Wall clock time and date at job start Tue Mar 31 2020 23:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46495 * 109.47268 * 2 1 4 4 C 1.46503 * 119.99929 * 270.00049 * 3 2 1 5 5 C 1.34778 * 120.00247 * 89.99745 * 3 2 1 6 6 O 1.21281 * 119.99942 * 0.02562 * 5 3 2 7 7 C 1.50702 * 120.00349 * 180.02562 * 5 3 2 8 8 N 1.46497 * 109.47336 * 180.02562 * 7 5 3 9 9 C 1.34778 * 119.99998 * 180.02562 * 8 7 5 10 10 O 1.21582 * 120.00122 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99826 * 180.27140 * 9 8 7 12 12 C 1.39282 * 119.99821 * 175.46702 * 11 9 8 13 13 C 1.39467 * 119.83300 * 34.74351 * 12 11 9 14 14 C 1.36381 * 120.17235 * 179.71441 * 13 12 11 15 15 C 1.40885 * 119.85079 * 0.55137 * 14 13 12 16 16 C 1.41151 * 120.15987 * 179.74118 * 15 14 13 17 17 H 1.08003 * 119.99631 * 34.75318 * 16 15 14 18 18 C 1.39891 * 120.00371 * 214.75435 * 16 15 14 19 19 N 1.30881 * 119.99830 * 355.59017 * 18 16 15 20 20 Si 1.86801 * 120.00243 * 175.59042 * 18 16 15 21 21 H 1.48500 * 109.47014 * 89.99936 * 20 18 16 22 22 H 1.48499 * 109.46820 * 209.99770 * 20 18 16 23 23 H 1.48498 * 109.47207 * 330.00038 * 20 18 16 24 24 C 1.40841 * 119.68353 * 359.72325 * 15 14 13 25 25 C 1.36479 * 119.81800 * 359.97438 * 24 15 14 26 26 Cl 1.73600 * 119.92406 * 179.97438 * 25 24 15 27 27 H 1.09004 * 109.47125 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47271 * 299.99740 * 1 2 3 29 29 H 1.08998 * 109.47115 * 60.00155 * 1 2 3 30 30 H 1.09002 * 109.47226 * 239.99746 * 2 1 3 31 31 H 1.09003 * 109.47558 * 120.00003 * 2 1 3 32 32 H 1.09000 * 109.47054 * 269.99532 * 4 3 2 33 33 H 1.09003 * 109.46922 * 29.99904 * 4 3 2 34 34 H 1.09004 * 109.47278 * 149.99674 * 4 3 2 35 35 H 1.09000 * 109.46873 * 59.99450 * 7 5 3 36 36 H 1.09003 * 109.47049 * 300.00487 * 7 5 3 37 37 H 0.96994 * 119.99871 * 359.97438 * 8 7 5 38 38 H 0.97001 * 120.00483 * 355.47609 * 11 9 8 39 39 H 1.07997 * 119.91426 * 359.97005 * 13 12 11 40 40 H 1.08005 * 120.07354 * 180.24317 * 14 13 12 41 41 H 0.96993 * 120.00399 * 180.02562 * 19 18 16 42 42 H 1.08000 * 120.09218 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 2.2429 2.0166 1.1672 6 8 2.0412 1.4447 2.2175 7 6 2.7448 3.4376 1.1672 8 7 2.9082 3.8978 2.5484 9 6 3.3491 5.1474 2.7946 10 8 3.6116 5.8925 1.8705 11 7 3.5046 5.5688 4.0653 12 6 4.0490 6.8252 4.3205 13 6 3.7806 7.8863 3.4561 14 6 4.3053 9.1208 3.7026 15 6 5.1299 9.3204 4.8273 16 6 5.6808 10.5941 5.0856 17 1 5.1174 11.4843 4.8481 18 6 6.9566 10.7032 5.6491 19 7 7.6039 9.6267 6.0165 20 14 7.7362 12.3854 5.8772 21 1 7.3717 12.9229 7.2127 22 1 9.2129 12.2639 5.7787 23 1 7.2437 13.3065 4.8216 24 6 5.4016 8.2432 5.6930 25 6 4.8646 7.0149 5.4371 26 17 5.1983 5.6850 6.5020 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.2919 1.9005 -1.5834 33 1 1.5816 1.6876 -2.0284 34 1 2.0955 3.1410 -1.1385 35 1 2.0265 4.0765 0.6535 36 1 3.7048 3.4839 0.6531 37 1 2.6984 3.3034 3.2856 38 1 3.2376 4.9972 4.8021 39 1 3.1522 7.7310 2.5916 40 1 4.0932 9.9423 3.0343 41 1 8.4883 9.7023 6.4076 42 1 6.0326 8.3890 6.5573 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455737011.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:34 Heat of formation + Delta-G solvation = -45.136419 kcal Electronic energy + Delta-G solvation = -26126.888720 eV Core-core repulsion = 22132.897742 eV Total energy + Delta-G solvation = -3993.990978 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.55459 -39.68349 -37.65399 -36.29991 -35.47056 -34.69611 -34.14166 -32.96914 -31.80123 -29.43630 -29.16808 -27.71569 -26.99123 -24.93415 -23.39833 -21.82249 -20.97340 -20.27330 -19.64621 -18.33938 -17.45201 -17.15330 -16.85043 -16.43230 -16.07909 -15.39490 -15.07264 -14.73553 -14.40580 -14.23377 -14.03488 -13.87944 -13.41733 -13.23031 -13.04822 -12.92978 -12.83158 -12.54505 -12.41091 -12.33472 -12.22676 -11.63324 -11.43906 -11.39219 -11.13360 -10.91836 -10.56346 -10.29978 -10.21144 -10.04131 -9.73606 -9.58530 -9.30237 -9.15598 -9.04585 -8.93642 -7.50915 -6.95973 -6.68421 -4.43075 2.22422 2.37000 2.50615 2.88234 3.05371 3.07595 3.09442 3.13432 3.25649 3.63502 3.93820 4.09903 4.59122 4.61105 4.65468 4.68183 4.77516 4.99651 5.03007 5.18083 5.23135 5.29172 5.32716 5.47998 5.51747 5.78729 6.05881 6.21412 6.41767 6.52667 6.68003 6.89041 6.90458 7.01411 7.12991 7.27615 7.38346 7.70825 7.72219 7.74789 7.95388 8.14155 8.38557 8.46832 8.78223 8.83084 8.99898 10.22031 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.024499 B = 0.002232 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.648679 B =12541.699382 C =13270.402182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.111 3.889 3 N -0.616 5.616 4 C 0.072 3.928 5 C 0.511 3.489 6 O -0.534 6.534 7 C 0.125 3.875 8 N -0.742 5.742 9 C 0.702 3.298 10 O -0.580 6.580 11 N -0.662 5.662 12 C 0.033 3.967 13 C -0.075 4.075 14 C -0.200 4.200 15 C 0.106 3.894 16 C -0.456 4.456 17 H 0.080 0.920 18 C 0.068 3.932 19 N -0.805 5.805 20 Si 0.918 3.082 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.262 1.262 24 C -0.135 4.135 25 C -0.023 4.023 26 Cl -0.120 7.120 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.405 0.595 38 H 0.396 0.604 39 H 0.120 0.880 40 H 0.103 0.897 41 H 0.281 0.719 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.423 -15.069 -10.453 20.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.012 4.012 3 N -0.351 5.351 4 C -0.071 4.071 5 C 0.298 3.702 6 O -0.411 6.411 7 C -0.003 4.003 8 N -0.402 5.402 9 C 0.403 3.597 10 O -0.457 6.457 11 N -0.309 5.309 12 C -0.062 4.062 13 C -0.096 4.096 14 C -0.220 4.220 15 C 0.103 3.897 16 C -0.486 4.486 17 H 0.098 0.902 18 C -0.148 4.148 19 N -0.432 5.432 20 Si 0.742 3.258 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.186 1.186 24 C -0.156 4.156 25 C -0.052 4.052 26 Cl -0.091 7.091 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.241 0.759 38 H 0.231 0.769 39 H 0.138 0.862 40 H 0.121 0.879 41 H 0.092 0.908 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.020 -14.910 -10.566 20.379 hybrid contribution 0.340 -0.106 0.681 0.769 sum -8.680 -15.015 -9.884 19.963 Atomic orbital electron populations 1.22133 0.95705 1.02351 1.02463 1.21457 0.94541 0.81823 1.03351 1.47824 1.66373 1.14594 1.06266 1.21930 1.01880 0.98210 0.85109 1.20694 0.77261 0.88619 0.83580 1.90694 1.51893 1.67600 1.30894 1.20831 1.02936 0.91322 0.85223 1.44748 1.73483 1.14338 1.07660 1.15812 0.78666 0.81296 0.83922 1.90897 1.57040 1.54544 1.43255 1.41989 1.65234 1.17963 1.05664 1.16707 1.05490 0.83945 1.00019 1.20416 0.99859 0.91148 0.98154 1.20897 1.06214 0.95952 0.98981 1.17603 0.89849 0.93230 0.89038 1.19478 1.00177 0.93179 1.35793 0.90164 1.25923 0.97451 0.98591 0.92789 1.69739 1.12924 1.29520 1.30989 0.86150 0.78329 0.81738 0.79534 1.19447 1.20244 1.18642 1.21191 1.02279 0.90070 1.02019 1.20417 1.01878 0.89222 0.93675 1.98252 1.94790 1.49498 1.66592 0.91482 0.92108 0.92526 0.90367 0.89699 0.91906 0.90653 0.90305 0.88600 0.88539 0.75858 0.76921 0.86220 0.87901 0.90830 0.83829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.06 10.24 37.16 0.38 -0.68 16 2 C 0.11 0.75 6.13 -4.05 -0.02 0.72 16 3 N -0.62 -4.87 2.87 -181.57 -0.52 -5.39 16 4 C 0.07 0.35 10.24 59.85 0.61 0.96 16 5 C 0.51 5.57 7.74 -10.98 -0.09 5.48 16 6 O -0.53 -7.44 15.25 5.56 0.08 -7.35 16 7 C 0.13 1.42 4.71 -5.19 -0.02 1.40 16 8 N -0.74 -10.50 5.53 -66.42 -0.37 -10.87 16 9 C 0.70 12.75 8.40 -86.92 -0.73 12.02 16 10 O -0.58 -12.32 13.73 5.29 0.07 -12.25 16 11 N -0.66 -12.35 5.02 -14.07 -0.07 -12.42 16 12 C 0.03 0.73 6.32 -83.52 -0.53 0.20 16 13 C -0.08 -1.76 8.61 -39.79 -0.34 -2.10 16 14 C -0.20 -4.86 9.74 -39.25 -0.38 -5.25 16 15 C 0.11 2.76 5.55 -106.81 -0.59 2.16 16 16 C -0.46 -11.75 9.02 -37.86 -0.34 -12.09 16 17 H 0.08 1.97 7.85 -52.48 -0.41 1.56 16 18 C 0.07 1.69 5.42 -17.34 -0.09 1.60 16 19 N -0.81 -20.61 10.59 55.54 0.59 -20.03 16 20 Si 0.92 18.59 29.56 -169.99 -5.03 13.57 16 21 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 22 H -0.28 -5.56 7.11 56.52 0.40 -5.15 16 23 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 24 C -0.14 -3.44 8.38 -39.23 -0.33 -3.77 16 25 C -0.02 -0.54 6.30 -39.72 -0.25 -0.79 16 26 Cl -0.12 -2.37 27.92 -51.86 -1.45 -3.82 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.35 8.07 -51.93 -0.42 -0.07 16 31 H 0.08 0.71 7.42 -51.93 -0.39 0.32 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.24 8.07 -51.93 -0.42 -0.18 16 34 H 0.08 0.37 6.44 -51.93 -0.33 0.04 16 35 H 0.10 0.99 7.40 -51.93 -0.38 0.61 16 36 H 0.10 1.06 8.11 -51.93 -0.42 0.64 16 37 H 0.40 5.39 7.45 -40.82 -0.30 5.08 16 38 H 0.40 6.43 8.07 -40.82 -0.33 6.10 16 39 H 0.12 2.73 6.18 -52.49 -0.32 2.40 16 40 H 0.10 2.33 8.06 -52.48 -0.42 1.91 16 41 H 0.28 6.60 8.30 -40.82 -0.34 6.27 16 42 H 0.14 3.82 6.13 -52.49 -0.32 3.50 16 LS Contribution 368.71 15.07 5.56 5.56 Total: -1.00 -31.01 368.71 -9.16 -40.17 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -5.30 Total: 12.94 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -2.73 Total: -0.12 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: -0.37 Total: -48.70 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: 0.16 Total: -19.60 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.57 kcal Atomic # 17 Polarization: -2.37 SS G_CDS: -1.45 Total: -3.82 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.01 -9.16 -40.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455737011.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.962 kcal (2) G-P(sol) polarization free energy of solvation -31.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds