Wall clock time and date at job start Tue Mar 31 2020 23:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21291 * 119.99808 * 2 1 4 4 N 1.34768 * 120.00216 * 180.02562 * 2 1 3 5 5 C 1.46501 * 119.99822 * 179.97438 * 4 2 1 6 6 C 1.53008 * 109.47074 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47374 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.47242 * 180.02562 * 7 6 5 9 9 C 1.34778 * 119.99998 * 180.02562 * 8 7 6 10 10 O 1.21582 * 120.00122 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99826 * 180.27140 * 9 8 7 12 12 C 1.39282 * 119.99821 * 175.46702 * 11 9 8 13 13 C 1.39467 * 119.83300 * 34.74351 * 12 11 9 14 14 C 1.36381 * 120.17235 * 179.71441 * 13 12 11 15 15 C 1.40885 * 119.85079 * 0.55137 * 14 13 12 16 16 C 1.41151 * 120.15987 * 179.74118 * 15 14 13 17 17 H 1.08003 * 119.99631 * 34.75318 * 16 15 14 18 18 C 1.39891 * 120.00371 * 214.75435 * 16 15 14 19 19 N 1.30881 * 119.99830 * 355.59017 * 18 16 15 20 20 Si 1.86801 * 120.00243 * 175.59042 * 18 16 15 21 21 H 1.48500 * 109.47014 * 89.99936 * 20 18 16 22 22 H 1.48499 * 109.46820 * 209.99770 * 20 18 16 23 23 H 1.48498 * 109.47207 * 330.00038 * 20 18 16 24 24 C 1.40841 * 119.68353 * 359.72325 * 15 14 13 25 25 C 1.36479 * 119.81800 * 359.97438 * 24 15 14 26 26 Cl 1.73600 * 119.92406 * 179.97438 * 25 24 15 27 27 H 1.08998 * 109.46834 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47156 * 299.99404 * 1 2 3 29 29 H 1.08996 * 109.47387 * 59.99420 * 1 2 3 30 30 H 0.96998 * 120.00156 * 0.02562 * 4 2 1 31 31 H 1.09001 * 109.46823 * 60.00755 * 5 4 2 32 32 H 1.08997 * 109.47664 * 299.99904 * 5 4 2 33 33 H 1.09007 * 109.46744 * 60.00306 * 6 5 4 34 34 H 1.08997 * 109.46891 * 300.00493 * 6 5 4 35 35 H 1.09000 * 109.46792 * 59.99739 * 7 6 5 36 36 H 1.09003 * 109.47224 * 300.00718 * 7 6 5 37 37 H 0.96994 * 119.99871 * 359.97438 * 8 7 6 38 38 H 0.97001 * 120.00483 * 355.47609 * 11 9 8 39 39 H 1.07997 * 119.91426 * 359.97005 * 13 12 11 40 40 H 1.08005 * 120.07354 * 180.24317 * 14 13 12 41 41 H 0.96993 * 120.00399 * 180.02562 * 19 18 16 42 42 H 1.08000 * 120.09218 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6459 -1.1670 -0.0011 6 6 4.1560 -2.6095 -0.0010 7 6 5.6860 -2.6095 -0.0009 8 7 6.1744 -3.9907 -0.0014 9 6 7.4995 -4.2369 -0.0009 10 8 8.2895 -3.3128 -0.0006 11 7 7.9487 -5.5076 -0.0069 12 6 9.3147 -5.7628 -0.1018 13 6 10.2258 -4.8982 0.5045 14 6 11.5645 -5.1447 0.4209 15 6 12.0274 -6.2696 -0.2899 16 6 13.4118 -6.5278 -0.3851 17 1 14.0637 -6.2901 0.4426 18 6 13.9396 -7.0917 -1.5515 19 7 13.1401 -7.4594 -2.5204 20 14 15.7854 -7.3198 -1.7264 21 1 16.1708 -8.6551 -1.2033 22 1 16.1627 -7.2216 -3.1593 23 1 16.4899 -6.2640 -0.9555 24 6 11.1022 -7.1354 -0.9046 25 6 9.7651 -6.8796 -0.8073 26 17 8.6223 -7.9446 -1.5646 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.6960 -2.0072 -0.0013 31 1 4.0095 -0.6534 0.8890 32 1 4.0090 -0.6530 -0.8910 33 1 3.7924 -3.1236 -0.8908 34 1 3.7930 -3.1232 0.8892 35 1 6.0492 -2.0956 0.8890 36 1 6.0494 -2.0956 -0.8909 37 1 5.5441 -4.7279 -0.0013 38 1 7.3208 -6.2444 0.0547 39 1 9.8701 -4.0336 1.0450 40 1 12.2685 -4.4762 0.8943 41 1 13.5060 -7.8506 -3.3290 42 1 11.4498 -7.9999 -1.4508 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455756003.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:03 Heat of formation + Delta-G solvation = -86.899854 kcal Electronic energy + Delta-G solvation = -25308.293369 eV Core-core repulsion = 21312.491394 eV Total energy + Delta-G solvation = -3995.801976 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.47098 -40.59220 -39.46532 -37.33115 -37.21023 -36.12898 -35.51240 -34.73400 -32.65394 -31.28378 -30.87548 -30.09556 -27.19054 -25.84676 -23.62173 -22.88350 -22.68162 -21.69645 -21.55435 -19.57686 -19.13963 -18.37473 -17.68044 -17.31335 -17.15064 -17.08451 -16.51282 -16.10363 -15.95787 -15.73310 -15.48401 -15.04687 -14.70319 -14.45749 -14.35750 -14.12925 -13.88962 -13.49116 -13.40893 -13.17740 -12.97523 -12.96661 -12.80735 -12.66425 -12.59849 -12.28902 -12.08019 -11.94771 -11.75015 -11.56804 -11.27795 -11.05822 -10.98020 -10.72851 -10.15343 -10.09242 -9.37475 -8.76904 -8.52699 -6.36834 0.66517 0.98454 1.40050 1.42150 1.47645 1.56080 1.64122 1.67732 2.17567 2.24674 2.32952 2.75669 3.31393 3.55889 3.85918 3.97764 3.99343 4.09070 4.37029 4.51160 4.53189 4.58376 4.68879 4.69053 4.78426 4.94533 5.01312 5.05249 5.10248 5.15524 5.22995 5.30952 5.42051 5.46191 5.50754 5.68441 5.88751 6.00827 6.16348 6.25887 6.54646 6.58659 6.88730 6.92136 7.09840 7.27965 7.60972 8.39372 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.025087 B = 0.001828 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.847128 B =15311.041741 C =15998.707524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.499 3.501 3 O -0.608 6.608 4 N -0.715 5.715 5 C 0.119 3.881 6 C -0.120 4.120 7 C 0.140 3.860 8 N -0.726 5.726 9 C 0.694 3.306 10 O -0.621 6.621 11 N -0.658 5.658 12 C 0.047 3.953 13 C -0.085 4.085 14 C -0.209 4.209 15 C 0.076 3.924 16 C -0.489 4.489 17 H 0.081 0.919 18 C 0.029 3.971 19 N -0.837 5.837 20 Si 0.989 3.011 21 H -0.260 1.260 22 H -0.272 1.272 23 H -0.261 1.261 24 C -0.151 4.151 25 C -0.031 4.031 26 Cl -0.086 7.086 27 H 0.109 0.891 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.421 0.579 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.414 0.586 38 H 0.412 0.588 39 H 0.121 0.879 40 H 0.108 0.892 41 H 0.286 0.714 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.809 2.361 3.448 24.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.288 3.712 3 O -0.490 6.490 4 N -0.369 5.369 5 C -0.006 4.006 6 C -0.158 4.158 7 C 0.015 3.985 8 N -0.383 5.383 9 C 0.395 3.605 10 O -0.501 6.501 11 N -0.306 5.306 12 C -0.049 4.049 13 C -0.105 4.105 14 C -0.230 4.230 15 C 0.073 3.927 16 C -0.520 4.520 17 H 0.099 0.901 18 C -0.184 4.184 19 N -0.464 5.464 20 Si 0.810 3.190 21 H -0.184 1.184 22 H -0.196 1.196 23 H -0.184 1.184 24 C -0.172 4.172 25 C -0.059 4.059 26 Cl -0.057 7.057 27 H 0.128 0.872 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.259 0.741 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.251 0.749 38 H 0.249 0.751 39 H 0.139 0.861 40 H 0.126 0.874 41 H 0.097 0.903 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -22.851 3.743 3.138 23.368 hybrid contribution 0.300 -1.005 -0.352 1.106 sum -22.552 2.737 2.786 22.888 Atomic orbital electron populations 1.21870 0.88000 1.06577 1.05773 1.21686 0.92454 0.82866 0.74176 1.90732 1.72289 1.33637 1.52354 1.46003 1.06923 1.09423 1.74532 1.21112 0.80516 0.97136 1.01814 1.21781 0.92444 0.95908 1.05654 1.21062 0.94344 0.81275 1.01785 1.44801 1.03799 1.09900 1.79824 1.16143 0.83532 0.82858 0.77999 1.90893 1.55936 1.44507 1.58793 1.41854 1.05639 1.06721 1.76430 1.16714 0.82955 0.98787 1.06427 1.20530 0.92491 0.98542 0.98934 1.21044 0.94876 0.98879 1.08154 1.17905 0.94122 0.89894 0.90740 1.19731 0.93088 1.37555 1.01585 0.90126 1.26755 1.05245 0.91906 0.94497 1.69808 1.38671 1.31634 1.06274 0.85087 0.75961 0.79686 0.78286 1.18446 1.19625 1.18445 1.21088 0.89394 1.01826 1.04901 1.20413 0.90470 0.94492 1.00569 1.98242 1.60884 1.65452 1.81166 0.87220 0.88232 0.88306 0.74138 0.92381 0.92625 0.88436 0.88105 0.92364 0.92905 0.74890 0.75134 0.86104 0.87429 0.90296 0.85374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.87 10.39 71.24 0.74 -0.13 16 2 C 0.50 7.55 7.94 87.66 0.70 8.24 16 3 O -0.61 -16.55 17.10 -3.06 -0.05 -16.61 16 4 N -0.72 -6.89 5.56 -463.04 -2.57 -9.47 16 5 C 0.12 1.58 5.67 86.38 0.49 2.07 16 6 C -0.12 -1.04 5.44 30.60 0.17 -0.87 16 7 C 0.14 2.56 5.67 86.38 0.49 3.05 16 8 N -0.73 -15.05 5.56 -478.55 -2.66 -17.71 16 9 C 0.69 23.02 8.40 179.06 1.50 24.53 16 10 O -0.62 -26.73 13.73 -3.97 -0.05 -26.78 16 11 N -0.66 -22.02 5.02 -316.70 -1.59 -23.61 16 12 C 0.05 2.02 6.32 38.58 0.24 2.26 16 13 C -0.08 -3.97 8.61 22.13 0.19 -3.78 16 14 C -0.21 -10.48 9.74 22.48 0.22 -10.26 16 15 C 0.08 4.08 5.55 -21.28 -0.12 3.96 16 16 C -0.49 -25.93 9.02 23.39 0.21 -25.72 16 17 H 0.08 4.09 7.85 -2.91 -0.02 4.06 16 18 C 0.03 1.44 5.42 85.23 0.46 1.90 16 19 N -0.84 -43.41 10.59 21.82 0.23 -43.18 16 20 Si 0.99 38.21 29.56 68.60 2.03 40.24 16 21 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 22 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 23 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 24 C -0.15 -7.78 8.38 22.50 0.19 -7.59 16 25 C -0.03 -1.38 6.30 22.18 0.14 -1.24 16 26 Cl -0.09 -3.11 27.92 -2.72 -0.08 -3.19 16 27 H 0.11 -0.17 7.91 -2.39 -0.02 -0.19 16 28 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.42 0.72 8.31 -92.71 -0.77 -0.05 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 34 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 36 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.41 5.27 8.49 -92.71 -0.79 4.48 16 38 H 0.41 10.81 8.07 -92.71 -0.75 10.06 16 39 H 0.12 5.63 6.18 -2.91 -0.02 5.61 16 40 H 0.11 5.10 8.06 -2.91 -0.02 5.07 16 41 H 0.29 13.55 8.30 -92.71 -0.77 12.78 16 42 H 0.13 6.94 6.13 -2.91 -0.02 6.92 16 Total: -1.00 -76.11 373.65 -0.33 -76.45 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: -1.21 Total: 27.43 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: 5.62 Total: -3.57 kcal Atomic # 7 Polarization: -87.38 SS G_CDS: -6.59 Total: -93.97 kcal Atomic # 8 Polarization: -43.28 SS G_CDS: -0.11 Total: -43.39 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 2.03 Total: 40.24 kcal Atomic # 17 Polarization: -3.11 SS G_CDS: -0.08 Total: -3.19 kcal Total: -76.11 -0.33 -76.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455756003.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.451 kcal (2) G-P(sol) polarization free energy of solvation -76.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds