Wall clock time and date at job start Tue Mar 31 2020 23:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46903 * 111.00277 * 2 1 4 4 C 1.38525 * 111.00007 * 123.95357 * 2 1 3 5 5 N 1.32587 * 119.54734 * 295.49001 * 4 2 1 6 6 C 1.31623 * 121.78383 * 180.02562 * 5 4 2 7 7 C 1.39560 * 120.67151 * 359.97438 * 6 5 4 8 8 C 1.47543 * 120.48049 * 180.02562 * 7 6 5 9 9 O 1.21600 * 119.99390 * 25.34638 * 8 7 6 10 10 N 1.34769 * 120.00762 * 205.33941 * 8 7 6 11 11 C 1.47428 * 125.64563 * 356.68088 * 10 8 7 12 12 C 1.55128 * 104.72334 * 155.81404 * 11 10 8 13 13 C 1.55157 * 101.48533 * 37.29565 * 12 11 10 14 14 O 1.42900 * 110.71750 * 82.69516 * 13 12 11 15 15 C 1.50697 * 110.87530 * 205.89551 * 13 12 11 16 16 H 1.08001 * 119.99698 * 117.15504 * 15 13 12 17 17 C 1.37881 * 120.00057 * 297.16183 * 15 13 12 18 18 N 1.31513 * 119.99814 * 182.94739 * 17 15 13 19 19 Si 1.86797 * 119.99826 * 2.94069 * 17 15 13 20 20 H 1.48500 * 109.47012 * 91.18173 * 19 17 15 21 21 H 1.48503 * 109.46732 * 211.17578 * 19 17 15 22 22 H 1.48490 * 109.47215 * 331.17834 * 19 17 15 23 23 C 1.47021 * 125.65406 * 176.98751 * 10 8 7 24 24 C 1.40345 * 119.05059 * 0.02728 * 7 6 5 25 25 C 1.37960 * 118.36538 * 359.97438 * 24 7 6 26 26 Cl 1.73594 * 120.38684 * 180.02562 * 25 24 7 27 27 H 1.09003 * 109.46807 * 296.04900 * 1 2 3 28 28 H 1.08994 * 109.47274 * 56.04339 * 1 2 3 29 29 H 1.08993 * 109.47437 * 176.04857 * 1 2 3 30 30 H 1.08998 * 109.47435 * 188.44040 * 3 2 1 31 31 H 1.08996 * 109.46941 * 308.43806 * 3 2 1 32 32 H 1.08998 * 109.47163 * 68.43568 * 3 2 1 33 33 H 1.08003 * 119.66670 * 179.97438 * 6 5 4 34 34 H 1.08999 * 110.36762 * 274.74751 * 11 10 8 35 35 H 1.09000 * 110.36618 * 37.07028 * 11 10 8 36 36 H 1.09003 * 111.19421 * 279.19540 * 12 11 10 37 37 H 1.08998 * 110.93913 * 155.29025 * 12 11 10 38 38 H 0.96708 * 114.00056 * 185.02364 * 14 13 12 39 39 H 0.97000 * 120.00183 * 179.97438 * 18 17 15 40 40 H 1.09004 * 109.88277 * 300.44418 * 23 10 8 41 41 H 1.09003 * 109.88003 * 61.45371 * 23 10 8 42 42 H 1.07996 * 120.82273 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9654 -0.7223 1.0727 5 7 1.7363 -0.2990 2.3081 6 6 2.1874 -0.9504 3.3591 7 6 2.9299 -2.1221 3.2057 8 6 3.4331 -2.8494 4.3867 9 8 2.8639 -2.7403 5.4558 10 7 4.5232 -3.6346 4.2808 11 6 5.2655 -3.9109 3.0373 12 6 6.6928 -4.2960 3.5074 13 6 6.3863 -5.1018 4.7974 14 8 6.0537 -6.4551 4.4811 15 6 7.5510 -5.0503 5.7522 16 1 7.4338 -4.5908 6.7226 17 6 8.7663 -5.5896 5.3870 18 7 9.7660 -5.5966 6.2415 19 14 8.9925 -6.3104 3.6786 20 1 9.4929 -5.2570 2.7592 21 1 9.9740 -7.4234 3.7370 22 1 7.6909 -6.8238 3.1816 23 6 5.1656 -4.3626 5.3848 24 6 3.1912 -2.5989 1.9118 25 6 2.6995 -1.8850 0.8385 26 17 2.9909 -2.4274 -0.7845 27 1 -0.3633 0.4513 0.9233 28 1 -0.3633 0.5740 -0.8524 29 1 -0.3634 -1.0251 -0.0708 30 1 3.0747 1.3463 -0.1508 31 1 1.5293 1.9396 -0.8049 32 1 1.7731 1.8460 0.9557 33 1 1.9809 -0.5745 4.3503 34 1 4.8055 -4.7381 2.4967 35 1 5.3006 -3.0198 2.4105 36 1 7.2862 -3.4097 3.7322 37 1 7.1919 -4.9201 2.7662 38 1 5.7791 -6.9814 5.2445 39 1 10.6208 -5.9764 5.9847 40 1 5.4914 -3.6602 6.1521 41 1 4.4654 -5.0801 5.8126 42 1 3.7631 -3.5023 1.7599 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594375116.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:08 Heat of formation + Delta-G solvation = -8.998354 kcal Electronic energy + Delta-G solvation = -27495.767060 eV Core-core repulsion = 23503.343147 eV Total energy + Delta-G solvation = -3992.423913 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.20109 -39.71961 -37.81529 -37.00626 -36.73651 -34.86747 -32.81542 -32.48171 -31.01758 -30.23721 -28.55057 -27.97467 -26.28450 -25.26914 -23.76968 -23.22539 -21.86968 -20.30383 -19.69100 -17.83493 -17.57389 -17.46377 -16.99539 -15.94389 -15.72998 -15.44400 -15.18679 -14.91283 -14.83653 -14.41937 -14.16320 -13.93421 -13.54131 -13.40760 -13.26185 -12.94703 -12.66419 -12.51368 -12.39872 -12.28206 -12.15504 -12.04812 -11.66194 -11.44551 -11.34808 -11.28158 -10.70672 -10.45794 -10.37266 -10.17898 -10.06244 -9.67957 -9.14917 -9.08738 -9.05826 -8.81951 -8.59953 -8.36624 -6.28401 -4.41491 0.23510 0.69521 1.80693 2.65249 3.02981 3.19753 3.23604 3.36734 3.42850 3.54171 4.06700 4.29745 4.34982 4.46035 4.54290 4.82076 4.88650 4.96390 5.00384 5.02765 5.15600 5.22030 5.25220 5.32577 5.41381 5.51494 5.55383 5.56804 5.58696 5.69595 5.87267 5.94244 6.31796 6.33983 6.39684 6.48675 6.53048 6.72850 7.00453 7.34283 7.37458 7.66551 8.11171 8.18962 8.64949 8.80062 9.33699 10.81809 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018595 B = 0.003193 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.430643 B = 8766.010000 C = 9612.686273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.492 5.492 3 C 0.027 3.973 4 C 0.317 3.683 5 N -0.499 5.499 6 C 0.171 3.829 7 C -0.163 4.163 8 C 0.572 3.428 9 O -0.538 6.538 10 N -0.598 5.598 11 C 0.088 3.912 12 C -0.126 4.126 13 C 0.217 3.783 14 O -0.572 6.572 15 C -0.553 4.553 16 H 0.079 0.921 17 C 0.089 3.911 18 N -0.885 5.885 19 Si 0.870 3.130 20 H -0.285 1.285 21 H -0.298 1.298 22 H -0.221 1.221 23 C 0.095 3.905 24 C -0.048 4.048 25 C -0.067 4.067 26 Cl -0.033 7.033 27 H 0.044 0.956 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.175 0.825 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.366 0.634 39 H 0.268 0.732 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.247 9.305 -14.198 22.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.214 5.214 3 C -0.119 4.119 4 C 0.087 3.913 5 N -0.211 5.211 6 C 0.011 3.989 7 C -0.169 4.169 8 C 0.359 3.641 9 O -0.417 6.417 10 N -0.330 5.330 11 C -0.035 4.035 12 C -0.164 4.164 13 C 0.177 3.823 14 O -0.379 6.379 15 C -0.590 4.590 16 H 0.097 0.903 17 C -0.116 4.116 18 N -0.521 5.521 19 Si 0.698 3.302 20 H -0.211 1.211 21 H -0.225 1.225 22 H -0.144 1.144 23 C -0.026 4.026 24 C -0.075 4.075 25 C -0.097 4.097 26 Cl -0.004 7.004 27 H 0.063 0.937 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.192 0.808 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.213 0.787 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -15.590 10.060 -14.658 23.645 hybrid contribution 0.524 -0.917 0.180 1.072 sum -15.066 9.142 -14.477 22.807 Atomic orbital electron populations 1.22427 0.84530 1.02937 1.01872 1.60061 1.09749 1.15555 1.36074 1.22439 1.01028 0.86595 1.01878 1.19791 0.92525 0.90897 0.88047 1.67957 1.21562 1.32791 0.98796 1.22845 0.89107 0.89145 0.97776 1.21033 1.03170 0.99018 0.93669 1.17434 0.79970 0.79266 0.87401 1.90804 1.57569 1.64676 1.28637 1.48472 1.27101 1.45794 1.11610 1.22868 0.93908 0.99775 0.86935 1.23196 0.93843 1.00989 0.98385 1.19971 0.90780 0.79794 0.91748 1.86529 1.89170 1.23778 1.38390 1.21167 0.93717 1.41476 1.02656 0.90276 1.24952 0.95321 0.93725 0.97641 1.69924 1.03031 1.43711 1.35415 0.87133 0.79581 0.78963 0.84536 1.21138 1.22490 1.14410 1.22922 0.94871 0.95788 0.89062 1.22417 0.95108 0.99905 0.90046 1.21538 1.02956 0.96939 0.88305 1.98385 1.94503 1.88762 1.18714 0.93725 0.90249 0.91198 0.91110 0.90370 0.93476 0.80784 0.90686 0.90887 0.89071 0.90285 0.78667 0.92267 0.90329 0.91824 0.81526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.46 60.06 0.57 0.80 16 2 N -0.49 -4.82 4.37 -188.97 -0.83 -5.64 16 3 C 0.03 0.23 9.52 60.07 0.57 0.80 16 4 C 0.32 3.67 5.33 -155.19 -0.83 2.85 16 5 N -0.50 -6.12 9.39 -12.12 -0.11 -6.23 16 6 C 0.17 2.17 10.75 -17.15 -0.18 1.99 16 7 C -0.16 -2.23 5.74 -104.82 -0.60 -2.83 16 8 C 0.57 9.55 7.66 -12.47 -0.10 9.45 16 9 O -0.54 -10.46 16.96 5.28 0.09 -10.37 16 10 N -0.60 -10.18 3.32 -171.60 -0.57 -10.75 16 11 C 0.09 1.33 5.01 -2.41 -0.01 1.32 16 12 C -0.13 -2.36 4.93 -24.46 -0.12 -2.48 16 13 C 0.22 4.52 0.67 -89.94 -0.06 4.46 16 14 O -0.57 -11.52 10.22 -35.23 -0.36 -11.88 16 15 C -0.55 -14.06 8.82 -34.44 -0.30 -14.37 16 16 H 0.08 2.21 7.81 -52.49 -0.41 1.80 16 17 C 0.09 2.38 5.47 -17.82 -0.10 2.29 16 18 N -0.89 -25.50 13.96 55.43 0.77 -24.73 16 19 Si 0.87 20.09 24.19 -169.99 -4.11 15.98 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.30 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.22 -4.88 5.11 56.52 0.29 -4.59 16 23 C 0.10 1.83 6.21 -3.07 -0.02 1.81 16 24 C -0.05 -0.58 7.85 -38.89 -0.31 -0.89 16 25 C -0.07 -0.78 6.35 -39.22 -0.25 -1.03 16 26 Cl -0.03 -0.35 28.46 -51.86 -1.48 -1.82 16 27 H 0.04 0.38 7.91 -51.93 -0.41 -0.03 16 28 H 0.08 0.48 8.07 -51.93 -0.42 0.06 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.48 8.04 -51.93 -0.42 0.06 16 32 H 0.05 0.42 7.68 -51.93 -0.40 0.02 16 33 H 0.18 2.05 7.85 -52.48 -0.41 1.64 16 34 H 0.08 1.05 7.32 -51.93 -0.38 0.67 16 35 H 0.07 0.95 6.08 -51.93 -0.32 0.63 16 36 H 0.09 1.74 8.05 -51.93 -0.42 1.32 16 37 H 0.08 1.50 5.02 -51.93 -0.26 1.23 16 38 H 0.37 6.43 9.08 45.56 0.41 6.84 16 39 H 0.27 7.27 8.31 -40.82 -0.34 6.94 16 40 H 0.08 1.62 7.65 -51.93 -0.40 1.22 16 41 H 0.06 1.19 8.06 -51.93 -0.42 0.77 16 42 H 0.17 1.90 4.50 -52.49 -0.24 1.66 16 LS Contribution 351.69 15.07 5.30 5.30 Total: -1.00 -30.53 351.69 -7.60 -38.14 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -4.57 Total: 7.85 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -1.74 Total: 4.16 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: -0.74 Total: -47.36 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.27 Total: -22.25 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.11 Total: 15.98 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.48 Total: -1.82 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.53 -7.60 -38.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594375116.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.137 kcal (2) G-P(sol) polarization free energy of solvation -30.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds