Wall clock time and date at job start Tue Mar 31 2020 23:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35961 * 117.00144 * 2 1 4 4 C 1.38665 * 120.05813 * 0.02562 * 3 2 1 5 5 C 1.38183 * 119.96439 * 179.97438 * 4 3 2 6 6 C 1.38255 * 120.09657 * 0.02562 * 5 4 3 7 7 C 1.50708 * 119.93566 * 179.97438 * 6 5 4 8 8 H 1.08992 * 112.85059 * 11.18836 * 7 6 5 9 9 C 1.54052 * 113.61919 * 142.50700 * 7 6 5 10 10 C 1.53778 * 86.98684 * 139.97657 * 9 7 6 11 11 H 1.08999 * 113.61101 * 219.97948 * 10 9 7 12 12 N 1.46497 * 113.61651 * 89.16077 * 10 9 7 13 13 C 1.34778 * 120.00309 * 105.86587 * 12 10 9 14 14 O 1.21276 * 119.99491 * 359.97438 * 13 12 10 15 15 C 1.50699 * 119.99778 * 180.02562 * 13 12 10 16 16 S 1.81004 * 109.46742 * 179.97438 * 15 13 12 17 17 C 1.76203 * 99.99907 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99736 * 359.97438 * 17 16 15 19 19 C 1.38798 * 119.99832 * 180.27629 * 17 16 15 20 20 N 1.31634 * 120.00296 * 359.72198 * 19 17 16 21 21 Si 1.86801 * 119.99859 * 179.72079 * 19 17 16 22 22 H 1.48496 * 109.47031 * 59.99840 * 21 19 17 23 23 H 1.48504 * 109.46970 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47038 * 299.99817 * 21 19 17 25 25 C 1.53779 * 87.17294 * 334.56728 * 10 9 7 26 26 C 1.38252 * 120.12825 * 0.24584 * 6 5 4 27 27 C 1.38334 * 120.02884 * 359.49812 * 26 6 5 28 28 F 1.35104 * 120.04924 * 180.22666 * 27 26 6 29 29 H 1.09002 * 109.47275 * 59.99238 * 1 2 3 30 30 H 1.08993 * 109.47372 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47002 * 300.00115 * 1 2 3 32 32 H 1.07997 * 120.01741 * 0.02562 * 4 3 2 33 33 H 1.08001 * 119.95036 * 179.97438 * 5 4 3 34 34 H 1.08993 * 113.61645 * 25.46694 * 9 7 6 35 35 H 1.09005 * 113.68824 * 254.49464 * 9 7 6 36 36 H 0.97005 * 119.99622 * 285.85787 * 12 10 9 37 37 H 1.09000 * 109.47396 * 59.99696 * 15 13 12 38 38 H 1.09001 * 109.47080 * 299.99119 * 15 13 12 39 39 H 0.96995 * 120.00136 * 180.02562 * 20 19 17 40 40 H 1.08996 * 113.61610 * 140.02271 * 25 10 9 41 41 H 1.08999 * 113.61299 * 270.84669 * 25 10 9 42 42 H 1.08008 * 119.98910 * 179.72374 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2923 2.3751 0.0005 5 6 1.9216 3.6053 0.0011 6 6 3.3023 3.6777 0.0005 7 6 3.9850 5.0213 0.0005 8 1 3.2983 5.8449 0.1959 9 6 5.2633 5.0641 0.8591 10 6 5.8865 5.9197 -0.2564 11 1 6.9279 5.6744 -0.4646 12 7 5.6637 7.3577 -0.0869 13 6 6.6748 8.1538 0.3134 14 8 7.7691 7.6796 0.5337 15 6 6.4454 9.6329 0.4882 16 16 7.9817 10.4219 1.0298 17 6 7.4403 12.0942 1.1521 18 1 6.4177 12.3493 0.9164 19 6 8.3297 13.0846 1.5452 20 7 9.5763 12.7737 1.8321 21 14 7.7578 14.8587 1.6673 22 1 6.6532 14.9558 2.6550 23 1 8.8895 15.7146 2.1054 24 1 7.2759 15.3159 0.3392 25 6 4.8917 5.2515 -1.2201 26 6 4.0579 2.5199 -0.0057 27 6 3.4333 1.2856 -0.0009 28 9 4.1713 0.1540 -0.0023 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2137 2.3201 0.0014 33 1 1.3341 4.5115 0.0011 34 1 5.7399 4.0916 0.9814 35 1 5.1401 5.5977 1.8016 36 1 4.7883 7.7369 -0.2630 37 1 5.6706 9.7944 1.2376 38 1 6.1290 10.0662 -0.4607 39 1 10.1977 13.4658 2.1072 40 1 4.4688 5.9363 -1.9551 41 1 5.2675 4.3308 -1.6663 42 1 5.1363 2.5791 -0.0106 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000506289385.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:05 Heat of formation + Delta-G solvation = -75.136213 kcal Electronic energy + Delta-G solvation = -25292.161298 eV Core-core repulsion = 21278.993177 eV Total energy + Delta-G solvation = -4013.168121 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.07938 -40.85248 -39.95983 -38.55768 -37.11439 -33.23922 -32.43349 -31.15874 -30.71759 -28.99649 -27.95115 -25.94162 -25.52847 -24.90876 -23.25213 -21.96601 -20.76705 -19.38478 -18.78837 -17.88180 -17.33484 -17.12441 -16.56045 -16.38302 -16.01061 -15.51984 -15.42386 -15.09234 -14.84068 -14.81050 -14.71993 -14.41711 -13.83608 -13.50904 -13.33565 -13.17378 -12.90170 -12.77640 -12.57830 -12.53723 -12.30090 -11.98568 -11.64794 -11.48802 -11.33167 -11.05373 -11.04541 -10.77685 -10.74089 -10.44626 -9.82861 -9.42799 -9.33976 -9.06975 -8.90320 -8.48098 -8.24970 -6.50840 -6.22091 -3.92953 0.71223 0.79602 2.67606 2.99633 3.03991 3.09575 3.22911 3.26896 3.29968 3.67523 3.81238 4.15748 4.19873 4.25111 4.39205 4.46092 4.49941 4.63558 4.69389 4.74238 4.80320 4.89357 4.96685 5.11894 5.12991 5.13224 5.37887 5.47085 5.50920 5.56414 5.58599 5.65486 5.73410 5.80352 5.85300 5.87631 6.02207 6.12108 6.17595 6.20733 6.68273 6.81692 7.58484 7.68697 8.34267 8.59398 9.23014 10.85247 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.033617 B = 0.001687 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.711417 B =16590.433265 C =17157.547392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.087 3.913 4 C -0.180 4.180 5 C -0.085 4.085 6 C -0.073 4.073 7 C -0.072 4.072 8 H 0.102 0.898 9 C -0.147 4.147 10 C 0.124 3.876 11 H 0.104 0.896 12 N -0.722 5.722 13 C 0.534 3.466 14 O -0.515 6.515 15 C -0.154 4.154 16 S -0.059 6.059 17 C -0.537 4.537 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.136 4.136 26 C -0.113 4.113 27 C 0.072 3.928 28 F -0.133 7.133 29 H 0.057 0.943 30 H 0.102 0.898 31 H 0.057 0.943 32 H 0.137 0.863 33 H 0.133 0.867 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.398 0.602 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.269 0.731 40 H 0.077 0.923 41 H 0.095 0.905 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.141 -23.013 -5.786 31.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.041 3.959 4 C -0.198 4.198 5 C -0.104 4.104 6 C -0.073 4.073 7 C -0.090 4.090 8 H 0.120 0.880 9 C -0.185 4.185 10 C 0.018 3.982 11 H 0.122 0.878 12 N -0.375 5.375 13 C 0.321 3.679 14 O -0.389 6.389 15 C -0.304 4.304 16 S 0.167 5.833 17 C -0.685 4.685 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.174 4.174 26 C -0.131 4.131 27 C 0.052 3.948 28 F -0.111 7.111 29 H 0.076 0.924 30 H 0.121 0.879 31 H 0.076 0.924 32 H 0.155 0.845 33 H 0.150 0.850 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.232 0.768 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.096 0.904 41 H 0.114 0.886 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -18.999 -23.971 -5.359 31.053 hybrid contribution -2.335 1.739 -0.220 2.919 sum -21.334 -22.232 -5.578 31.313 Atomic orbital electron populations 1.23117 0.77893 1.04311 1.01520 1.86138 1.21742 1.25859 1.88792 1.19019 0.90848 0.85662 1.00334 1.21131 1.00261 0.91460 1.06978 1.20942 0.93948 0.97289 0.98181 1.19515 0.93039 0.94388 1.00396 1.21641 0.95765 0.93630 0.97947 0.88026 1.23642 0.95164 1.00981 0.98737 1.21724 1.00426 0.80623 0.95453 0.87836 1.45714 1.13900 1.06722 1.71189 1.20333 0.83899 0.88244 0.75462 1.90703 1.24031 1.75932 1.48187 1.23536 1.07947 0.93893 1.05068 1.85412 1.06971 1.03700 1.87188 1.22829 0.99512 0.92721 1.53460 0.90974 1.24988 0.94525 0.99436 0.94586 1.70006 1.03577 1.34085 1.42586 0.86227 0.78280 0.82341 0.78663 1.19955 1.20798 1.19945 1.23429 0.96340 1.01470 0.96208 1.20914 1.01337 0.89620 1.01266 1.16947 0.85912 0.83011 1.08883 1.91510 1.76389 1.48988 1.94248 0.92416 0.87940 0.92394 0.84522 0.84954 0.88975 0.90393 0.76792 0.89198 0.89188 0.92112 0.90412 0.88626 0.83720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.82 10.36 -19.62 -0.20 -3.02 16 3 C 0.09 0.80 6.69 -39.18 -0.26 0.54 16 4 C -0.18 -1.25 9.04 -39.44 -0.36 -1.61 16 5 C -0.09 -0.58 9.70 -39.60 -0.38 -0.96 16 6 C -0.07 -0.56 5.29 -104.61 -0.55 -1.12 16 7 C -0.07 -0.52 3.87 -90.81 -0.35 -0.88 16 8 H 0.10 0.65 8.09 -51.93 -0.42 0.23 16 9 C -0.15 -1.36 7.27 -25.78 -0.19 -1.55 16 10 C 0.12 1.34 4.29 -67.12 -0.29 1.05 16 11 H 0.10 1.33 7.50 -51.93 -0.39 0.94 16 12 N -0.72 -8.97 5.26 -53.02 -0.28 -9.25 16 13 C 0.53 9.62 7.85 -10.99 -0.09 9.54 16 14 O -0.51 -11.46 15.48 5.56 0.09 -11.37 16 15 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 16 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 17 C -0.54 -15.17 9.50 30.94 0.29 -14.88 16 18 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.03 13.22 55.49 0.73 -25.30 16 21 Si 0.92 21.24 29.55 -169.99 -5.02 16.21 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 25 C -0.14 -1.04 7.28 -25.92 -0.19 -1.23 16 26 C -0.11 -0.97 8.57 -39.54 -0.34 -1.31 16 27 C 0.07 0.73 7.31 -39.30 -0.29 0.44 16 28 F -0.13 -1.54 17.11 2.25 0.04 -1.50 16 29 H 0.06 0.19 7.66 -51.93 -0.40 -0.21 16 30 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.19 7.66 -51.93 -0.40 -0.20 16 32 H 0.14 0.61 6.30 -52.49 -0.33 0.28 16 33 H 0.13 0.63 8.05 -52.49 -0.42 0.21 16 34 H 0.09 0.79 6.33 -51.93 -0.33 0.46 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.40 3.74 8.70 -40.82 -0.36 3.38 16 37 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 38 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 39 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.10 0.67 7.72 -51.93 -0.40 0.27 16 42 H 0.15 1.09 6.67 -52.48 -0.35 0.74 16 LS Contribution 372.52 15.07 5.61 5.61 Total: -1.00 -35.50 372.52 -8.57 -44.07 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -5.45 Total: 0.00 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -1.87 Total: -11.64 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: 0.45 Total: -34.55 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.12 Total: -14.39 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.50 -8.57 -44.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000506289385.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.071 kcal (2) G-P(sol) polarization free energy of solvation -35.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds