Wall clock time and date at job start Tue Mar 31 2020 23:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34782 * 120.00217 * 2 1 4 4 O 1.21279 * 119.99869 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99839 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.46803 * 179.97438 * 5 3 2 7 7 H 1.09001 * 109.47072 * 54.99999 * 6 5 3 8 8 C 1.53001 * 109.47132 * 174.99791 * 6 5 3 9 9 N 1.46494 * 109.47349 * 295.00205 * 6 5 3 10 10 C 1.34778 * 120.00172 * 155.00229 * 9 6 5 11 11 O 1.21584 * 120.00102 * 359.72233 * 10 9 6 12 12 N 1.34782 * 119.99911 * 179.97438 * 10 9 6 13 13 C 1.39276 * 119.99866 * 175.75404 * 12 10 9 14 14 C 1.39467 * 119.83741 * 34.71580 * 13 12 10 15 15 C 1.36377 * 120.17817 * 179.75821 * 14 13 12 16 16 C 1.40887 * 119.84501 * 0.53595 * 15 14 13 17 17 C 1.41153 * 120.15480 * 179.74073 * 16 15 14 18 18 H 1.08006 * 120.00183 * 34.75631 * 17 16 15 19 19 C 1.39888 * 120.00260 * 214.74628 * 17 16 15 20 20 N 1.30885 * 119.99661 * 355.60509 * 19 17 16 21 21 Si 1.86803 * 120.00218 * 175.59570 * 19 17 16 22 22 H 1.48503 * 109.46975 * 90.00774 * 21 19 17 23 23 H 1.48504 * 109.46805 * 210.00346 * 21 19 17 24 24 H 1.48495 * 109.47306 * 330.00315 * 21 19 17 25 25 C 1.40839 * 119.68678 * 359.71437 * 16 15 14 26 26 C 1.36472 * 119.81804 * 0.02562 * 25 16 15 27 27 Cl 1.73605 * 119.92699 * 179.97438 * 26 25 16 28 28 H 1.09000 * 109.47317 * 60.00304 * 1 2 3 29 29 H 1.08998 * 109.47393 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.47382 * 300.00433 * 1 2 3 31 31 H 0.97004 * 120.00247 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.47528 * 60.00245 * 5 3 2 33 33 H 1.09000 * 109.47582 * 299.99646 * 5 3 2 34 34 H 1.08993 * 109.47320 * 300.00417 * 8 6 5 35 35 H 1.09001 * 109.46972 * 60.00147 * 8 6 5 36 36 H 1.08998 * 109.47336 * 179.97438 * 8 6 5 37 37 H 0.97000 * 120.00213 * 334.99556 * 9 6 5 38 38 H 0.96999 * 120.00062 * 355.75382 * 12 10 9 39 39 H 1.08001 * 119.91026 * 359.97438 * 14 13 12 40 40 H 1.07994 * 120.07534 * 180.25522 * 15 14 13 41 41 H 0.97004 * 119.99821 * 179.97438 * 20 19 17 42 42 H 1.08002 * 120.08758 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6458 1.1671 0.0006 6 6 4.1559 2.6096 -0.0002 7 1 3.7209 3.1492 0.8411 8 6 5.6806 2.6115 0.1262 9 7 3.7688 3.2638 -1.2525 10 6 3.6420 4.6047 -1.3012 11 8 3.8440 5.2711 -0.3045 12 7 3.2864 5.2066 -2.4535 13 6 3.0693 6.5820 -2.4826 14 6 3.8388 7.4232 -1.6793 15 6 3.6354 8.7714 -1.7059 16 6 2.6372 9.3135 -2.5393 17 6 2.4174 10.7076 -2.5679 18 1 3.2489 11.3878 -2.4568 19 6 1.1226 11.2081 -2.7405 20 7 0.1276 10.3870 -2.9613 21 14 0.8136 13.0485 -2.6554 22 1 0.9543 13.6372 -4.0115 23 1 -0.5598 13.2968 -2.1481 24 1 1.8005 13.6743 -1.7392 25 6 1.8601 8.4580 -3.3442 26 6 2.0785 7.1113 -3.3110 27 17 1.1217 6.0541 -4.3014 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.9500 -0.8401 0.0004 32 1 4.0096 0.6531 -0.8892 33 1 4.0089 0.6535 0.8908 34 1 5.9686 2.1248 1.0579 35 1 6.1156 2.0719 -0.7151 36 1 6.0440 3.6391 0.1252 37 1 3.6038 2.7319 -2.0467 38 1 3.1817 4.6818 -3.2626 39 1 4.6003 7.0060 -1.0369 40 1 4.2351 9.4216 -1.0862 41 1 -0.7703 10.7341 -3.0806 42 1 1.0934 8.8667 -3.9857 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455735335.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:57 Heat of formation + Delta-G solvation = -54.558425 kcal Electronic energy + Delta-G solvation = -26735.918975 eV Core-core repulsion = 22741.519429 eV Total energy + Delta-G solvation = -3994.399546 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.26463 -39.48478 -37.66785 -35.81209 -35.39833 -34.71318 -34.18571 -32.97665 -31.35000 -29.33244 -29.02772 -28.53513 -26.22177 -24.98996 -22.37871 -21.42695 -20.86775 -20.40974 -20.10097 -18.07652 -17.50386 -17.29771 -16.75700 -15.93946 -15.89049 -15.30378 -15.05399 -14.70190 -14.26791 -14.12229 -13.87471 -13.45742 -13.36698 -13.11189 -12.82956 -12.58669 -12.53327 -12.31426 -12.21991 -12.14937 -11.91459 -11.55183 -11.33157 -11.10567 -11.05958 -10.85324 -10.47003 -10.22872 -10.00389 -9.92122 -9.66319 -9.43366 -9.36779 -9.17806 -8.87717 -8.75406 -7.42923 -6.86011 -6.61359 -4.35797 2.49343 2.57650 2.95350 2.95874 3.09079 3.11570 3.14363 3.18714 3.32923 3.85674 3.99359 4.44229 4.52041 4.66918 4.71118 4.92003 4.97425 5.17430 5.26525 5.34320 5.40341 5.55191 5.57124 5.62498 5.99560 6.13269 6.18877 6.32007 6.61686 6.73884 6.83567 6.97364 7.11860 7.19848 7.22289 7.37775 7.46793 7.81206 7.82995 8.04081 8.06612 8.21972 8.53973 8.55369 8.86712 8.90264 9.21182 10.29165 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.016296 B = 0.002799 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.782801 B =10001.692442 C =10690.995765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.742 5.742 3 C 0.501 3.499 4 O -0.511 6.511 5 C -0.149 4.149 6 C 0.177 3.823 7 H 0.096 0.904 8 C -0.164 4.164 9 N -0.737 5.737 10 C 0.707 3.293 11 O -0.578 6.578 12 N -0.667 5.667 13 C 0.040 3.960 14 C -0.077 4.077 15 C -0.199 4.199 16 C 0.105 3.895 17 C -0.458 4.458 18 H 0.079 0.921 19 C 0.069 3.931 20 N -0.807 5.807 21 Si 0.917 3.083 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.263 1.263 25 C -0.135 4.135 26 C -0.025 4.025 27 Cl -0.122 7.122 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.399 0.601 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.388 0.612 38 H 0.392 0.608 39 H 0.120 0.880 40 H 0.102 0.898 41 H 0.280 0.720 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.872 -21.659 2.112 22.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.396 5.396 3 C 0.286 3.714 4 O -0.384 6.384 5 C -0.190 4.190 6 C 0.071 3.929 7 H 0.114 0.886 8 C -0.222 4.222 9 N -0.393 5.393 10 C 0.407 3.593 11 O -0.455 6.455 12 N -0.314 5.314 13 C -0.055 4.055 14 C -0.097 4.097 15 C -0.220 4.220 16 C 0.102 3.898 17 C -0.488 4.488 18 H 0.097 0.903 19 C -0.147 4.147 20 N -0.433 5.433 21 Si 0.742 3.258 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.187 1.187 25 C -0.156 4.156 26 C -0.054 4.054 27 Cl -0.094 7.094 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.232 0.768 32 H 0.115 0.885 33 H 0.125 0.875 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.220 0.780 38 H 0.226 0.774 39 H 0.137 0.863 40 H 0.120 0.880 41 H 0.091 0.909 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.239 -20.356 2.937 20.999 hybrid contribution -0.485 -0.472 -0.774 1.028 sum 3.754 -20.828 2.164 21.274 Atomic orbital electron populations 1.21512 0.79713 1.01908 1.02563 1.45849 1.07753 1.08660 1.77313 1.20767 0.90334 0.83755 0.76525 1.90862 1.70052 1.30807 1.46691 1.22062 0.92339 0.99433 1.05151 1.20418 0.94089 0.90022 0.88367 0.88610 1.22225 0.95196 1.03352 1.01459 1.44940 1.75982 1.05482 1.12859 1.15825 0.78267 0.81510 0.83652 1.90876 1.57113 1.63134 1.34359 1.42014 1.72237 1.07303 1.09798 1.16719 1.01124 0.80764 1.06862 1.20415 0.98328 0.92782 0.98208 1.20896 1.04505 0.93645 1.02916 1.17584 0.90096 0.93605 0.88547 1.19457 0.93646 0.91788 1.43925 0.90253 1.25908 0.95945 1.00326 0.92526 1.69753 1.01108 1.36298 1.36171 0.86165 0.78359 0.82003 0.79281 1.19499 1.20282 1.18679 1.21174 1.03507 0.88995 1.01875 1.20418 0.94662 0.91407 0.98881 1.98243 1.72587 1.67917 1.70609 0.92189 0.90896 0.92261 0.76795 0.88474 0.87455 0.91833 0.92636 0.91261 0.77976 0.77379 0.86253 0.87981 0.90922 0.83908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.65 10.70 59.84 0.64 1.29 16 2 N -0.74 -5.36 5.71 -67.08 -0.38 -5.74 16 3 C 0.50 5.34 7.69 -10.98 -0.08 5.25 16 4 O -0.51 -8.52 15.35 5.56 0.09 -8.43 16 5 C -0.15 -1.09 5.24 -27.88 -0.15 -1.24 16 6 C 0.18 2.06 2.14 -67.93 -0.15 1.92 16 7 H 0.10 1.47 7.38 -51.93 -0.38 1.09 16 8 C -0.16 -1.58 9.48 37.16 0.35 -1.23 16 9 N -0.74 -10.25 4.22 -58.68 -0.25 -10.50 16 10 C 0.71 13.61 8.36 -86.91 -0.73 12.88 16 11 O -0.58 -13.38 13.39 5.29 0.07 -13.31 16 12 N -0.67 -13.02 5.02 -14.07 -0.07 -13.09 16 13 C 0.04 0.93 6.32 -83.52 -0.53 0.40 16 14 C -0.08 -1.88 8.61 -39.79 -0.34 -2.22 16 15 C -0.20 -5.05 9.74 -39.25 -0.38 -5.44 16 16 C 0.10 2.82 5.55 -106.81 -0.59 2.23 16 17 C -0.46 -12.17 9.02 -37.86 -0.34 -12.52 16 18 H 0.08 2.01 7.85 -52.48 -0.41 1.60 16 19 C 0.07 1.75 5.42 -17.34 -0.09 1.66 16 20 N -0.81 -21.33 10.60 55.54 0.59 -20.74 16 21 Si 0.92 19.16 29.56 -169.99 -5.03 14.13 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 23 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 24 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 25 C -0.13 -3.56 8.38 -39.24 -0.33 -3.89 16 26 C -0.03 -0.61 6.30 -39.72 -0.25 -0.86 16 27 Cl -0.12 -2.51 27.92 -51.86 -1.45 -3.96 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 31 H 0.40 1.40 8.83 -40.82 -0.36 1.04 16 32 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.39 4.35 8.62 -40.82 -0.35 4.00 16 38 H 0.39 6.54 8.07 -40.82 -0.33 6.21 16 39 H 0.12 2.87 6.18 -52.49 -0.32 2.54 16 40 H 0.10 2.42 8.06 -52.49 -0.42 2.00 16 41 H 0.28 6.80 8.30 -40.82 -0.34 6.47 16 42 H 0.14 3.92 6.13 -52.49 -0.32 3.60 16 LS Contribution 370.61 15.07 5.59 5.59 Total: -1.00 -34.75 370.61 -9.24 -43.99 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -5.42 Total: 13.81 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -2.97 Total: -1.75 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: -0.11 Total: -50.07 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: 0.16 Total: -21.74 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Atomic # 17 Polarization: -2.51 SS G_CDS: -1.45 Total: -3.96 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.75 -9.24 -43.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455735335.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.573 kcal (2) G-P(sol) polarization free energy of solvation -34.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds