Wall clock time and date at job start Tue Mar 31 2020 22:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.67978 * 2 1 4 4 C 1.53290 * 109.67884 * 239.48117 * 2 1 3 5 5 H 1.08992 * 109.51629 * 307.91278 * 4 2 1 6 6 C 1.50701 * 109.51167 * 68.01844 * 4 2 1 7 7 C 1.38270 * 119.98949 * 84.72430 * 6 4 2 8 8 C 1.38222 * 120.05200 * 180.28245 * 7 6 4 9 9 C 1.38212 * 120.02429 * 359.97438 * 8 7 6 10 10 C 1.38441 * 119.97963 * 0.02562 * 9 8 7 11 11 F 1.35097 * 120.02716 * 180.02562 * 10 9 8 12 12 C 1.38179 * 119.98624 * 264.99676 * 6 4 2 13 13 O 1.42964 * 109.22194 * 187.93945 * 4 2 1 14 14 C 1.42954 * 114.16758 * 62.58097 * 13 4 2 15 15 C 1.53301 * 109.22718 * 297.42090 * 14 13 4 16 16 N 1.47148 * 108.37925 * 52.29757 * 15 14 13 17 17 C 1.34782 * 120.98011 * 129.49025 * 16 15 14 18 18 O 1.21277 * 120.00322 * 184.78783 * 17 16 15 19 19 C 1.50701 * 119.99624 * 4.78591 * 17 16 15 20 20 S 1.81002 * 109.46788 * 179.97438 * 19 17 16 21 21 C 1.76201 * 100.00032 * 179.97438 * 20 19 17 22 22 H 1.08004 * 120.00095 * 359.97438 * 21 20 19 23 23 C 1.38795 * 120.00093 * 180.02562 * 21 20 19 24 24 N 1.31631 * 120.00076 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00149 * 180.02562 * 23 21 20 26 26 H 1.48508 * 109.46973 * 59.99429 * 25 23 21 27 27 H 1.48497 * 109.47429 * 179.97438 * 25 23 21 28 28 H 1.48508 * 109.46957 * 299.99593 * 25 23 21 29 29 H 1.09000 * 109.47337 * 186.35910 * 1 2 3 30 30 H 1.09009 * 109.46948 * 306.35952 * 1 2 3 31 31 H 1.09001 * 109.47180 * 66.35448 * 1 2 3 32 32 H 1.08003 * 119.97333 * 0.24899 * 7 6 4 33 33 H 1.08000 * 119.98670 * 179.97438 * 8 7 6 34 34 H 1.08004 * 120.01281 * 179.97438 * 9 8 7 35 35 H 1.08001 * 120.00856 * 359.69871 * 12 6 4 36 36 H 1.09010 * 109.51457 * 177.49499 * 14 13 4 37 37 H 1.09002 * 109.55268 * 57.37263 * 14 13 4 38 38 H 1.09006 * 109.67859 * 292.58187 * 15 14 13 39 39 H 1.08992 * 109.71157 * 172.04038 * 15 14 13 40 40 H 1.08999 * 109.47016 * 299.99702 * 19 17 16 41 41 H 1.08998 * 109.47508 * 60.00408 * 19 17 16 42 42 H 0.97000 * 119.99792 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0263 0.0000 4 6 2.0462 -0.7330 -1.2434 5 1 1.5744 -1.7132 -1.3103 6 6 1.7150 0.0701 -2.4748 7 6 2.5565 1.0888 -2.8826 8 6 2.2510 1.8300 -4.0085 9 6 1.1041 1.5534 -4.7285 10 6 0.2608 0.5338 -4.3212 11 9 -0.8603 0.2622 -5.0245 12 6 0.5677 -0.2080 -3.1929 13 8 3.4636 -0.8900 -1.1426 14 6 3.8867 -1.6883 -0.0348 15 6 3.4647 -1.0043 1.2706 16 7 2.0263 -0.7039 1.1931 17 6 1.1882 -1.0625 2.1859 18 8 -0.0054 -0.8844 2.0659 19 6 1.7344 -1.6848 3.4451 20 16 0.3707 -2.0506 4.5777 21 6 1.2692 -2.7492 5.9228 22 1 2.3442 -2.8371 5.8665 23 6 0.5955 -3.1874 7.0544 24 7 -0.7147 -3.0808 7.1229 25 14 1.5481 -3.9274 8.4807 26 1 2.5137 -2.9272 9.0029 27 1 0.6036 -4.3132 9.5597 28 1 2.2845 -5.1295 8.0136 29 1 -0.3634 -1.0213 0.1138 30 1 -0.3633 0.6093 0.8277 31 1 -0.3633 0.4122 -0.9414 32 1 3.4529 1.3057 -2.3205 33 1 2.9088 2.6257 -4.3258 34 1 0.8653 2.1330 -5.6080 35 1 -0.0891 -1.0040 -2.8744 36 1 4.9714 -1.7948 -0.0559 37 1 3.4230 -2.6729 -0.0964 38 1 4.0266 -0.0791 1.3985 39 1 3.6560 -1.6694 2.1127 40 1 2.2583 -2.6077 3.1966 41 1 2.4265 -0.9912 3.9225 42 1 -1.1855 -3.3868 7.9138 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592695763.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:34 Heat of formation + Delta-G solvation = -99.372288 kcal Electronic energy + Delta-G solvation = -26867.474186 eV Core-core repulsion = 22853.255110 eV Total energy + Delta-G solvation = -4014.219077 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 3.90 seconds Orbital eigenvalues (eV) -49.91480 -41.90422 -40.23040 -39.01917 -35.92206 -34.97946 -34.58811 -32.09477 -31.52724 -30.56634 -29.17852 -27.64553 -27.36022 -24.21749 -23.98493 -23.59467 -22.10912 -20.59391 -19.50450 -18.59080 -18.10243 -17.54544 -17.43041 -17.11085 -17.01416 -16.88150 -16.60231 -16.56580 -16.07899 -15.96875 -15.67848 -14.97560 -14.86326 -14.69303 -14.47702 -14.19924 -13.95604 -13.65305 -13.44572 -13.30995 -13.13506 -13.09250 -12.88284 -12.82501 -12.68850 -12.62289 -12.32531 -12.02785 -11.82055 -11.74410 -11.29477 -11.13147 -10.27457 -10.23075 -10.07012 -9.72811 -9.48712 -8.67564 -8.35024 -6.13228 0.10255 0.20021 1.22685 1.43556 1.43845 1.53478 1.53852 1.95569 2.26933 2.42495 2.62525 2.99250 3.21756 3.31579 3.53288 3.58678 3.68420 3.78993 3.89225 3.99043 4.08207 4.12934 4.18987 4.25232 4.27327 4.30417 4.41442 4.44477 4.46577 4.69558 4.75707 4.84231 4.85121 4.99554 5.07814 5.13422 5.22468 5.36238 5.41021 5.43095 5.51050 5.89987 6.01697 6.18492 6.21373 7.06276 7.11027 8.73823 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.025161 B = 0.002408 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.558010 B =11626.614526 C =12395.438270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.128 3.872 3 H 0.090 0.910 4 C 0.132 3.868 5 H 0.065 0.935 6 C -0.061 4.061 7 C -0.102 4.102 8 C -0.086 4.086 9 C -0.148 4.148 10 C 0.077 3.923 11 F -0.150 7.150 12 C -0.150 4.150 13 O -0.372 6.372 14 C 0.049 3.951 15 C 0.065 3.935 16 N -0.613 5.613 17 C 0.534 3.466 18 O -0.545 6.545 19 C -0.125 4.125 20 S -0.150 6.150 21 C -0.545 4.545 22 H 0.084 0.916 23 C 0.013 3.987 24 N -0.912 5.912 25 Si 0.997 3.003 26 H -0.262 1.262 27 H -0.280 1.280 28 H -0.261 1.261 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.147 0.853 33 H 0.167 0.833 34 H 0.156 0.844 35 H 0.132 0.868 36 H 0.145 0.855 37 H 0.054 0.946 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.615 8.450 -23.094 28.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.025 3.975 3 H 0.108 0.892 4 C 0.073 3.927 5 H 0.083 0.917 6 C -0.062 4.062 7 C -0.120 4.120 8 C -0.104 4.104 9 C -0.167 4.167 10 C 0.058 3.942 11 F -0.129 7.129 12 C -0.169 4.169 13 O -0.291 6.291 14 C -0.028 4.028 15 C -0.057 4.057 16 N -0.349 5.349 17 C 0.322 3.678 18 O -0.422 6.422 19 C -0.276 4.276 20 S 0.078 5.922 21 C -0.693 4.693 22 H 0.102 0.898 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.819 3.181 26 H -0.186 1.186 27 H -0.206 1.206 28 H -0.186 1.186 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.165 0.835 33 H 0.184 0.816 34 H 0.173 0.827 35 H 0.150 0.850 36 H 0.162 0.838 37 H 0.073 0.927 38 H 0.116 0.884 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.785 8.756 -23.327 27.563 hybrid contribution 0.728 -1.031 1.326 1.831 sum 12.514 7.724 -22.001 26.463 Atomic orbital electron populations 1.21996 0.92957 1.02638 1.00953 1.21898 0.95810 0.96199 0.83637 0.89199 1.21093 0.82960 0.97388 0.91255 0.91684 1.19209 0.94805 0.97096 0.95045 1.21308 0.99601 0.93972 0.97134 1.21394 0.95914 0.99403 0.93651 1.21508 0.95284 0.97365 1.02509 1.17823 0.85073 0.98625 0.92674 1.91482 1.50085 1.93443 1.77860 1.20984 0.98855 1.01806 0.95276 1.87932 1.20055 1.72386 1.48689 1.23208 1.02836 0.93008 0.83713 1.22796 0.79069 1.03138 1.00741 1.48217 1.09216 1.58796 1.18642 1.20141 0.86125 0.77514 0.84023 1.90758 1.16873 1.54537 1.80042 1.23418 1.03513 1.04245 0.96464 1.85585 1.11418 1.80408 1.14837 1.23159 0.95869 1.46999 1.03287 0.89827 1.26126 0.96050 0.95684 1.01301 1.70178 1.08848 1.45605 1.30189 0.85018 0.77818 0.78865 0.76395 1.18607 1.20557 1.18562 0.93146 0.92747 0.91832 0.83534 0.81579 0.82658 0.84987 0.83765 0.92715 0.88414 0.87545 0.87394 0.87520 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.72 7.48 71.98 0.54 -3.18 16 2 C 0.13 3.08 3.11 44.96 0.14 3.22 16 3 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 4 C 0.13 2.70 2.45 29.95 0.07 2.77 16 5 H 0.07 1.47 8.05 -2.39 -0.02 1.45 16 6 C -0.06 -1.13 4.53 -19.87 -0.09 -1.22 16 7 C -0.10 -1.50 9.35 22.27 0.21 -1.29 16 8 C -0.09 -0.99 10.04 22.26 0.22 -0.76 16 9 C -0.15 -2.06 10.03 22.31 0.22 -1.84 16 10 C 0.08 1.47 7.30 22.38 0.16 1.63 16 11 F -0.15 -3.25 17.27 44.97 0.78 -2.47 16 12 C -0.15 -2.97 8.27 22.31 0.18 -2.79 16 13 O -0.37 -6.69 9.53 -148.98 -1.42 -8.11 16 14 C 0.05 0.71 6.98 72.08 0.50 1.22 16 15 C 0.06 1.14 6.52 86.36 0.56 1.70 16 16 N -0.61 -16.20 3.02 -793.53 -2.40 -18.59 16 17 C 0.53 19.44 7.62 87.66 0.67 20.11 16 18 O -0.54 -24.10 11.42 -3.02 -0.03 -24.13 16 19 C -0.13 -4.83 4.60 71.24 0.33 -4.51 16 20 S -0.15 -8.18 20.57 -56.49 -1.16 -9.34 16 21 C -0.55 -30.60 9.50 67.95 0.65 -29.95 16 22 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 23 C 0.01 0.74 5.49 84.86 0.47 1.21 16 24 N -0.91 -55.69 13.22 21.65 0.29 -55.40 16 25 Si 1.00 42.95 29.55 68.60 2.03 44.98 16 26 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 27 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 28 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 29 H 0.05 1.70 6.81 -2.39 -0.02 1.68 16 30 H 0.05 1.87 6.77 -2.38 -0.02 1.85 16 31 H 0.06 1.57 6.31 -2.39 -0.02 1.56 16 32 H 0.15 1.82 7.63 -2.91 -0.02 1.80 16 33 H 0.17 0.83 8.06 -2.91 -0.02 0.81 16 34 H 0.16 1.46 8.06 -2.91 -0.02 1.43 16 35 H 0.13 2.63 8.06 -2.91 -0.02 2.61 16 36 H 0.14 1.15 8.14 -2.38 -0.02 1.14 16 37 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.11 1.78 6.07 -2.39 -0.01 1.76 16 40 H 0.11 3.71 7.46 -2.40 -0.02 3.69 16 41 H 0.11 3.74 8.14 -2.40 -0.02 3.72 16 42 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -75.08 359.30 3.96 -71.12 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 1.04 Total: 15.64 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: 4.84 Total: -13.69 kcal Atomic # 7 Polarization: -71.88 SS G_CDS: -2.11 Total: -73.99 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -1.45 Total: -32.24 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.78 Total: -2.47 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: -8.18 SS G_CDS: -1.16 Total: -9.34 kcal Total: -75.08 3.96 -71.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592695763.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.250 kcal (2) G-P(sol) polarization free energy of solvation -75.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.90 seconds