Wall clock time and date at job start Tue Mar 31 2020 23:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 111.00303 * 2 1 4 4 C 1.46900 * 111.00256 * 123.95304 * 2 1 3 5 5 H 1.09005 * 109.46762 * 300.00152 * 4 2 1 6 6 C 1.50696 * 109.47499 * 179.97438 * 4 2 1 7 7 O 1.21284 * 120.00096 * 340.00143 * 6 4 2 8 8 N 1.34774 * 119.99838 * 160.00079 * 6 4 2 9 9 C 1.46506 * 120.00072 * 180.02562 * 8 6 4 10 10 C 1.50703 * 109.47289 * 179.97438 * 9 8 6 11 11 O 1.21285 * 119.99571 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99773 * 179.97438 * 10 9 8 13 13 C 1.37091 * 119.99763 * 179.97438 * 12 10 9 14 14 H 1.07998 * 120.00286 * 0.02562 * 13 12 10 15 15 C 1.38956 * 120.00028 * 180.02562 * 13 12 10 16 16 N 1.31411 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00028 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47418 * 89.99825 * 17 15 13 19 19 H 1.48498 * 109.47091 * 209.99886 * 17 15 13 20 20 H 1.48498 * 109.46997 * 329.99696 * 17 15 13 21 21 C 1.50705 * 109.46946 * 59.99585 * 4 2 1 22 22 C 1.38243 * 119.98507 * 39.72926 * 21 4 2 23 23 C 1.38216 * 120.01074 * 179.72778 * 22 21 4 24 24 C 1.38346 * 119.98763 * 0.54274 * 23 22 21 25 25 Cl 1.73606 * 120.01533 * 179.74963 * 24 23 22 26 26 C 1.38353 * 119.97318 * 359.73304 * 24 23 22 27 27 C 1.38212 * 119.98725 * 359.97438 * 26 24 23 28 28 H 1.09003 * 109.46941 * 300.00268 * 1 2 3 29 29 H 1.09001 * 109.46932 * 59.99748 * 1 2 3 30 30 H 1.08987 * 109.47262 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47301 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47000 * 299.99918 * 3 2 1 33 33 H 1.08994 * 109.47414 * 60.00250 * 3 2 1 34 34 H 0.97001 * 120.00676 * 359.97438 * 8 6 4 35 35 H 1.09001 * 109.47060 * 300.00359 * 9 8 6 36 36 H 1.09004 * 109.47073 * 59.99848 * 9 8 6 37 37 H 0.96998 * 120.00166 * 0.02562 * 12 10 9 38 38 H 0.96996 * 120.00054 * 180.02562 * 16 15 13 39 39 H 1.08003 * 119.99335 * 0.02562 * 22 21 4 40 40 H 1.08002 * 120.00505 * 180.27761 * 23 22 21 41 41 H 1.08001 * 120.00871 * 179.97438 * 26 24 23 42 42 H 1.08005 * 119.99393 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 1 1.6459 -0.3200 2.0688 6 6 3.5019 -0.7440 1.1039 7 8 4.0817 -0.4823 0.0713 8 7 4.2049 -1.0153 2.2213 9 6 5.6694 -0.9935 2.1888 10 6 6.2074 -1.3278 3.5562 11 8 5.4427 -1.5618 4.4681 12 7 7.5382 -1.3678 3.7655 13 6 8.0275 -1.6714 5.0096 14 1 7.3467 -1.8790 5.8219 15 6 9.3996 -1.7122 5.2256 16 7 10.2281 -1.4591 4.2374 17 14 10.0664 -2.1266 6.9206 18 1 10.2558 -3.5952 7.0326 19 1 11.3692 -1.4428 7.1208 20 1 9.1041 -1.6712 7.9559 21 6 1.5122 -2.1907 1.0506 22 6 1.4549 -2.8272 -0.1753 23 6 1.0171 -4.1358 -0.2550 24 6 0.6255 -4.8049 0.8908 25 17 0.0693 -6.4464 0.7907 26 6 0.6777 -4.1655 2.1166 27 6 1.1214 -2.8590 2.1959 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0275 0.0005 31 1 3.0852 1.3423 -0.0005 32 1 1.6460 1.8947 -0.8900 33 1 1.6461 1.8947 0.8899 34 1 3.7413 -1.2243 3.0473 35 1 6.0278 -1.7278 1.4674 36 1 6.0116 -0.0005 1.8969 37 1 8.1497 -1.1810 3.0361 38 1 11.1858 -1.4879 4.3881 39 1 1.7569 -2.3034 -1.0702 40 1 0.9766 -4.6344 -1.2122 41 1 0.3717 -4.6872 3.0114 42 1 1.1625 -2.3599 3.1528 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567624011.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:56 Heat of formation + Delta-G solvation = -41.146856 kcal Electronic energy + Delta-G solvation = -26694.147314 eV Core-core repulsion = 22700.329337 eV Total energy + Delta-G solvation = -3993.817977 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.63177 -39.11934 -38.24826 -36.97495 -36.40469 -34.49576 -33.73955 -31.95424 -31.39872 -31.25670 -28.66969 -27.56092 -26.80315 -24.53903 -23.23603 -22.67312 -21.80586 -20.03256 -19.54717 -18.16314 -17.58632 -17.25479 -16.37780 -16.17100 -15.66934 -15.31400 -15.07766 -14.76652 -14.70887 -14.55763 -14.24663 -13.86254 -13.76416 -13.64392 -13.60952 -13.22345 -12.87012 -12.46959 -12.27648 -12.23472 -12.04937 -11.79782 -11.66396 -11.61446 -11.53637 -11.36281 -11.14044 -11.00054 -10.48246 -10.34628 -9.85573 -9.66527 -9.22673 -8.86764 -8.74728 -8.66844 -8.57121 -8.13280 -6.54278 -3.96405 0.83822 1.10759 1.91977 2.68127 3.04876 3.09716 3.20624 3.25997 3.36807 3.70416 3.87441 4.09424 4.43088 4.57050 4.70875 4.82192 4.85508 4.87821 5.03250 5.13379 5.14223 5.17638 5.28217 5.41438 5.43880 5.45651 5.66839 5.78116 5.84358 5.90920 5.93148 5.96548 6.02968 6.03730 6.25540 6.54915 6.60441 6.68600 6.78353 7.43325 7.72137 7.88716 8.34789 8.42316 9.01597 9.35915 9.83511 10.62545 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010951 B = 0.002800 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.117879 B = 9999.139481 C =11856.228847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.520 5.520 3 C 0.015 3.985 4 C 0.109 3.891 5 H 0.072 0.928 6 C 0.520 3.480 7 O -0.524 6.524 8 N -0.704 5.704 9 C 0.110 3.890 10 C 0.428 3.572 11 O -0.597 6.597 12 N -0.548 5.548 13 C -0.306 4.306 14 H 0.106 0.894 15 C 0.026 3.974 16 N -0.894 5.894 17 Si 0.933 3.067 18 H -0.276 1.276 19 H -0.282 1.282 20 H -0.268 1.268 21 C -0.078 4.078 22 C -0.070 4.070 23 C -0.116 4.116 24 C -0.030 4.030 25 Cl -0.075 7.075 26 C -0.110 4.110 27 C -0.095 4.095 28 H 0.027 0.973 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.023 0.977 34 H 0.410 0.590 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.396 0.604 38 H 0.275 0.725 39 H 0.145 0.855 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.970 -0.623 -8.848 21.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.244 5.244 3 C -0.133 4.133 4 C -0.002 4.002 5 H 0.090 0.910 6 C 0.304 3.696 7 O -0.400 6.400 8 N -0.358 5.358 9 C -0.018 4.018 10 C 0.213 3.787 11 O -0.484 6.484 12 N -0.183 5.183 13 C -0.435 4.435 14 H 0.123 0.877 15 C -0.177 4.177 16 N -0.534 5.534 17 Si 0.759 3.241 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.193 1.193 21 C -0.079 4.079 22 C -0.088 4.088 23 C -0.134 4.134 24 C -0.057 4.057 25 Cl -0.046 7.046 26 C -0.129 4.129 27 C -0.113 4.113 28 H 0.045 0.955 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.042 0.958 34 H 0.247 0.753 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.230 0.770 38 H 0.085 0.915 39 H 0.163 0.837 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -19.688 -0.942 -9.416 21.844 hybrid contribution 0.333 0.023 1.538 1.574 sum -19.354 -0.920 -7.878 20.917 Atomic orbital electron populations 1.22470 0.86591 1.02565 1.00937 1.61709 1.07713 1.14424 1.40536 1.22595 1.02929 0.87275 1.00476 1.20448 0.92700 0.92437 0.94660 0.90989 1.20038 0.88507 0.77416 0.83676 1.90684 1.70988 1.47685 1.30663 1.45682 1.06913 1.70202 1.12996 1.20966 0.80308 1.02916 0.97580 1.19710 0.83747 0.85955 0.89270 1.90491 1.56896 1.56481 1.44556 1.41791 1.04604 1.59418 1.12439 1.19727 0.91073 1.44663 0.88042 0.87665 1.25329 0.95833 0.96885 0.99622 1.69611 1.03853 1.48027 1.31907 0.85815 0.78202 0.78619 0.81416 1.20229 1.20780 1.19301 1.19474 1.00224 0.94218 0.94014 1.21103 0.96252 0.93098 0.98369 1.21096 0.99971 0.94779 0.97580 1.21008 1.02656 0.86505 0.95483 1.98372 1.88015 1.19540 1.98642 1.20987 1.00652 0.94785 0.96482 1.21039 0.97829 0.94167 0.98291 0.95469 0.90825 0.90962 0.89363 0.90927 0.95817 0.75258 0.89770 0.89786 0.77030 0.91550 0.83734 0.84823 0.84673 0.84750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.26 60.06 0.56 0.75 16 2 N -0.52 -5.74 3.93 -246.01 -0.97 -6.70 16 3 C 0.01 0.16 9.19 60.06 0.55 0.71 16 4 C 0.11 1.29 2.08 -70.02 -0.15 1.14 16 5 H 0.07 0.75 8.00 -51.93 -0.42 0.33 16 6 C 0.52 7.81 6.19 -10.99 -0.07 7.75 16 7 O -0.52 -9.25 14.71 5.55 0.08 -9.17 16 8 N -0.70 -11.25 5.53 -61.47 -0.34 -11.59 16 9 C 0.11 1.97 6.15 -5.19 -0.03 1.94 16 10 C 0.43 9.58 7.85 -10.98 -0.09 9.50 16 11 O -0.60 -14.90 15.24 5.55 0.08 -14.81 16 12 N -0.55 -13.38 5.29 -10.96 -0.06 -13.43 16 13 C -0.31 -8.20 9.68 -14.93 -0.14 -8.35 16 14 H 0.11 2.94 7.16 -52.49 -0.38 2.56 16 15 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 16 N -0.89 -23.65 13.05 55.50 0.72 -22.92 16 17 Si 0.93 20.34 29.55 -169.99 -5.02 15.31 16 18 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 19 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 21 C -0.08 -0.88 3.73 -104.62 -0.39 -1.27 16 22 C -0.07 -0.77 8.41 -39.59 -0.33 -1.11 16 23 C -0.12 -1.19 9.83 -39.55 -0.39 -1.58 16 24 C -0.03 -0.32 6.32 -39.50 -0.25 -0.57 16 25 Cl -0.07 -0.75 28.96 -51.86 -1.50 -2.25 16 26 C -0.11 -1.12 9.83 -39.55 -0.39 -1.51 16 27 C -0.09 -0.97 9.67 -39.59 -0.38 -1.36 16 28 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.61 6.36 -51.94 -0.33 0.28 16 31 H 0.09 1.17 5.68 -51.93 -0.30 0.88 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.41 6.44 7.44 -40.82 -0.30 6.14 16 35 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 37 H 0.40 9.31 7.90 -40.82 -0.32 8.99 16 38 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 39 H 0.14 1.66 7.71 -52.48 -0.40 1.26 16 40 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 41 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 42 H 0.13 1.17 8.04 -52.48 -0.42 0.75 16 LS Contribution 372.83 15.07 5.62 5.62 Total: -1.00 -30.37 372.83 -8.36 -38.73 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -5.39 Total: 14.60 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -1.60 Total: 6.63 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: -0.64 Total: -54.66 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: 0.17 Total: -23.98 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.50 Total: -2.25 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.37 -8.36 -38.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567624011.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.416 kcal (2) G-P(sol) polarization free energy of solvation -30.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds