Wall clock time and date at job start Tue Mar 31 2020 23:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46907 * 110.99622 * 2 1 4 4 C 1.46896 * 110.99910 * 123.95458 * 2 1 3 5 5 C 1.50695 * 109.47195 * 75.64148 * 4 2 1 6 6 C 1.38119 * 119.96400 * 257.19077 * 5 4 2 7 7 C 1.38903 * 119.93412 * 179.76686 * 6 5 4 8 8 N 1.39762 * 120.06156 * 180.24939 * 7 6 5 9 9 C 1.34780 * 120.00250 * 213.92180 * 8 7 6 10 10 O 1.21378 * 119.99575 * 4.48887 * 9 8 7 11 11 C 1.49344 * 120.00157 * 184.47708 * 9 8 7 12 12 O 1.21357 * 119.99993 * 0.02562 * 11 9 8 13 13 N 1.34770 * 119.99919 * 180.02562 * 11 9 8 14 14 C 1.46505 * 119.99872 * 180.02562 * 13 11 9 15 15 C 1.50706 * 109.47067 * 179.97438 * 14 13 11 16 16 H 1.07997 * 119.99998 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99764 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00253 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99625 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47445 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47095 * 120.00060 * 19 17 15 22 22 H 1.48500 * 109.47142 * 240.00024 * 19 17 15 23 23 C 1.38945 * 119.87272 * 0.51245 * 7 6 5 24 24 C 1.38069 * 119.93833 * 359.74176 * 23 7 6 25 25 C 1.38373 * 119.97411 * 77.46931 * 5 4 2 26 26 Cl 1.73597 * 119.93416 * 359.97438 * 25 5 4 27 27 H 1.09001 * 109.47716 * 54.46226 * 1 2 3 28 28 H 1.09007 * 109.46865 * 174.45878 * 1 2 3 29 29 H 1.08994 * 109.47420 * 294.45879 * 1 2 3 30 30 H 1.08995 * 109.46836 * 63.95255 * 3 2 1 31 31 H 1.08991 * 109.46797 * 183.95028 * 3 2 1 32 32 H 1.09002 * 109.46754 * 303.95848 * 3 2 1 33 33 H 1.09006 * 109.46854 * 195.63691 * 4 2 1 34 34 H 1.08999 * 109.47041 * 315.63325 * 4 2 1 35 35 H 1.07997 * 120.03118 * 0.02562 * 6 5 4 36 36 H 0.96999 * 119.99839 * 33.93599 * 8 7 6 37 37 H 0.97001 * 120.00584 * 0.02562 * 13 11 9 38 38 H 1.08998 * 109.46845 * 299.99791 * 14 13 11 39 39 H 1.08994 * 109.47379 * 60.00063 * 14 13 11 40 40 H 0.97000 * 119.99844 * 179.97438 * 18 17 15 41 41 H 1.08004 * 120.03031 * 179.72095 * 23 7 6 42 42 H 1.08003 * 119.96833 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.8465 -2.2401 0.8625 6 6 0.8331 -2.9561 1.4693 7 6 0.6935 -4.3139 1.2115 8 7 -0.3341 -5.0399 1.8200 9 6 -0.1372 -6.3283 2.1633 10 8 0.9566 -6.8343 2.0192 11 6 -1.2647 -7.1331 2.7213 12 8 -2.3584 -6.6272 2.8651 13 7 -1.0676 -8.4213 3.0651 14 6 -2.1739 -9.2109 3.6119 15 6 -1.6940 -10.6079 3.9111 16 1 -0.6676 -10.8801 3.7141 17 6 -2.5651 -11.5381 4.4374 18 7 -3.8148 -11.2065 4.6778 19 14 -1.9701 -13.2693 4.8090 20 1 -0.5335 -13.3864 4.4517 21 1 -2.1445 -13.5527 6.2562 22 1 -2.7593 -14.2450 4.0149 23 6 1.5807 -4.9500 0.3520 24 6 2.5950 -4.2303 -0.2476 25 6 2.7285 -2.8763 0.0070 26 17 4.0050 -1.9745 -0.7487 27 1 -0.3634 0.5973 -0.8362 28 1 -0.3633 -1.0229 -0.0992 29 1 -0.3634 0.4255 0.9354 30 1 1.7043 1.8724 0.9233 31 1 3.0826 1.3433 -0.0708 32 1 1.5896 1.9164 -0.8524 33 1 3.0496 -0.5275 1.2794 34 1 1.4398 -0.5064 2.0386 35 1 0.1475 -2.4600 2.1401 36 1 -1.1892 -4.6166 1.9950 37 1 -0.1934 -8.8256 2.9505 38 1 -2.5336 -8.7456 4.5296 39 1 -2.9843 -9.2537 2.8843 40 1 -4.4277 -11.8610 5.0477 41 1 1.4772 -6.0065 0.1533 42 1 3.2851 -4.7243 -0.9155 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000440038695.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:18 Heat of formation + Delta-G solvation = -43.155270 kcal Electronic energy + Delta-G solvation = -25866.685330 eV Core-core repulsion = 21872.780261 eV Total energy + Delta-G solvation = -3993.905068 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.98565 -39.59054 -38.20892 -37.29134 -36.58988 -35.13616 -34.21643 -32.42549 -32.06832 -29.95431 -27.92552 -27.78859 -27.09476 -24.97910 -23.18151 -22.87465 -22.20481 -20.93182 -19.88586 -18.79440 -17.41581 -16.90479 -16.55241 -16.18352 -15.83414 -15.71082 -15.55909 -15.12293 -15.09412 -14.81216 -14.33270 -14.16726 -13.82667 -13.50128 -13.23286 -13.09356 -12.80374 -12.68481 -12.31331 -12.11441 -12.10153 -11.98654 -11.91294 -11.82041 -11.61692 -11.36316 -11.03116 -10.97665 -10.87075 -10.37758 -10.27243 -9.50983 -9.29435 -9.14397 -8.88372 -8.71268 -8.27176 -8.16510 -6.26122 -4.33596 0.77866 0.99297 1.74148 2.03591 2.53476 3.20170 3.24258 3.27890 3.31706 3.58197 3.76950 3.95582 4.28337 4.34829 4.45749 4.76863 4.82340 4.93784 4.97596 5.03523 5.09059 5.10893 5.11937 5.23973 5.29762 5.33598 5.51735 5.60064 5.61147 5.74279 5.97089 6.06409 6.12346 6.56088 6.62418 6.64890 6.90361 7.01980 7.12599 7.30821 7.50035 7.74908 7.82205 8.30594 8.49471 8.77604 9.32990 10.83935 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.026145 B = 0.001984 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.683896 B =14112.367425 C =14984.302537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.536 5.536 3 C 0.026 3.974 4 C 0.093 3.907 5 C -0.053 4.053 6 C -0.128 4.128 7 C 0.157 3.843 8 N -0.652 5.652 9 C 0.510 3.490 10 O -0.501 6.501 11 C 0.491 3.509 12 O -0.535 6.535 13 N -0.669 5.669 14 C 0.246 3.754 15 C -0.547 4.547 16 H 0.067 0.933 17 C 0.065 3.935 18 N -0.885 5.885 19 Si 0.907 3.093 20 H -0.270 1.270 21 H -0.281 1.281 22 H -0.281 1.281 23 C -0.108 4.108 24 C -0.091 4.091 25 C -0.028 4.028 26 Cl -0.066 7.066 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.026 0.974 30 H 0.025 0.975 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.049 0.951 35 H 0.134 0.866 36 H 0.424 0.576 37 H 0.405 0.595 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.267 0.733 41 H 0.145 0.855 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.203 23.314 -9.758 28.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.260 5.260 3 C -0.122 4.122 4 C -0.035 4.035 5 C -0.055 4.055 6 C -0.149 4.149 7 C 0.062 3.938 8 N -0.299 5.299 9 C 0.293 3.707 10 O -0.374 6.374 11 C 0.270 3.730 12 O -0.414 6.414 13 N -0.318 5.318 14 C 0.126 3.874 15 C -0.585 4.585 16 H 0.085 0.915 17 C -0.139 4.139 18 N -0.522 5.522 19 Si 0.734 3.266 20 H -0.195 1.195 21 H -0.207 1.207 22 H -0.207 1.207 23 C -0.129 4.129 24 C -0.110 4.110 25 C -0.056 4.056 26 Cl -0.037 7.037 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.045 0.955 30 H 0.043 0.957 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.068 0.932 35 H 0.151 0.849 36 H 0.262 0.738 37 H 0.240 0.760 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.163 0.837 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 12.234 22.989 -10.137 27.945 hybrid contribution -0.042 -0.490 0.967 1.085 sum 12.191 22.498 -9.170 27.182 Atomic orbital electron populations 1.22453 0.87035 1.02728 1.00405 1.61892 1.08106 1.13588 1.42376 1.22383 1.00867 0.88432 1.00483 1.21046 1.01427 0.89082 0.91897 1.19276 0.94306 0.95391 0.96506 1.20735 0.99411 0.92752 1.02020 1.17749 0.91072 0.91001 0.94002 1.43261 1.16223 1.11626 1.58765 1.20953 0.89462 0.82240 0.78088 1.90752 1.25196 1.70299 1.51196 1.19631 0.87656 0.84175 0.81579 1.90742 1.25001 1.70921 1.54745 1.46437 1.16919 1.09401 1.59045 1.19372 0.84057 0.89381 0.94588 1.21236 0.97592 0.95061 1.44619 0.91457 1.24944 0.94676 0.99412 0.94882 1.69970 1.04030 1.35301 1.42878 0.86304 0.78998 0.83222 0.78099 1.19480 1.20722 1.20706 1.21179 0.94973 1.01413 0.95309 1.20931 0.98422 0.91751 0.99910 1.20661 0.93563 0.92149 0.99255 1.98349 1.49511 1.75160 1.80653 0.91312 0.91081 0.95529 0.95684 0.91263 0.91221 0.89313 0.93236 0.84856 0.73750 0.76027 0.94653 0.94637 0.92343 0.83700 0.84481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.41 60.07 0.56 0.72 16 2 N -0.54 -4.18 4.94 -252.72 -1.25 -5.43 16 3 C 0.03 0.16 9.51 60.07 0.57 0.73 16 4 C 0.09 0.74 4.49 -4.98 -0.02 0.71 16 5 C -0.05 -0.51 4.86 -104.62 -0.51 -1.01 16 6 C -0.13 -1.25 9.11 -39.38 -0.36 -1.61 16 7 C 0.16 1.85 6.27 -83.73 -0.53 1.32 16 8 N -0.65 -8.31 5.32 -10.29 -0.05 -8.37 16 9 C 0.51 8.12 7.63 -11.63 -0.09 8.03 16 10 O -0.50 -8.57 14.15 5.47 0.08 -8.49 16 11 C 0.49 9.40 7.89 -11.64 -0.09 9.31 16 12 O -0.54 -11.35 16.48 5.49 0.09 -11.26 16 13 N -0.67 -13.94 5.54 -61.94 -0.34 -14.28 16 14 C 0.25 6.22 5.43 -5.19 -0.03 6.19 16 15 C -0.55 -14.47 9.28 -34.44 -0.32 -14.79 16 16 H 0.07 1.69 7.60 -52.49 -0.40 1.29 16 17 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 18 N -0.88 -25.19 13.29 55.43 0.74 -24.46 16 19 Si 0.91 20.49 29.54 -169.99 -5.02 15.47 16 20 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 C -0.11 -1.31 8.65 -39.38 -0.34 -1.65 16 24 C -0.09 -0.96 9.82 -39.58 -0.39 -1.35 16 25 C -0.03 -0.29 6.32 -39.47 -0.25 -0.54 16 26 Cl -0.07 -0.62 27.56 -51.86 -1.43 -2.05 16 27 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 28 H 0.07 0.55 7.26 -51.93 -0.38 0.17 16 29 H 0.03 0.17 8.06 -51.93 -0.42 -0.25 16 30 H 0.02 0.14 8.14 -51.93 -0.42 -0.29 16 31 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 32 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 33 H 0.09 0.69 7.21 -51.93 -0.37 0.31 16 34 H 0.05 0.35 7.77 -51.93 -0.40 -0.05 16 35 H 0.13 1.05 8.01 -52.49 -0.42 0.63 16 36 H 0.42 4.74 8.29 -40.82 -0.34 4.40 16 37 H 0.40 7.80 7.79 -40.82 -0.32 7.48 16 38 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.15 1.90 6.41 -52.48 -0.34 1.56 16 42 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 LS Contribution 375.73 15.07 5.66 5.66 Total: -1.00 -30.07 375.73 -8.88 -38.96 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -5.47 Total: 6.53 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: -1.88 Total: 7.72 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: -0.91 Total: -52.53 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: 0.17 Total: -19.75 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.43 Total: -2.05 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.07 -8.88 -38.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440038695.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.199 kcal (2) G-P(sol) polarization free energy of solvation -30.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds