Wall clock time and date at job start Tue Mar 31 2020 22:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.67978 * 2 1 4 4 C 1.53290 * 109.67884 * 239.48117 * 2 1 3 5 5 H 1.08992 * 109.51629 * 307.91278 * 4 2 1 6 6 C 1.50701 * 109.51167 * 68.01844 * 4 2 1 7 7 C 1.38270 * 119.98949 * 84.72430 * 6 4 2 8 8 C 1.38222 * 120.05200 * 180.28245 * 7 6 4 9 9 C 1.38212 * 120.02429 * 359.97438 * 8 7 6 10 10 C 1.38441 * 119.97963 * 0.02562 * 9 8 7 11 11 F 1.35097 * 120.02716 * 180.02562 * 10 9 8 12 12 C 1.38179 * 119.98624 * 264.99676 * 6 4 2 13 13 O 1.42964 * 109.22194 * 187.93945 * 4 2 1 14 14 C 1.42954 * 114.16758 * 62.58097 * 13 4 2 15 15 C 1.53301 * 109.22718 * 297.42090 * 14 13 4 16 16 N 1.47148 * 108.37925 * 52.29757 * 15 14 13 17 17 C 1.34782 * 120.98011 * 129.49025 * 16 15 14 18 18 O 1.21277 * 120.00322 * 184.78783 * 17 16 15 19 19 C 1.50701 * 119.99624 * 4.78591 * 17 16 15 20 20 S 1.81002 * 109.46788 * 179.97438 * 19 17 16 21 21 C 1.76201 * 100.00032 * 179.97438 * 20 19 17 22 22 H 1.08004 * 120.00095 * 359.97438 * 21 20 19 23 23 C 1.38795 * 120.00093 * 180.02562 * 21 20 19 24 24 N 1.31631 * 120.00076 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00149 * 180.02562 * 23 21 20 26 26 H 1.48508 * 109.46973 * 59.99429 * 25 23 21 27 27 H 1.48497 * 109.47429 * 179.97438 * 25 23 21 28 28 H 1.48508 * 109.46957 * 299.99593 * 25 23 21 29 29 H 1.09000 * 109.47337 * 186.35910 * 1 2 3 30 30 H 1.09009 * 109.46948 * 306.35952 * 1 2 3 31 31 H 1.09001 * 109.47180 * 66.35448 * 1 2 3 32 32 H 1.08003 * 119.97333 * 0.24899 * 7 6 4 33 33 H 1.08000 * 119.98670 * 179.97438 * 8 7 6 34 34 H 1.08004 * 120.01281 * 179.97438 * 9 8 7 35 35 H 1.08001 * 120.00856 * 359.69871 * 12 6 4 36 36 H 1.09010 * 109.51457 * 177.49499 * 14 13 4 37 37 H 1.09002 * 109.55268 * 57.37263 * 14 13 4 38 38 H 1.09006 * 109.67859 * 292.58187 * 15 14 13 39 39 H 1.08992 * 109.71157 * 172.04038 * 15 14 13 40 40 H 1.08999 * 109.47016 * 299.99702 * 19 17 16 41 41 H 1.08998 * 109.47508 * 60.00408 * 19 17 16 42 42 H 0.97000 * 119.99792 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0263 0.0000 4 6 2.0462 -0.7330 -1.2434 5 1 1.5744 -1.7132 -1.3103 6 6 1.7150 0.0701 -2.4748 7 6 2.5565 1.0888 -2.8826 8 6 2.2510 1.8300 -4.0085 9 6 1.1041 1.5534 -4.7285 10 6 0.2608 0.5338 -4.3212 11 9 -0.8603 0.2622 -5.0245 12 6 0.5677 -0.2080 -3.1929 13 8 3.4636 -0.8900 -1.1426 14 6 3.8867 -1.6883 -0.0348 15 6 3.4647 -1.0043 1.2706 16 7 2.0263 -0.7039 1.1931 17 6 1.1882 -1.0625 2.1859 18 8 -0.0054 -0.8844 2.0659 19 6 1.7344 -1.6848 3.4451 20 16 0.3707 -2.0506 4.5777 21 6 1.2692 -2.7492 5.9228 22 1 2.3442 -2.8371 5.8665 23 6 0.5955 -3.1874 7.0544 24 7 -0.7147 -3.0808 7.1229 25 14 1.5481 -3.9274 8.4807 26 1 2.5137 -2.9272 9.0029 27 1 0.6036 -4.3132 9.5597 28 1 2.2845 -5.1295 8.0136 29 1 -0.3634 -1.0213 0.1138 30 1 -0.3633 0.6093 0.8277 31 1 -0.3633 0.4122 -0.9414 32 1 3.4529 1.3057 -2.3205 33 1 2.9088 2.6257 -4.3258 34 1 0.8653 2.1330 -5.6080 35 1 -0.0891 -1.0040 -2.8744 36 1 4.9714 -1.7948 -0.0559 37 1 3.4230 -2.6729 -0.0964 38 1 4.0266 -0.0791 1.3985 39 1 3.6560 -1.6694 2.1127 40 1 2.2583 -2.6077 3.1966 41 1 2.4265 -0.9912 3.9225 42 1 -1.1855 -3.3868 7.9138 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592695763.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:38 Heat of formation + Delta-G solvation = -79.565264 kcal Electronic energy + Delta-G solvation = -26866.615289 eV Core-core repulsion = 22853.255110 eV Total energy + Delta-G solvation = -4013.360180 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -49.13806 -40.87001 -39.28765 -38.05861 -34.77946 -34.07452 -32.46817 -31.18843 -30.75408 -29.46743 -27.96326 -26.45991 -25.51587 -23.22394 -23.19568 -22.84116 -21.22352 -19.21705 -17.90218 -17.66762 -17.05964 -16.54429 -16.44921 -16.26120 -15.91396 -15.81953 -15.58995 -15.10081 -15.00366 -14.83936 -14.20723 -14.04369 -13.70650 -13.47150 -13.41503 -13.09868 -12.65008 -12.49401 -12.42200 -12.23730 -12.06959 -12.01385 -11.77555 -11.35234 -11.25145 -11.07044 -11.06561 -10.97004 -10.80260 -10.39529 -9.86012 -9.35410 -9.09694 -9.02807 -8.80897 -8.44326 -8.28589 -6.54958 -6.25406 -3.96620 0.78956 0.88267 2.73443 2.94301 3.14989 3.20482 3.21632 3.26091 3.35014 3.50346 4.01699 4.16335 4.34192 4.45264 4.48561 4.61629 4.70315 4.82577 4.85521 4.91598 4.97601 5.06184 5.09716 5.12495 5.22022 5.37329 5.42081 5.46994 5.57225 5.63717 5.75348 5.77204 5.78483 5.80954 5.99893 6.04348 6.10434 6.16312 6.34760 6.55688 6.66532 6.82158 7.43995 7.55218 8.30794 8.47422 9.19778 10.81912 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.025161 B = 0.002408 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.558010 B =11626.614526 C =12395.438270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.127 3.873 3 H 0.077 0.923 4 C 0.121 3.879 5 H 0.076 0.924 6 C -0.048 4.048 7 C -0.102 4.102 8 C -0.094 4.094 9 C -0.152 4.152 10 C 0.097 3.903 11 F -0.139 7.139 12 C -0.139 4.139 13 O -0.373 6.373 14 C 0.049 3.951 15 C 0.073 3.927 16 N -0.622 5.622 17 C 0.537 3.463 18 O -0.504 6.504 19 C -0.153 4.153 20 S -0.059 6.059 21 C -0.537 4.537 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.046 0.954 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.110 0.890 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.040 7.750 -22.111 25.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.023 3.977 3 H 0.095 0.905 4 C 0.062 3.938 5 H 0.094 0.906 6 C -0.049 4.049 7 C -0.120 4.120 8 C -0.112 4.112 9 C -0.171 4.171 10 C 0.078 3.922 11 F -0.118 7.118 12 C -0.157 4.157 13 O -0.291 6.291 14 C -0.029 4.029 15 C -0.051 4.051 16 N -0.360 5.360 17 C 0.325 3.675 18 O -0.378 6.378 19 C -0.303 4.303 20 S 0.168 5.832 21 C -0.685 4.685 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.156 0.844 36 H 0.128 0.872 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.119 0.881 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.160 8.049 -22.306 25.078 hybrid contribution 1.778 -0.885 1.168 2.304 sum 9.938 7.164 -21.138 24.432 Atomic orbital electron populations 1.22220 0.91428 1.04718 1.01311 1.21803 0.97012 0.95408 0.83437 0.90474 1.21321 0.82603 0.98048 0.91818 0.90566 1.19251 0.94305 0.96231 0.95082 1.21096 0.99659 0.94548 0.96706 1.21033 0.96102 0.99337 0.94699 1.21194 0.95679 0.98219 1.02000 1.17572 0.84727 0.97538 0.92355 1.91513 1.49401 1.93224 1.77636 1.20955 0.98546 1.01501 0.94736 1.87921 1.20849 1.72201 1.48163 1.23029 1.00905 0.93786 0.85135 1.22442 0.81491 1.01702 0.99473 1.48233 1.07997 1.60173 1.19583 1.20337 0.86288 0.77333 0.83530 1.90750 1.15106 1.52663 1.79249 1.23608 1.06503 1.02766 0.97446 1.85394 1.05901 1.79825 1.12087 1.22807 0.95371 1.47232 1.03064 0.91006 1.24990 0.95073 0.95371 0.98102 1.70004 1.06782 1.44240 1.29210 0.86228 0.79327 0.79393 0.80576 1.19921 1.20786 1.19924 0.90680 0.90002 0.93561 0.84663 0.84823 0.84751 0.84393 0.87239 0.92240 0.90527 0.88108 0.89390 0.89251 0.92085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 7.48 37.16 0.28 -1.67 16 2 C 0.13 1.58 3.11 -67.42 -0.21 1.37 16 3 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 4 C 0.12 1.31 2.45 -27.73 -0.07 1.24 16 5 H 0.08 0.86 8.05 -51.93 -0.42 0.45 16 6 C -0.05 -0.48 4.53 -104.63 -0.47 -0.95 16 7 C -0.10 -0.89 9.35 -39.58 -0.37 -1.26 16 8 C -0.09 -0.69 10.04 -39.60 -0.40 -1.09 16 9 C -0.15 -1.24 10.03 -39.52 -0.40 -1.63 16 10 C 0.10 0.96 7.30 -39.42 -0.29 0.67 16 11 F -0.14 -1.51 17.27 2.25 0.04 -1.47 16 12 C -0.14 -1.38 8.27 -39.51 -0.33 -1.71 16 13 O -0.37 -3.86 9.53 -35.23 -0.34 -4.20 16 14 C 0.05 0.43 6.98 37.31 0.26 0.69 16 15 C 0.07 0.74 6.52 -3.53 -0.02 0.72 16 16 N -0.62 -8.55 3.02 -164.75 -0.50 -9.05 16 17 C 0.54 9.68 7.62 -10.98 -0.08 9.60 16 18 O -0.50 -10.62 11.42 5.56 0.06 -10.55 16 19 C -0.15 -2.97 4.60 36.01 0.17 -2.81 16 20 S -0.06 -1.55 20.57 -107.50 -2.21 -3.77 16 21 C -0.54 -14.97 9.50 30.94 0.29 -14.67 16 22 H 0.07 1.89 7.80 -52.48 -0.41 1.48 16 23 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 24 N -0.87 -25.83 13.22 55.49 0.73 -25.10 16 25 Si 0.92 21.07 29.55 -169.99 -5.02 16.05 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 29 H 0.07 1.18 6.81 -51.93 -0.35 0.83 16 30 H 0.08 1.33 6.77 -51.92 -0.35 0.98 16 31 H 0.05 0.55 6.31 -51.93 -0.33 0.22 16 32 H 0.14 1.08 7.63 -52.48 -0.40 0.68 16 33 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 34 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 35 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.11 0.69 8.14 -51.92 -0.42 0.26 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.10 1.00 6.07 -51.93 -0.32 0.68 16 40 H 0.09 1.57 7.46 -51.92 -0.39 1.18 16 41 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 42 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 359.30 15.07 5.41 5.41 Total: -1.00 -33.08 359.30 -9.03 -42.11 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -5.48 Total: 0.07 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -1.74 Total: -9.52 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: 0.24 Total: -34.14 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.27 Total: -14.75 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.08 -9.03 -42.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592695763.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.452 kcal (2) G-P(sol) polarization free energy of solvation -33.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds