Wall clock time and date at job start Tue Mar 31 2020 23:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34782 * 120.00217 * 2 1 4 4 O 1.21279 * 119.99869 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99839 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.46803 * 179.97438 * 5 3 2 7 7 H 1.09001 * 109.47072 * 54.99999 * 6 5 3 8 8 C 1.53001 * 109.47132 * 174.99791 * 6 5 3 9 9 N 1.46494 * 109.47349 * 295.00205 * 6 5 3 10 10 C 1.34778 * 120.00172 * 155.00229 * 9 6 5 11 11 O 1.21584 * 120.00102 * 359.72233 * 10 9 6 12 12 N 1.34782 * 119.99911 * 179.97438 * 10 9 6 13 13 C 1.39276 * 119.99866 * 175.75404 * 12 10 9 14 14 C 1.39467 * 119.83741 * 34.71580 * 13 12 10 15 15 C 1.36377 * 120.17817 * 179.75821 * 14 13 12 16 16 C 1.40887 * 119.84501 * 0.53595 * 15 14 13 17 17 C 1.41153 * 120.15480 * 179.74073 * 16 15 14 18 18 H 1.08006 * 120.00183 * 34.75631 * 17 16 15 19 19 C 1.39888 * 120.00260 * 214.74628 * 17 16 15 20 20 N 1.30885 * 119.99661 * 355.60509 * 19 17 16 21 21 Si 1.86803 * 120.00218 * 175.59570 * 19 17 16 22 22 H 1.48503 * 109.46975 * 90.00774 * 21 19 17 23 23 H 1.48504 * 109.46805 * 210.00346 * 21 19 17 24 24 H 1.48495 * 109.47306 * 330.00315 * 21 19 17 25 25 C 1.40839 * 119.68678 * 359.71437 * 16 15 14 26 26 C 1.36472 * 119.81804 * 0.02562 * 25 16 15 27 27 Cl 1.73605 * 119.92699 * 179.97438 * 26 25 16 28 28 H 1.09000 * 109.47317 * 60.00304 * 1 2 3 29 29 H 1.08998 * 109.47393 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.47382 * 300.00433 * 1 2 3 31 31 H 0.97004 * 120.00247 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.47528 * 60.00245 * 5 3 2 33 33 H 1.09000 * 109.47582 * 299.99646 * 5 3 2 34 34 H 1.08993 * 109.47320 * 300.00417 * 8 6 5 35 35 H 1.09001 * 109.46972 * 60.00147 * 8 6 5 36 36 H 1.08998 * 109.47336 * 179.97438 * 8 6 5 37 37 H 0.97000 * 120.00213 * 334.99556 * 9 6 5 38 38 H 0.96999 * 120.00062 * 355.75382 * 12 10 9 39 39 H 1.08001 * 119.91026 * 359.97438 * 14 13 12 40 40 H 1.07994 * 120.07534 * 180.25522 * 15 14 13 41 41 H 0.97004 * 119.99821 * 179.97438 * 20 19 17 42 42 H 1.08002 * 120.08758 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6458 1.1671 0.0006 6 6 4.1559 2.6096 -0.0002 7 1 3.7209 3.1492 0.8411 8 6 5.6806 2.6115 0.1262 9 7 3.7688 3.2638 -1.2525 10 6 3.6420 4.6047 -1.3012 11 8 3.8440 5.2711 -0.3045 12 7 3.2864 5.2066 -2.4535 13 6 3.0693 6.5820 -2.4826 14 6 3.8388 7.4232 -1.6793 15 6 3.6354 8.7714 -1.7059 16 6 2.6372 9.3135 -2.5393 17 6 2.4174 10.7076 -2.5679 18 1 3.2489 11.3878 -2.4568 19 6 1.1226 11.2081 -2.7405 20 7 0.1276 10.3870 -2.9613 21 14 0.8136 13.0485 -2.6554 22 1 0.9543 13.6372 -4.0115 23 1 -0.5598 13.2968 -2.1481 24 1 1.8005 13.6743 -1.7392 25 6 1.8601 8.4580 -3.3442 26 6 2.0785 7.1113 -3.3110 27 17 1.1217 6.0541 -4.3014 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.9500 -0.8401 0.0004 32 1 4.0096 0.6531 -0.8892 33 1 4.0089 0.6535 0.8908 34 1 5.9686 2.1248 1.0579 35 1 6.1156 2.0719 -0.7151 36 1 6.0440 3.6391 0.1252 37 1 3.6038 2.7319 -2.0467 38 1 3.1817 4.6818 -3.2626 39 1 4.6003 7.0060 -1.0369 40 1 4.2351 9.4216 -1.0862 41 1 -0.7703 10.7341 -3.0806 42 1 1.0934 8.8667 -3.9857 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455735335.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:56 Heat of formation + Delta-G solvation = -79.986333 kcal Electronic energy + Delta-G solvation = -26737.021612 eV Core-core repulsion = 22741.519429 eV Total energy + Delta-G solvation = -3995.502183 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.56223 -40.64410 -39.40583 -37.22359 -37.02100 -35.93959 -35.52559 -34.79103 -32.57273 -31.28130 -30.54579 -29.61491 -26.99865 -26.73775 -23.91682 -23.05636 -22.31702 -21.66746 -21.30387 -19.63986 -19.18981 -18.42810 -18.09568 -17.25653 -16.91896 -16.73754 -16.42447 -16.04461 -15.87620 -15.49937 -15.16988 -14.91448 -14.71655 -14.36644 -14.17463 -14.02893 -13.90493 -13.48610 -13.36142 -13.16569 -13.10541 -12.85450 -12.80116 -12.76350 -12.65310 -12.28037 -11.97489 -11.91659 -11.73892 -11.57353 -11.23752 -10.98080 -10.90996 -10.69778 -10.11456 -9.99137 -9.38186 -8.75599 -8.52267 -6.36706 0.67153 0.98238 1.39496 1.41013 1.48200 1.56076 1.70282 1.79487 2.23539 2.29725 2.33213 2.76734 3.35219 3.55710 3.68881 3.89378 4.27819 4.36651 4.40906 4.52477 4.57995 4.67857 4.70166 4.73301 4.86200 4.94990 4.95616 5.00811 5.10207 5.24785 5.30840 5.38809 5.48657 5.49007 5.66317 5.68921 5.89761 6.02372 6.17635 6.25798 6.54258 6.62708 6.88978 6.91788 7.14260 7.37819 7.69534 8.39967 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.016296 B = 0.002799 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.782801 B =10001.692442 C =10690.995765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.723 5.723 3 C 0.494 3.506 4 O -0.583 6.583 5 C -0.134 4.134 6 C 0.169 3.831 7 H 0.050 0.950 8 C -0.155 4.155 9 N -0.716 5.716 10 C 0.701 3.299 11 O -0.621 6.621 12 N -0.663 5.663 13 C 0.049 3.951 14 C -0.084 4.084 15 C -0.209 4.209 16 C 0.076 3.924 17 C -0.489 4.489 18 H 0.082 0.918 19 C 0.026 3.974 20 N -0.839 5.839 21 Si 0.992 3.008 22 H -0.259 1.259 23 H -0.272 1.272 24 H -0.259 1.259 25 C -0.151 4.151 26 C -0.034 4.034 27 Cl -0.090 7.090 28 H 0.039 0.961 29 H 0.112 0.888 30 H 0.039 0.961 31 H 0.422 0.578 32 H 0.138 0.862 33 H 0.147 0.853 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.031 0.969 37 H 0.404 0.596 38 H 0.407 0.593 39 H 0.121 0.879 40 H 0.110 0.890 41 H 0.286 0.714 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.603 -24.483 1.872 25.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.377 5.377 3 C 0.281 3.719 4 O -0.462 6.462 5 C -0.174 4.174 6 C 0.064 3.936 7 H 0.069 0.931 8 C -0.213 4.213 9 N -0.371 5.371 10 C 0.402 3.598 11 O -0.502 6.502 12 N -0.310 5.310 13 C -0.047 4.047 14 C -0.104 4.104 15 C -0.229 4.229 16 C 0.073 3.927 17 C -0.519 4.519 18 H 0.100 0.900 19 C -0.186 4.186 20 N -0.466 5.466 21 Si 0.812 3.188 22 H -0.183 1.183 23 H -0.197 1.197 24 H -0.183 1.183 25 C -0.172 4.172 26 C -0.063 4.063 27 Cl -0.062 7.062 28 H 0.058 0.942 29 H 0.131 0.869 30 H 0.058 0.942 31 H 0.259 0.741 32 H 0.156 0.844 33 H 0.165 0.835 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.050 0.950 37 H 0.240 0.760 38 H 0.244 0.756 39 H 0.139 0.861 40 H 0.128 0.872 41 H 0.096 0.904 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.999 -23.334 2.672 24.013 hybrid contribution -0.721 0.145 -0.679 1.001 sum 4.278 -23.190 1.993 23.665 Atomic orbital electron populations 1.21566 0.79935 1.03882 1.00662 1.45723 1.07764 1.08873 1.75303 1.21425 0.91798 0.83449 0.75226 1.90848 1.71618 1.33422 1.50335 1.22065 0.89644 0.96699 1.08957 1.20628 0.95471 0.91938 0.85564 0.93126 1.22141 0.93227 1.01773 1.04148 1.44853 1.74234 1.03512 1.14550 1.16071 0.77927 0.83093 0.82751 1.90844 1.58946 1.64631 1.35741 1.41888 1.72309 1.05993 1.10859 1.16784 0.99945 0.82544 1.05404 1.20514 0.98729 0.92670 0.98526 1.21051 1.04493 0.94316 1.03008 1.17903 0.90997 0.94413 0.89386 1.19722 0.94643 0.91961 1.45558 0.89965 1.26816 0.95154 1.05180 0.91475 1.69836 1.01657 1.38426 1.36710 0.85052 0.78253 0.75784 0.79685 1.18350 1.19686 1.18286 1.21083 1.03749 0.90038 1.02340 1.20454 0.94992 0.91421 0.99388 1.98236 1.71738 1.66610 1.69598 0.94200 0.86907 0.94193 0.74119 0.84365 0.83547 0.89054 0.89941 0.94976 0.76040 0.75644 0.86107 0.87209 0.90365 0.85391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.14 10.70 127.77 1.37 2.50 16 2 N -0.72 -8.43 5.71 -484.53 -2.77 -11.20 16 3 C 0.49 9.59 7.69 87.66 0.67 10.27 16 4 O -0.58 -19.69 15.35 -3.03 -0.05 -19.74 16 5 C -0.13 -1.45 5.24 29.85 0.16 -1.29 16 6 C 0.17 3.69 2.14 44.99 0.10 3.79 16 7 H 0.05 1.60 7.38 -2.39 -0.02 1.58 16 8 C -0.15 -2.62 9.48 71.98 0.68 -1.94 16 9 N -0.72 -19.19 4.22 -457.82 -1.93 -21.12 16 10 C 0.70 27.25 8.36 179.05 1.50 28.75 16 11 O -0.62 -29.78 13.39 -3.98 -0.05 -29.83 16 12 N -0.66 -25.88 5.02 -316.68 -1.59 -27.47 16 13 C 0.05 2.33 6.32 38.58 0.24 2.57 16 14 C -0.08 -4.22 8.61 22.13 0.19 -4.03 16 15 C -0.21 -10.99 9.74 22.48 0.22 -10.77 16 16 C 0.08 4.26 5.55 -21.28 -0.12 4.14 16 17 C -0.49 -26.83 9.02 23.39 0.21 -26.62 16 18 H 0.08 4.29 7.85 -2.91 -0.02 4.27 16 19 C 0.03 1.36 5.42 85.23 0.46 1.82 16 20 N -0.84 -45.50 10.60 21.82 0.23 -45.27 16 21 Si 0.99 39.60 29.56 68.60 2.03 41.63 16 22 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 23 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 24 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 25 C -0.15 -8.27 8.38 22.49 0.19 -8.08 16 26 C -0.03 -1.66 6.30 22.18 0.14 -1.52 16 27 Cl -0.09 -3.70 27.92 -2.72 -0.08 -3.77 16 28 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.42 1.12 8.83 -92.71 -0.82 0.30 16 32 H 0.14 0.46 8.14 -2.38 -0.02 0.44 16 33 H 0.15 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.40 8.15 8.62 -92.71 -0.80 7.35 16 38 H 0.41 13.21 8.07 -92.71 -0.75 12.46 16 39 H 0.12 6.02 6.18 -2.91 -0.02 6.00 16 40 H 0.11 5.42 8.06 -2.91 -0.02 5.40 16 41 H 0.29 14.16 8.30 -92.71 -0.77 13.39 16 42 H 0.13 7.32 6.13 -2.91 -0.02 7.30 16 Total: -1.00 -82.31 370.61 0.53 -81.77 By element: Atomic # 1 Polarization: 36.67 SS G_CDS: -1.27 Total: 35.41 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 6.01 Total: -0.41 kcal Atomic # 7 Polarization: -99.00 SS G_CDS: -6.06 Total: -105.06 kcal Atomic # 8 Polarization: -49.47 SS G_CDS: -0.10 Total: -49.57 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal Atomic # 17 Polarization: -3.70 SS G_CDS: -0.08 Total: -3.77 kcal Total: -82.31 0.53 -81.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455735335.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.786 kcal (2) G-P(sol) polarization free energy of solvation -82.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds