Wall clock time and date at job start Tue Mar 31 2020 23:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 111.00303 * 2 1 4 4 C 1.46900 * 111.00256 * 123.95304 * 2 1 3 5 5 H 1.09005 * 109.46762 * 300.00152 * 4 2 1 6 6 C 1.50696 * 109.47499 * 179.97438 * 4 2 1 7 7 O 1.21284 * 120.00096 * 340.00143 * 6 4 2 8 8 N 1.34774 * 119.99838 * 160.00079 * 6 4 2 9 9 C 1.46506 * 120.00072 * 180.02562 * 8 6 4 10 10 C 1.50703 * 109.47289 * 179.97438 * 9 8 6 11 11 O 1.21285 * 119.99571 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99773 * 179.97438 * 10 9 8 13 13 C 1.37091 * 119.99763 * 179.97438 * 12 10 9 14 14 H 1.07998 * 120.00286 * 0.02562 * 13 12 10 15 15 C 1.38956 * 120.00028 * 180.02562 * 13 12 10 16 16 N 1.31411 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00028 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47418 * 89.99825 * 17 15 13 19 19 H 1.48498 * 109.47091 * 209.99886 * 17 15 13 20 20 H 1.48498 * 109.46997 * 329.99696 * 17 15 13 21 21 C 1.50705 * 109.46946 * 59.99585 * 4 2 1 22 22 C 1.38243 * 119.98507 * 39.72926 * 21 4 2 23 23 C 1.38216 * 120.01074 * 179.72778 * 22 21 4 24 24 C 1.38346 * 119.98763 * 0.54274 * 23 22 21 25 25 Cl 1.73606 * 120.01533 * 179.74963 * 24 23 22 26 26 C 1.38353 * 119.97318 * 359.73304 * 24 23 22 27 27 C 1.38212 * 119.98725 * 359.97438 * 26 24 23 28 28 H 1.09003 * 109.46941 * 300.00268 * 1 2 3 29 29 H 1.09001 * 109.46932 * 59.99748 * 1 2 3 30 30 H 1.08987 * 109.47262 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47301 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47000 * 299.99918 * 3 2 1 33 33 H 1.08994 * 109.47414 * 60.00250 * 3 2 1 34 34 H 0.97001 * 120.00676 * 359.97438 * 8 6 4 35 35 H 1.09001 * 109.47060 * 300.00359 * 9 8 6 36 36 H 1.09004 * 109.47073 * 59.99848 * 9 8 6 37 37 H 0.96998 * 120.00166 * 0.02562 * 12 10 9 38 38 H 0.96996 * 120.00054 * 180.02562 * 16 15 13 39 39 H 1.08003 * 119.99335 * 0.02562 * 22 21 4 40 40 H 1.08002 * 120.00505 * 180.27761 * 23 22 21 41 41 H 1.08001 * 120.00871 * 179.97438 * 26 24 23 42 42 H 1.08005 * 119.99393 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 1 1.6459 -0.3200 2.0688 6 6 3.5019 -0.7440 1.1039 7 8 4.0817 -0.4823 0.0713 8 7 4.2049 -1.0153 2.2213 9 6 5.6694 -0.9935 2.1888 10 6 6.2074 -1.3278 3.5562 11 8 5.4427 -1.5618 4.4681 12 7 7.5382 -1.3678 3.7655 13 6 8.0275 -1.6714 5.0096 14 1 7.3467 -1.8790 5.8219 15 6 9.3996 -1.7122 5.2256 16 7 10.2281 -1.4591 4.2374 17 14 10.0664 -2.1266 6.9206 18 1 10.2558 -3.5952 7.0326 19 1 11.3692 -1.4428 7.1208 20 1 9.1041 -1.6712 7.9559 21 6 1.5122 -2.1907 1.0506 22 6 1.4549 -2.8272 -0.1753 23 6 1.0171 -4.1358 -0.2550 24 6 0.6255 -4.8049 0.8908 25 17 0.0693 -6.4464 0.7907 26 6 0.6777 -4.1655 2.1166 27 6 1.1214 -2.8590 2.1959 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0275 0.0005 31 1 3.0852 1.3423 -0.0005 32 1 1.6460 1.8947 -0.8900 33 1 1.6461 1.8947 0.8899 34 1 3.7413 -1.2243 3.0473 35 1 6.0278 -1.7278 1.4674 36 1 6.0116 -0.0005 1.8969 37 1 8.1497 -1.1810 3.0361 38 1 11.1858 -1.4879 4.3881 39 1 1.7569 -2.3034 -1.0702 40 1 0.9766 -4.6344 -1.2122 41 1 0.3717 -4.6872 3.0114 42 1 1.1625 -2.3599 3.1528 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567624011.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:55 Heat of formation + Delta-G solvation = -61.675709 kcal Electronic energy + Delta-G solvation = -26695.037512 eV Core-core repulsion = 22700.329337 eV Total energy + Delta-G solvation = -3994.708175 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.67843 -40.40001 -39.72485 -37.91220 -37.23445 -36.23524 -35.31146 -33.39027 -32.80104 -32.05425 -29.90249 -28.47552 -27.93879 -26.32192 -24.05869 -23.48665 -22.83855 -21.40046 -21.05721 -20.05633 -18.76497 -18.19819 -17.47923 -17.30104 -17.11980 -16.53147 -16.42401 -16.36224 -15.82924 -15.57293 -15.48125 -15.24620 -15.08236 -14.50606 -14.42533 -14.27439 -14.00830 -13.82838 -13.54584 -13.54111 -13.17009 -12.97962 -12.90250 -12.65464 -12.45712 -12.42788 -12.37497 -12.23932 -12.12719 -11.78767 -11.56873 -11.03034 -10.56167 -10.20872 -10.08324 -10.02454 -9.60188 -9.38633 -8.51147 -6.01229 0.00450 0.30669 1.11800 1.36239 1.42939 1.51139 1.55223 1.87419 1.90870 2.29830 2.54415 2.95811 3.13058 3.16202 3.54512 3.72562 3.78268 3.94154 4.04856 4.21490 4.28058 4.35559 4.41263 4.42197 4.44708 4.48951 4.66118 4.68318 4.70000 4.99956 5.04181 5.05453 5.14972 5.23109 5.25782 5.38515 5.43946 5.74982 5.83985 5.91812 6.01461 6.44815 6.50930 7.03405 7.12283 7.44225 7.94024 8.65753 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010951 B = 0.002800 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.117879 B = 9999.139481 C =11856.228847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.532 5.532 3 C 0.017 3.983 4 C 0.117 3.883 5 H 0.089 0.911 6 C 0.521 3.479 7 O -0.551 6.551 8 N -0.705 5.705 9 C 0.123 3.877 10 C 0.434 3.566 11 O -0.622 6.622 12 N -0.560 5.560 13 C -0.336 4.336 14 H 0.087 0.913 15 C -0.010 4.010 16 N -0.916 5.916 17 Si 0.996 3.004 18 H -0.271 1.271 19 H -0.272 1.272 20 H -0.269 1.269 21 C -0.086 4.086 22 C -0.076 4.076 23 C -0.117 4.117 24 C -0.038 4.038 25 Cl -0.071 7.071 26 C -0.114 4.114 27 C -0.096 4.096 28 H 0.036 0.964 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.034 0.966 34 H 0.412 0.588 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.398 0.602 38 H 0.280 0.720 39 H 0.138 0.862 40 H 0.147 0.853 41 H 0.149 0.851 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.990 -0.714 -8.588 22.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.257 5.257 3 C -0.130 4.130 4 C 0.006 3.994 5 H 0.106 0.894 6 C 0.307 3.693 7 O -0.429 6.429 8 N -0.359 5.359 9 C -0.005 4.005 10 C 0.221 3.779 11 O -0.510 6.510 12 N -0.195 5.195 13 C -0.466 4.466 14 H 0.105 0.895 15 C -0.211 4.211 16 N -0.556 5.556 17 Si 0.819 3.181 18 H -0.196 1.196 19 H -0.197 1.197 20 H -0.193 1.193 21 C -0.087 4.087 22 C -0.094 4.094 23 C -0.136 4.136 24 C -0.064 4.064 25 Cl -0.042 7.042 26 C -0.133 4.133 27 C -0.115 4.115 28 H 0.055 0.945 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.052 0.948 34 H 0.250 0.750 35 H 0.109 0.891 36 H 0.114 0.886 37 H 0.232 0.768 38 H 0.089 0.911 39 H 0.156 0.844 40 H 0.165 0.835 41 H 0.167 0.833 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -20.730 -1.031 -9.175 22.693 hybrid contribution 0.576 0.042 1.394 1.509 sum -20.154 -0.989 -7.782 21.627 Atomic orbital electron populations 1.22495 0.84799 1.02903 1.01988 1.61704 1.09259 1.14390 1.40341 1.22538 1.01205 0.87572 1.01719 1.20377 0.89953 0.93278 0.95827 0.89379 1.20618 0.89897 0.76086 0.82668 1.90672 1.71934 1.48743 1.31541 1.45695 1.05962 1.70648 1.13605 1.20764 0.81652 1.03604 0.94489 1.20385 0.82975 0.84002 0.90574 1.90468 1.57394 1.57044 1.46066 1.41845 1.05405 1.60279 1.11972 1.19735 0.91564 1.46580 0.88691 0.89498 1.26117 0.95589 0.96230 1.03157 1.69677 1.04244 1.48253 1.33469 0.84885 0.77654 0.78553 0.77020 1.19627 1.19717 1.19335 1.19484 1.00842 0.93951 0.94408 1.21088 0.96687 0.93455 0.98209 1.21238 0.99555 0.94552 0.98247 1.21146 1.02736 0.86770 0.95771 1.98373 1.87958 1.19256 1.98646 1.21212 1.00286 0.94849 0.96943 1.21233 0.97360 0.94249 0.98660 0.94513 0.89608 0.90982 0.92102 0.89536 0.94753 0.74969 0.89108 0.88636 0.76760 0.91089 0.84425 0.83542 0.83280 0.83224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.26 127.69 1.18 1.56 16 2 N -0.53 -10.99 3.93 -932.22 -3.66 -14.65 16 3 C 0.02 0.35 9.19 127.69 1.17 1.53 16 4 C 0.12 2.60 2.08 43.42 0.09 2.69 16 5 H 0.09 1.66 8.00 -2.38 -0.02 1.64 16 6 C 0.52 15.29 6.19 87.66 0.54 15.83 16 7 O -0.55 -19.31 14.71 -3.04 -0.04 -19.35 16 8 N -0.70 -22.03 5.53 -466.77 -2.58 -24.61 16 9 C 0.12 4.35 6.15 85.63 0.53 4.87 16 10 C 0.43 19.50 7.85 87.66 0.69 20.19 16 11 O -0.62 -31.12 15.24 -3.05 -0.05 -31.17 16 12 N -0.56 -27.66 5.29 -306.99 -1.62 -29.28 16 13 C -0.34 -18.28 9.68 84.04 0.81 -17.47 16 14 H 0.09 4.96 7.16 -2.91 -0.02 4.94 16 15 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 16 N -0.92 -48.33 13.05 21.66 0.28 -48.05 16 17 Si 1.00 41.32 29.55 68.60 2.03 43.35 16 18 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 19 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 20 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 21 C -0.09 -1.80 3.73 -19.86 -0.07 -1.88 16 22 C -0.08 -1.61 8.41 22.27 0.19 -1.42 16 23 C -0.12 -2.28 9.83 22.29 0.22 -2.06 16 24 C -0.04 -0.74 6.32 22.32 0.14 -0.60 16 25 Cl -0.07 -1.33 28.96 -2.72 -0.08 -1.41 16 26 C -0.11 -2.14 9.83 22.29 0.22 -1.92 16 27 C -0.10 -1.82 9.67 22.26 0.22 -1.61 16 28 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.09 6.36 -2.39 -0.02 1.07 16 31 H 0.06 1.59 5.68 -2.38 -0.01 1.58 16 32 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.41 12.62 7.44 -92.71 -0.69 11.93 16 35 H 0.09 3.13 8.14 -2.39 -0.02 3.12 16 36 H 0.10 3.20 8.14 -2.38 -0.02 3.18 16 37 H 0.40 18.99 7.90 -92.71 -0.73 18.26 16 38 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 39 H 0.14 3.09 7.71 -2.91 -0.02 3.07 16 40 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 41 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 42 H 0.15 2.30 8.04 -2.91 -0.02 2.28 16 Total: -1.00 -64.25 372.83 0.32 -63.93 By element: Atomic # 1 Polarization: 41.94 SS G_CDS: -0.35 Total: 41.59 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: 6.39 Total: 19.65 kcal Atomic # 7 Polarization: -109.01 SS G_CDS: -7.58 Total: -116.60 kcal Atomic # 8 Polarization: -50.43 SS G_CDS: -0.09 Total: -50.52 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.08 Total: -1.41 kcal Total: -64.25 0.32 -63.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567624011.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.253 kcal (2) G-P(sol) polarization free energy of solvation -64.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds