.732 32 H 0.158 0.842 33 H 0.169 0.831 34 H 0.172 0.828 35 H 0.263 0.737 36 H 0.162 0.838 37 H 0.166 0.834 38 H 0.085 0.915 39 H 0.060 0.940 40 H 0.049 0.951 41 H 0.045 0.955 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.576 9.924 24.199 26.282 hybrid contribution 0.097 0.088 -0.046 0.139 sum -2.479 10.012 24.153 26.263 Atomic orbital electron populations 1.21996 0.86482 1.06828 1.07150 1.21963 0.92699 0.82128 0.73363 1.90764 1.71828 1.32783 1.49380 1.43548 1.03536 1.11105 1.72931 1.17198 0.84217 0.97879 0.97618 1.20765 0.92878 0.99780 0.98966 1.20762 0.92523 0.94255 0.99541 1.98361 1.80011 1.55667 1.69578 1.21143 1.01340 0.93126 0.96698 1.21509 0.92811 0.99534 1.00027 1.17779 0.91890 0.92361 0.95077 1.43568 1.23711 1.13155 1.49485 1.22869 0.86839 0.83459 0.79058 1.90602 1.19777 1.80672 1.51215 1.21738 1.00422 0.85593 0.94800 0.84937 1.59016 1.22961 1.25838 1.26789 1.21309 1.00215 0.99909 0.90699 1.19372 0.95803 0.96349 0.91969 1.21592 1.28682 1.14088 0.92580 0.95570 1.26058 0.98138 1.00750 0.94679 1.70100 1.45321 1.41626 1.02848 0.85606 0.79327 0.78350 0.79037 1.18788 1.22055 1.16340 0.86251 0.88751 0.86483 0.73239 0.84202 0.83082 0.82808 0.73676 0.83824 0.83442 0.91495 0.93988 0.95104 0.95456 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 10.32 71.23 0.74 -0.22 16 2 C 0.51 7.88 7.67 87.65 0.67 8.55 16 3 O -0.57 -14.58 14.85 -3.08 -0.05 -14.63 16 4 N -0.66 -8.81 4.96 -303.10 -1.50 -10.31 16 5 C 0.13 2.58 6.28 38.22 0.24 2.82 16 6 C -0.10 -2.32 8.43 22.39 0.19 -2.13 16 7 C -0.04 -0.96 6.32 22.33 0.14 -0.82 16 8 Cl -0.07 -1.34 28.95 -2.72 -0.08 -1.42 16 9 C -0.10 -2.25 9.82 22.30 0.22 -2.03 16 10 C -0.12 -2.83 8.79 22.37 0.20 -2.63 16 11 C 0.13 2.73 6.47 38.21 0.25 2.98 16 12 N -0.65 -12.09 5.15 -303.04 -1.56 -13.65 16 13 C 0.49 11.27 6.96 87.66 0.61 11.88 16 14 O -0.55 -15.35 13.18 -3.08 -0.04 -15.39 16 15 C 0.09 2.12 3.15 44.17 0.14 2.26 16 16 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 17 N -0.82 -19.84 8.44 -171.80 -1.45 -21.29 16 18 C -0.08 -2.74 4.78 30.59 0.15 -2.59 16 19 C 0.00 0.11 3.93 29.85 0.12 0.22 16 20 C -0.53 -29.28 9.66 25.60 0.25 -29.03 16 21 H 0.03 1.61 7.99 -2.91 -0.02 1.58 16 22 C 0.00 -0.02 5.47 84.65 0.46 0.44 16 23 N -0.96 -59.43 13.96 21.45 0.30 -59.13 16 24 Si 0.95 42.57 27.47 68.60 1.88 44.45 16 25 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 26 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 27 H -0.24 -9.89 6.54 99.48 0.65 -9.24 16 28 H 0.12 0.11 8.14 -2.39 -0.02 0.09 16 29 H 0.09 0.69 8.12 -2.39 -0.02 0.67 16 30 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.43 2.63 8.13 -92.71 -0.75 1.88 16 32 H 0.14 3.35 6.49 -2.91 -0.02 3.33 16 33 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 34 H 0.15 4.14 5.52 -2.91 -0.02 4.12 16 35 H 0.42 5.54 7.94 -92.71 -0.74 4.80 16 36 H 0.35 9.10 8.58 -89.70 -0.77 8.34 16 37 H 0.35 6.84 9.06 -89.69 -0.81 6.03 16 38 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 40 H 0.03 1.33 6.81 -2.38 -0.02 1.31 16 41 H 0.03 1.05 7.57 -2.39 -0.02 1.03 16 42 H 0.26 15.32 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -77.04 369.05 -0.14 -77.18 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: -2.01 Total: 24.48 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: 4.36 Total: -10.30 kcal Atomic # 7 Polarization: -100.17 SS G_CDS: -4.21 Total: -104.38 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -0.09 Total: -30.01 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 1.88 Total: 44.45 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.08 Total: -1.42 kcal Total: -77.04 -0.14 -77.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424114248.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.202 kcal (2) G-P(sol) polarization free energy of solvation -77.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds