Wall clock time and date at job start Tue Mar 31 2020 23:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42895 * 109.47501 * 2 1 4 4 C 1.35791 * 117.00169 * 179.97438 * 3 2 1 5 5 C 1.38851 * 119.92433 * 0.27688 * 4 3 2 6 6 C 1.37765 * 120.15212 * 180.27529 * 5 4 3 7 7 N 1.48019 * 119.99721 * 179.74701 * 6 5 4 8 8 O 1.21809 * 120.00328 * 51.37582 * 7 6 5 9 9 O 1.21805 * 120.00077 * 231.37675 * 7 6 5 10 10 C 1.39759 * 120.00029 * 359.72271 * 6 5 4 11 11 C 1.47470 * 120.07451 * 180.02562 * 10 6 5 12 12 O 1.21511 * 120.00102 * 6.47365 * 11 10 6 13 13 O 1.34753 * 120.00205 * 186.46610 * 11 10 6 14 14 C 1.45202 * 117.00251 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.47163 * 30.00571 * 14 13 11 16 16 C 1.52998 * 109.46796 * 270.00341 * 14 13 11 17 17 C 1.50693 * 109.47011 * 150.00385 * 14 13 11 18 18 H 1.08006 * 120.00044 * 33.67465 * 17 14 13 19 19 C 1.37879 * 120.00294 * 213.67131 * 17 14 13 20 20 N 1.31510 * 120.00238 * 184.65750 * 19 17 14 21 21 Si 1.86803 * 119.99467 * 4.65899 * 19 17 14 22 22 H 1.48498 * 109.46941 * 84.84369 * 21 19 17 23 23 H 1.48500 * 109.47021 * 204.83973 * 21 19 17 24 24 H 1.48492 * 109.47153 * 324.84514 * 21 19 17 25 25 C 1.39788 * 119.84985 * 359.97438 * 10 6 5 26 26 C 1.38124 * 119.84302 * 0.02562 * 25 10 6 27 27 O 1.36007 * 119.99435 * 179.97438 * 26 25 10 28 28 C 1.42895 * 117.00416 * 359.97438 * 27 26 25 29 29 H 1.09003 * 109.46967 * 300.00347 * 1 2 3 30 30 H 1.08998 * 109.46718 * 59.99884 * 1 2 3 31 31 H 1.08994 * 109.47435 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47437 * 239.99894 * 2 1 3 33 33 H 1.08999 * 109.47145 * 119.99797 * 2 1 3 34 34 H 1.07995 * 119.92138 * 0.02562 * 5 4 3 35 35 H 1.09005 * 109.47355 * 65.04391 * 16 14 13 36 36 H 1.09005 * 109.46940 * 185.03676 * 16 14 13 37 37 H 1.09000 * 109.47624 * 305.03541 * 16 14 13 38 38 H 0.96996 * 119.99855 * 180.02562 * 20 19 17 39 39 H 1.07998 * 120.07963 * 180.02562 * 25 10 6 40 40 H 1.09002 * 109.47122 * 179.97438 * 28 27 26 41 41 H 1.09003 * 109.46830 * 60.00423 * 28 27 26 42 42 H 1.08997 * 109.47486 * 300.00169 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3526 1.5251 0.0005 5 6 4.1969 0.4228 -0.0048 6 6 5.5634 0.5978 0.0015 7 7 6.4603 -0.5798 0.0015 8 8 6.3090 -1.4607 -0.8261 9 8 7.3497 -0.6679 0.8290 10 6 6.1028 1.8871 0.0073 11 6 7.5653 2.0763 0.0135 12 8 8.3025 1.1176 -0.1052 13 8 8.0842 3.3123 0.1505 14 6 9.5320 3.4236 0.1472 15 1 9.9561 2.6290 -0.4667 16 6 10.0564 3.2970 1.5789 17 6 9.9316 4.7623 -0.4177 18 1 9.3099 5.6285 -0.2453 19 6 11.0909 4.8814 -1.1545 20 7 11.4875 6.0646 -1.5696 21 14 12.0981 3.3622 -1.5630 22 1 11.5518 2.7202 -2.7855 23 1 13.5110 3.7537 -1.7988 24 1 12.0321 2.4050 -0.4296 25 6 5.2528 2.9969 0.0063 26 6 3.8838 2.8141 0.0000 27 8 3.0540 3.8917 -0.0005 28 6 3.6668 5.1825 0.0062 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7814 -0.5740 -0.0097 35 1 9.8456 2.2962 1.9560 36 1 11.1327 3.4695 1.5882 37 1 9.5647 4.0351 2.2126 38 1 12.3029 6.1483 -2.0883 39 1 5.6657 3.9948 0.0103 40 1 2.8943 5.9515 0.0045 41 1 4.2908 5.2930 -0.8807 42 1 4.2827 5.2877 0.8993 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733709605.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:17 Heat of formation + Delta-G solvation = -145.125523 kcal Electronic energy + Delta-G solvation = -30186.915739 eV Core-core repulsion = 25715.586993 eV Total energy + Delta-G solvation = -4471.328746 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.43778 -42.11551 -41.35819 -39.95345 -38.53390 -37.78666 -37.47282 -35.27002 -33.35985 -32.96970 -32.33078 -31.38446 -28.88237 -27.57916 -27.44086 -25.74868 -24.79442 -23.26307 -22.95397 -21.85505 -20.84514 -19.96239 -19.87689 -19.21785 -19.05629 -18.39717 -18.30290 -17.63303 -17.42649 -17.22830 -17.03326 -16.62565 -16.31298 -15.92352 -15.19143 -14.84235 -14.74875 -14.57811 -14.46743 -14.31731 -13.93154 -13.82455 -13.39272 -13.31930 -13.13679 -13.00076 -12.80744 -12.73494 -12.64291 -12.52035 -12.46847 -12.33795 -12.20654 -11.98738 -11.84379 -11.63631 -11.55712 -11.26056 -10.93047 -10.60296 -9.53888 -8.51695 -6.60795 -1.35592 -0.73655 -0.22878 0.16552 1.12116 1.20514 1.27211 1.37009 1.46408 1.72490 1.84241 1.95612 2.15754 2.82670 2.92263 3.18589 3.33244 3.39324 3.69412 3.94750 3.98920 4.00883 4.09050 4.16479 4.24285 4.31737 4.34984 4.41411 4.54896 4.58356 4.67250 4.76159 4.81594 4.83624 4.92627 5.12591 5.23701 5.26906 5.30428 5.42244 5.66368 6.03370 6.04072 6.39006 6.46699 6.59148 7.06064 8.62814 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014310 B = 0.003581 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.167965 B = 7816.836358 C = 9250.403961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.029 3.971 3 O -0.292 6.292 4 C 0.156 3.844 5 C -0.123 4.123 6 C 0.009 3.991 7 N 0.025 4.975 8 O -0.158 6.158 9 O -0.141 6.141 10 C -0.081 4.081 11 C 0.483 3.517 12 O -0.521 6.521 13 O -0.340 6.340 14 C 0.185 3.815 15 H 0.034 0.966 16 C -0.149 4.149 17 C -0.528 4.528 18 H 0.058 0.942 19 C 0.043 3.957 20 N -0.916 5.916 21 Si 0.917 3.083 22 H -0.274 1.274 23 H -0.264 1.264 24 H -0.252 1.252 25 C -0.104 4.104 26 C 0.139 3.861 27 O -0.295 6.295 28 C 0.005 3.995 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.191 0.809 35 H 0.044 0.956 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.277 0.723 39 H 0.182 0.818 40 H 0.136 0.864 41 H 0.067 0.933 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.542 -8.583 4.254 26.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.045 4.045 3 O -0.205 6.205 4 C 0.107 3.893 5 C -0.142 4.142 6 C -0.073 4.073 7 N 0.550 4.450 8 O -0.375 6.375 9 O -0.363 6.363 10 C -0.083 4.083 11 C 0.327 3.673 12 O -0.413 6.413 13 O -0.256 6.256 14 C 0.132 3.868 15 H 0.052 0.948 16 C -0.207 4.207 17 C -0.565 4.565 18 H 0.077 0.923 19 C -0.159 4.159 20 N -0.554 5.554 21 Si 0.741 3.259 22 H -0.199 1.199 23 H -0.189 1.189 24 H -0.176 1.176 25 C -0.123 4.123 26 C 0.092 3.908 27 O -0.208 6.208 28 C -0.089 4.089 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.122 0.878 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.208 0.792 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.199 0.801 40 H 0.154 0.846 41 H 0.086 0.914 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -24.997 -7.955 4.109 26.552 hybrid contribution 1.710 -0.755 -0.449 1.922 sum -23.287 -8.710 3.660 25.131 Atomic orbital electron populations 1.21807 0.90533 1.04542 1.03633 1.23454 0.97903 0.79704 1.03412 1.86252 1.15054 1.32269 1.86943 1.17976 0.84425 0.89561 0.97365 1.20716 0.88121 1.01714 1.03695 1.20587 0.90599 0.83654 1.12465 1.43483 1.00487 1.01594 0.99423 1.94466 1.76650 1.33675 1.32734 1.94609 1.24821 1.83840 1.33069 1.18586 0.90556 0.91917 1.07276 1.21321 0.89420 0.82800 0.73759 1.90933 1.62364 1.41750 1.46211 1.86637 1.29064 1.28609 1.81310 1.20929 0.73033 0.96672 0.96136 0.94827 1.22171 1.01757 1.00441 0.96307 1.20842 1.08191 0.92918 1.34553 0.92330 1.25508 0.98008 0.98550 0.93859 1.69917 1.24546 1.24354 1.36558 0.86186 0.79209 0.80480 0.80054 1.19907 1.18860 1.17625 1.21486 0.90639 0.99952 1.00267 1.18311 0.88130 0.87082 0.97320 1.86237 1.33433 1.13985 1.87106 1.23655 1.01803 0.80355 1.03067 0.91478 0.91511 0.87837 0.89928 0.90021 0.79232 0.93673 0.91372 0.91295 0.91322 0.80062 0.84565 0.91426 0.90976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 71.98 0.74 -0.23 16 2 C 0.03 0.28 5.46 71.98 0.39 0.67 16 3 O -0.29 -4.90 9.90 -77.19 -0.76 -5.67 16 4 C 0.16 3.10 6.71 22.70 0.15 3.25 16 5 C -0.12 -2.60 8.80 22.30 0.20 -2.40 16 6 C 0.01 0.28 6.31 36.63 0.23 0.51 16 7 N 0.02 0.91 3.58 -45.85 -0.16 0.74 16 8 O -0.16 -5.57 19.14 18.87 0.36 -5.21 16 9 O -0.14 -5.82 16.12 26.32 0.42 -5.40 16 10 C -0.08 -2.66 5.87 -20.10 -0.12 -2.78 16 11 C 0.48 20.58 7.73 70.26 0.54 21.12 16 12 O -0.52 -25.25 12.24 27.62 0.34 -24.91 16 13 O -0.34 -15.41 9.13 -56.64 -0.52 -15.93 16 14 C 0.19 9.26 2.18 29.85 0.07 9.33 16 15 H 0.03 1.79 4.40 -2.39 -0.01 1.78 16 16 C -0.15 -6.54 9.53 71.98 0.69 -5.86 16 17 C -0.53 -29.65 9.25 25.60 0.24 -29.41 16 18 H 0.06 3.53 8.06 -2.91 -0.02 3.51 16 19 C 0.04 2.42 5.47 84.66 0.46 2.88 16 20 N -0.92 -54.09 13.96 21.45 0.30 -53.79 16 21 Si 0.92 44.23 26.96 68.60 1.85 46.08 16 22 H -0.27 -13.27 7.11 99.48 0.71 -12.56 16 23 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.25 -11.87 6.85 99.48 0.68 -11.19 16 25 C -0.10 -2.68 8.60 22.62 0.19 -2.49 16 26 C 0.14 3.03 6.69 22.53 0.15 3.18 16 27 O -0.30 -5.66 10.28 -79.62 -0.82 -6.47 16 28 C 0.00 0.07 9.81 113.37 1.11 1.18 16 29 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.08 0.63 7.64 -2.39 -0.02 0.61 16 33 H 0.08 0.59 7.66 -2.39 -0.02 0.57 16 34 H 0.19 2.81 6.27 -2.91 -0.02 2.79 16 35 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.07 2.94 8.13 -2.38 -0.02 2.92 16 37 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 38 H 0.28 15.17 8.31 -92.71 -0.77 14.40 16 39 H 0.18 4.40 5.85 -2.91 -0.02 4.39 16 40 H 0.14 1.12 8.14 -2.39 -0.02 1.11 16 41 H 0.07 0.95 7.66 -2.39 -0.02 0.93 16 42 H 0.07 0.94 7.66 -2.39 -0.02 0.92 16 Total: -1.00 -73.98 365.56 7.10 -66.87 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: 1.05 Total: 4.73 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: 5.05 Total: -1.05 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: 0.14 Total: -53.04 kcal Atomic # 8 Polarization: -62.61 SS G_CDS: -0.98 Total: -63.59 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.85 Total: 46.08 kcal Total: -73.98 7.10 -66.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709605.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.252 kcal (2) G-P(sol) polarization free energy of solvation -73.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds