Wall clock time and date at job start Tue Mar 31 2020 23:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42895 * 109.47501 * 2 1 4 4 C 1.35791 * 117.00169 * 179.97438 * 3 2 1 5 5 C 1.38851 * 119.92433 * 0.27688 * 4 3 2 6 6 C 1.37765 * 120.15212 * 180.27529 * 5 4 3 7 7 N 1.48019 * 119.99721 * 179.74701 * 6 5 4 8 8 O 1.21809 * 120.00328 * 51.37582 * 7 6 5 9 9 O 1.21805 * 120.00077 * 231.37675 * 7 6 5 10 10 C 1.39759 * 120.00029 * 359.72271 * 6 5 4 11 11 C 1.47470 * 120.07451 * 180.02562 * 10 6 5 12 12 O 1.21511 * 120.00102 * 6.47365 * 11 10 6 13 13 O 1.34753 * 120.00205 * 186.46610 * 11 10 6 14 14 C 1.45202 * 117.00251 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.47163 * 30.00571 * 14 13 11 16 16 C 1.52998 * 109.46796 * 270.00341 * 14 13 11 17 17 C 1.50693 * 109.47011 * 150.00385 * 14 13 11 18 18 H 1.08006 * 120.00044 * 33.67465 * 17 14 13 19 19 C 1.37879 * 120.00294 * 213.67131 * 17 14 13 20 20 N 1.31510 * 120.00238 * 184.65750 * 19 17 14 21 21 Si 1.86803 * 119.99467 * 4.65899 * 19 17 14 22 22 H 1.48498 * 109.46941 * 84.84369 * 21 19 17 23 23 H 1.48500 * 109.47021 * 204.83973 * 21 19 17 24 24 H 1.48492 * 109.47153 * 324.84514 * 21 19 17 25 25 C 1.39788 * 119.84985 * 359.97438 * 10 6 5 26 26 C 1.38124 * 119.84302 * 0.02562 * 25 10 6 27 27 O 1.36007 * 119.99435 * 179.97438 * 26 25 10 28 28 C 1.42895 * 117.00416 * 359.97438 * 27 26 25 29 29 H 1.09003 * 109.46967 * 300.00347 * 1 2 3 30 30 H 1.08998 * 109.46718 * 59.99884 * 1 2 3 31 31 H 1.08994 * 109.47435 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47437 * 239.99894 * 2 1 3 33 33 H 1.08999 * 109.47145 * 119.99797 * 2 1 3 34 34 H 1.07995 * 119.92138 * 0.02562 * 5 4 3 35 35 H 1.09005 * 109.47355 * 65.04391 * 16 14 13 36 36 H 1.09005 * 109.46940 * 185.03676 * 16 14 13 37 37 H 1.09000 * 109.47624 * 305.03541 * 16 14 13 38 38 H 0.96996 * 119.99855 * 180.02562 * 20 19 17 39 39 H 1.07998 * 120.07963 * 180.02562 * 25 10 6 40 40 H 1.09002 * 109.47122 * 179.97438 * 28 27 26 41 41 H 1.09003 * 109.46830 * 60.00423 * 28 27 26 42 42 H 1.08997 * 109.47486 * 300.00169 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3526 1.5251 0.0005 5 6 4.1969 0.4228 -0.0048 6 6 5.5634 0.5978 0.0015 7 7 6.4603 -0.5798 0.0015 8 8 6.3090 -1.4607 -0.8261 9 8 7.3497 -0.6679 0.8290 10 6 6.1028 1.8871 0.0073 11 6 7.5653 2.0763 0.0135 12 8 8.3025 1.1176 -0.1052 13 8 8.0842 3.3123 0.1505 14 6 9.5320 3.4236 0.1472 15 1 9.9561 2.6290 -0.4667 16 6 10.0564 3.2970 1.5789 17 6 9.9316 4.7623 -0.4177 18 1 9.3099 5.6285 -0.2453 19 6 11.0909 4.8814 -1.1545 20 7 11.4875 6.0646 -1.5696 21 14 12.0981 3.3622 -1.5630 22 1 11.5518 2.7202 -2.7855 23 1 13.5110 3.7537 -1.7988 24 1 12.0321 2.4050 -0.4296 25 6 5.2528 2.9969 0.0063 26 6 3.8838 2.8141 0.0000 27 8 3.0540 3.8917 -0.0005 28 6 3.6668 5.1825 0.0062 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7814 -0.5740 -0.0097 35 1 9.8456 2.2962 1.9560 36 1 11.1327 3.4695 1.5882 37 1 9.5647 4.0351 2.2126 38 1 12.3029 6.1483 -2.0883 39 1 5.6657 3.9948 0.0103 40 1 2.8943 5.9515 0.0045 41 1 4.2908 5.2930 -0.8807 42 1 4.2827 5.2877 0.8993 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733709605.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:18 Heat of formation + Delta-G solvation = -125.692119 kcal Electronic energy + Delta-G solvation = -30186.073044 eV Core-core repulsion = 25715.586993 eV Total energy + Delta-G solvation = -4470.486051 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.13273 -41.04962 -39.77915 -39.12782 -37.38305 -36.30500 -35.86901 -33.24011 -32.58903 -31.68692 -30.84930 -30.25951 -28.05008 -26.30900 -25.47069 -24.84425 -23.61238 -22.20703 -21.69925 -20.17460 -19.67191 -18.63668 -18.53785 -18.01399 -17.55912 -16.98815 -16.86876 -16.65390 -16.25065 -15.95674 -15.83221 -15.37688 -15.01288 -14.53548 -14.00673 -13.83072 -13.71648 -13.24925 -12.96358 -12.89982 -12.79057 -12.54290 -12.45467 -11.94626 -11.92353 -11.86772 -11.59737 -11.33622 -11.28571 -11.21570 -11.07840 -10.97365 -10.84907 -10.75726 -10.13392 -9.88986 -9.66958 -9.56029 -9.23421 -8.80186 -8.58992 -6.36403 -4.41396 -0.10375 0.32815 1.08025 1.41935 2.44198 2.47798 2.67268 2.99347 3.20168 3.25424 3.26400 3.33533 3.97229 4.20517 4.21224 4.29142 4.41321 4.47120 4.58842 4.72806 4.87607 4.88389 4.91434 4.96722 5.01399 5.17779 5.28386 5.30791 5.38793 5.50800 5.58518 5.72300 6.08661 6.40071 6.41544 6.42431 6.48971 6.59709 6.88008 7.07254 7.15573 7.38670 7.83306 8.03542 8.38526 8.70558 9.22082 10.74349 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014310 B = 0.003581 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.167965 B = 7816.836358 C = 9250.403961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.044 3.956 3 O -0.289 6.289 4 C 0.137 3.863 5 C -0.139 4.139 6 C 0.019 3.981 7 N 0.024 4.976 8 O -0.175 6.175 9 O -0.085 6.085 10 C -0.055 4.055 11 C 0.485 3.515 12 O -0.490 6.490 13 O -0.337 6.337 14 C 0.184 3.816 15 H 0.049 0.951 16 C -0.155 4.155 17 C -0.521 4.521 18 H 0.086 0.914 19 C 0.085 3.915 20 N -0.879 5.879 21 Si 0.867 3.133 22 H -0.270 1.270 23 H -0.280 1.280 24 H -0.257 1.257 25 C -0.113 4.113 26 C 0.132 3.868 27 O -0.294 6.294 28 C 0.015 3.985 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.161 0.839 35 H 0.035 0.965 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.272 0.728 39 H 0.177 0.823 40 H 0.109 0.891 41 H 0.067 0.933 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.927 -7.579 4.164 23.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.031 4.031 3 O -0.202 6.202 4 C 0.089 3.911 5 C -0.159 4.159 6 C -0.063 4.063 7 N 0.553 4.447 8 O -0.384 6.384 9 O -0.320 6.320 10 C -0.058 4.058 11 C 0.327 3.673 12 O -0.379 6.379 13 O -0.253 6.253 14 C 0.132 3.868 15 H 0.067 0.933 16 C -0.213 4.213 17 C -0.558 4.558 18 H 0.104 0.896 19 C -0.121 4.121 20 N -0.515 5.515 21 Si 0.692 3.308 22 H -0.195 1.195 23 H -0.205 1.205 24 H -0.182 1.182 25 C -0.132 4.132 26 C 0.085 3.915 27 O -0.207 6.207 28 C -0.080 4.080 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.178 0.822 35 H 0.054 0.946 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.195 0.805 40 H 0.127 0.873 41 H 0.086 0.914 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -22.414 -6.983 3.928 23.803 hybrid contribution 1.257 -1.101 -0.364 1.710 sum -21.158 -8.084 3.564 22.928 Atomic orbital electron populations 1.21763 0.91889 1.03188 1.03897 1.23030 0.96754 0.81275 1.02027 1.86212 1.16368 1.29809 1.87819 1.17963 0.83665 0.90039 0.99418 1.20484 0.89995 1.00062 1.05311 1.20517 0.89887 0.85309 1.10575 1.43150 1.00490 1.01075 1.00018 1.94515 1.77277 1.33060 1.33552 1.94603 1.22846 1.82784 1.31747 1.18876 0.93104 0.90462 1.03325 1.20685 0.87575 0.84039 0.75025 1.90952 1.61104 1.41232 1.44658 1.86701 1.30536 1.27339 1.80766 1.21125 0.71743 0.98889 0.95065 0.93279 1.22261 1.01729 0.99469 0.97813 1.20740 1.08341 0.92407 1.34351 0.89605 1.24882 0.97025 0.96254 0.93903 1.69837 1.23609 1.22675 1.35377 0.86992 0.79839 0.83508 0.80437 1.19514 1.20533 1.18163 1.21525 0.90192 1.00713 1.00804 1.18292 0.88733 0.86148 0.98363 1.86213 1.33380 1.13359 1.87701 1.23355 1.00611 0.81183 1.02810 0.91252 0.91182 0.89994 0.91247 0.91523 0.82154 0.94599 0.91451 0.92559 0.91825 0.80545 0.87280 0.91412 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 10.28 37.16 0.38 -0.36 16 2 C 0.04 0.30 5.46 37.16 0.20 0.50 16 3 O -0.29 -2.93 9.90 -33.74 -0.33 -3.26 16 4 C 0.14 1.57 6.71 -38.92 -0.26 1.31 16 5 C -0.14 -1.65 8.80 -39.53 -0.35 -2.00 16 6 C 0.02 0.30 6.31 -79.55 -0.50 -0.20 16 7 N 0.02 0.43 3.58 34.16 0.12 0.55 16 8 O -0.17 -3.17 19.14 -29.46 -0.56 -3.74 16 9 O -0.08 -1.71 16.12 -37.24 -0.60 -2.31 16 10 C -0.05 -0.91 5.87 -104.99 -0.62 -1.53 16 11 C 0.48 10.14 7.73 34.49 0.27 10.41 16 12 O -0.49 -11.56 12.24 -27.45 -0.34 -11.90 16 13 O -0.34 -7.50 9.13 -40.64 -0.37 -7.87 16 14 C 0.18 4.54 2.18 -27.89 -0.06 4.48 16 15 H 0.05 1.29 4.40 -51.93 -0.23 1.06 16 16 C -0.15 -3.41 9.53 37.16 0.35 -3.05 16 17 C -0.52 -14.32 9.25 -34.44 -0.32 -14.64 16 18 H 0.09 2.50 8.06 -52.48 -0.42 2.08 16 19 C 0.08 2.36 5.47 -17.82 -0.10 2.26 16 20 N -0.88 -25.55 13.96 55.43 0.77 -24.77 16 21 Si 0.87 21.32 26.96 -169.99 -4.58 16.74 16 22 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.26 -6.22 6.85 56.52 0.39 -5.83 16 25 C -0.11 -1.51 8.60 -39.04 -0.34 -1.85 16 26 C 0.13 1.58 6.69 -39.19 -0.26 1.32 16 27 O -0.29 -3.20 10.28 -34.42 -0.35 -3.55 16 28 C 0.01 0.12 9.81 101.05 0.99 1.11 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.41 7.64 -51.93 -0.40 0.01 16 33 H 0.07 0.38 7.66 -51.93 -0.40 -0.02 16 34 H 0.16 1.50 6.27 -52.49 -0.33 1.17 16 35 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.47 8.13 -51.93 -0.42 1.04 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.18 2.20 5.85 -52.49 -0.31 1.89 16 40 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.53 7.66 -51.93 -0.40 0.13 16 42 H 0.07 0.50 7.66 -51.93 -0.40 0.10 16 LS Contribution 365.56 15.07 5.51 5.51 Total: -1.00 -33.49 365.56 -6.33 -39.82 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -4.99 Total: -2.96 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -0.60 Total: -2.25 kcal Atomic # 7 Polarization: -25.12 SS G_CDS: 0.90 Total: -24.22 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -2.56 Total: -32.63 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.58 Total: 16.74 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.49 -6.33 -39.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709605.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.876 kcal (2) G-P(sol) polarization free energy of solvation -33.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds