Wall clock time and date at job start Wed Apr 1 2020 00:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36009 * 117.00200 * 2 1 4 4 C 1.38204 * 119.96588 * 0.02562 * 3 2 1 5 5 C 1.39760 * 119.93650 * 180.02562 * 4 3 2 6 6 C 1.47483 * 120.06100 * 179.97438 * 5 4 3 7 7 O 1.21499 * 120.00082 * 0.02562 * 6 5 4 8 8 O 1.34751 * 119.99813 * 180.02562 * 6 5 4 9 9 C 1.45206 * 116.99792 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.47021 * 179.97438 * 9 8 6 11 11 O 1.21282 * 120.00041 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00037 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00169 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47324 * 179.97438 * 13 12 10 15 15 H 1.07999 * 119.99822 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00339 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99769 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00300 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46819 * 59.99744 * 18 16 14 20 20 H 1.48494 * 109.47285 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47086 * 300.00040 * 18 16 14 22 22 C 1.39763 * 119.88009 * 0.27240 * 5 4 3 23 23 C 1.38211 * 119.93484 * 359.46718 * 22 5 4 24 24 O 1.36001 * 119.97165 * 180.23103 * 23 22 5 25 25 C 1.42903 * 116.99839 * 0.28098 * 24 23 22 26 26 C 1.39246 * 119.96828 * 180.02562 * 3 2 1 27 27 O 1.35874 * 119.94126 * 359.97438 * 26 3 2 28 28 H 1.08997 * 109.47225 * 59.99603 * 1 2 3 29 29 H 1.09001 * 109.47355 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47109 * 300.00243 * 1 2 3 31 31 H 1.08000 * 120.03602 * 359.97438 * 4 3 2 32 32 H 1.09000 * 109.47070 * 300.00009 * 9 8 6 33 33 H 1.09001 * 109.46626 * 60.00027 * 9 8 6 34 34 H 0.96996 * 119.99844 * 359.97438 * 12 10 9 35 35 H 1.09004 * 109.46923 * 300.00119 * 13 12 10 36 36 H 1.09004 * 109.47042 * 59.99705 * 13 12 10 37 37 H 0.97000 * 120.00540 * 180.02562 * 17 16 14 38 38 H 1.07996 * 120.03246 * 179.70423 * 22 5 4 39 39 H 1.09002 * 109.47330 * 180.02562 * 25 24 23 40 40 H 1.09004 * 109.47170 * 299.99605 * 25 24 23 41 41 H 1.08999 * 109.47073 * 59.99688 * 25 24 23 42 42 H 0.96703 * 113.99706 * 90.00105 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2931 2.3705 0.0005 5 6 1.9283 3.6154 0.0000 6 6 1.1270 4.8536 0.0000 7 8 -0.0864 4.7920 0.0009 8 8 1.7408 6.0532 -0.0011 9 6 0.8891 7.2293 -0.0004 10 6 1.7454 8.4695 -0.0011 11 8 2.9542 8.3717 -0.0016 12 7 1.1677 9.6872 -0.0002 13 6 2.0000 10.8928 -0.0014 14 6 1.1163 12.1134 -0.0006 15 1 0.0420 12.0022 0.0003 16 6 1.6791 13.3721 -0.0021 17 7 2.9872 13.5074 -0.0037 18 14 0.5835 14.8851 -0.0018 19 1 -0.2724 14.8762 1.2117 20 1 1.4272 16.1071 -0.0030 21 1 -0.2752 14.8747 -1.2134 22 6 3.3242 3.6849 -0.0069 23 6 4.0726 2.5229 -0.0019 24 8 5.4309 2.5897 -0.0038 25 6 6.0164 3.8933 -0.0048 26 6 3.4371 1.2839 -0.0005 27 8 4.1752 0.1432 -0.0005 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2146 2.3140 0.0005 32 1 0.2589 7.2220 -0.8897 33 1 0.2609 7.2224 0.8903 34 1 0.2009 9.7653 0.0006 35 1 2.6307 10.8998 0.8876 36 1 2.6280 10.8999 -0.8924 37 1 3.3833 14.3929 -0.0043 38 1 3.8175 4.6455 -0.0121 39 1 7.1027 3.8038 -0.0067 40 1 5.6953 4.4352 -0.8944 41 1 5.6977 4.4353 0.8856 42 1 4.3886 -0.1872 -0.8840 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754266566.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:26 Heat of formation + Delta-G solvation = -205.213108 kcal Electronic energy + Delta-G solvation = -28430.928376 eV Core-core repulsion = 23956.994036 eV Total energy + Delta-G solvation = -4473.934339 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.32866 -40.40266 -39.39468 -38.79139 -37.54368 -36.72201 -36.17469 -34.31134 -32.46312 -30.90626 -30.14105 -29.20916 -28.17457 -27.31079 -26.62757 -24.35487 -22.68374 -22.30305 -21.35442 -20.02556 -19.41008 -18.60182 -17.86078 -17.39821 -17.08228 -16.78948 -16.68460 -16.49299 -16.28425 -15.86385 -15.55260 -15.42776 -15.15052 -14.85783 -14.70804 -14.32294 -14.12170 -13.57562 -13.19745 -13.12909 -12.81504 -12.64464 -12.48880 -12.04817 -12.03506 -11.87990 -11.84186 -11.80806 -11.09484 -11.08659 -11.06271 -10.94762 -10.80614 -10.80312 -10.38500 -9.50157 -9.26180 -8.82288 -8.73211 -8.64595 -8.05080 -6.23441 -4.31151 0.16693 0.90249 2.16263 2.19734 2.43455 3.09367 3.21478 3.22197 3.24021 3.26612 3.27863 3.70731 3.86983 4.27813 4.38170 4.50938 4.58535 4.72544 4.77148 4.78475 4.92152 5.01362 5.02565 5.07143 5.12365 5.15661 5.17199 5.26371 5.36986 5.39332 5.65338 5.78373 5.85512 6.14250 6.70331 6.82631 7.16484 7.23635 7.38490 7.40375 7.47661 7.57319 7.87485 8.43473 8.65418 8.89594 9.35310 10.86583 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020339 B = 0.002042 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.324030 B =13709.964255 C =15052.662940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.301 6.301 3 C 0.128 3.872 4 C -0.168 4.168 5 C -0.052 4.052 6 C 0.510 3.490 7 O -0.502 6.502 8 O -0.322 6.322 9 C 0.049 3.951 10 C 0.500 3.500 11 O -0.535 6.535 12 N -0.705 5.705 13 C 0.252 3.748 14 C -0.547 4.547 15 H 0.064 0.936 16 C 0.064 3.936 17 N -0.885 5.885 18 Si 0.906 3.094 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.169 4.169 23 C 0.131 3.869 24 O -0.302 6.302 25 C 0.020 3.980 26 C 0.076 3.924 27 O -0.471 6.471 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.151 0.849 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.393 0.607 35 H 0.030 0.970 36 H 0.030 0.970 37 H 0.267 0.733 38 H 0.158 0.842 39 H 0.106 0.894 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.245 -26.311 -1.653 26.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.214 6.214 3 C 0.081 3.919 4 C -0.187 4.187 5 C -0.053 4.053 6 C 0.354 3.646 7 O -0.392 6.392 8 O -0.237 6.237 9 C -0.029 4.029 10 C 0.283 3.717 11 O -0.413 6.413 12 N -0.356 5.356 13 C 0.132 3.868 14 C -0.585 4.585 15 H 0.082 0.918 16 C -0.140 4.140 17 N -0.522 5.522 18 Si 0.733 3.267 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.200 1.200 22 C -0.188 4.188 23 C 0.084 3.916 24 O -0.215 6.215 25 C -0.075 4.075 26 C 0.029 3.971 27 O -0.280 6.280 28 H 0.078 0.922 29 H 0.123 0.877 30 H 0.079 0.921 31 H 0.168 0.832 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.226 0.774 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.077 0.923 38 H 0.175 0.825 39 H 0.124 0.876 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -1.355 -26.475 -1.042 26.530 hybrid contribution -1.438 1.416 -0.506 2.081 sum -2.793 -25.058 -1.548 25.261 Atomic orbital electron populations 1.23201 0.77662 1.04443 1.02006 1.86155 1.21765 1.25098 1.88380 1.18702 0.90590 0.84965 0.97596 1.21105 1.01229 0.89753 1.06619 1.18552 0.92388 0.90184 1.04187 1.20991 0.86412 0.84095 0.73065 1.90841 1.14680 1.87960 1.45697 1.86598 1.40040 1.13698 1.83362 1.22934 0.92691 0.82392 1.04846 1.19845 0.88710 0.84327 0.78794 1.90698 1.14127 1.86721 1.49710 1.46370 1.10985 1.05917 1.72279 1.19179 0.90628 0.78997 0.98032 1.21162 0.93132 0.90463 1.53735 0.91803 1.24951 0.95212 0.99239 0.94565 1.69956 1.09637 1.24056 1.48517 0.86441 0.80094 0.81446 0.78742 1.20019 1.21032 1.20019 1.21555 0.93249 0.98876 1.05155 1.18844 0.83742 0.92213 0.96813 1.86140 1.15564 1.31681 1.88073 1.23268 0.99279 0.82392 1.02561 1.16953 0.86168 0.84772 1.09243 1.84883 1.71708 1.38174 1.33201 0.92156 0.87703 0.92113 0.83165 0.88255 0.88255 0.77373 0.95227 0.95242 0.92284 0.82482 0.87591 0.91789 0.91732 0.75709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.12 16 2 O -0.30 -2.83 10.27 -34.51 -0.35 -3.18 16 3 C 0.13 1.33 6.69 -39.22 -0.26 1.07 16 4 C -0.17 -1.77 8.57 -39.03 -0.33 -2.11 16 5 C -0.05 -0.62 5.87 -104.99 -0.62 -1.24 16 6 C 0.51 7.06 7.89 34.50 0.27 7.33 16 7 O -0.50 -7.46 16.13 -19.26 -0.31 -7.77 16 8 O -0.32 -4.91 8.99 -47.31 -0.43 -5.34 16 9 C 0.05 0.71 5.95 36.01 0.21 0.92 16 10 C 0.50 9.60 7.91 -10.99 -0.09 9.51 16 11 O -0.54 -12.45 16.50 -14.11 -0.23 -12.68 16 12 N -0.71 -14.08 5.55 -61.47 -0.34 -14.42 16 13 C 0.25 6.42 5.43 -5.20 -0.03 6.39 16 14 C -0.55 -14.36 9.28 -34.44 -0.32 -14.68 16 15 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 16 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 17 N -0.88 -25.43 13.29 55.43 0.74 -24.70 16 18 Si 0.91 20.38 29.54 -169.99 -5.02 15.36 16 19 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 22 C -0.17 -1.95 8.60 -39.02 -0.34 -2.29 16 23 C 0.13 1.46 6.69 -39.21 -0.26 1.20 16 24 O -0.30 -3.24 10.27 -34.49 -0.35 -3.59 16 25 C 0.02 0.16 9.81 101.05 0.99 1.15 16 26 C 0.08 0.83 6.73 -38.83 -0.26 0.56 16 27 O -0.47 -4.76 13.04 -44.74 -0.58 -5.34 16 28 H 0.06 0.30 7.66 -51.93 -0.40 -0.09 16 29 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 31 H 0.15 1.41 5.86 -52.49 -0.31 1.10 16 32 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.39 6.56 8.32 -40.82 -0.34 6.22 16 35 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.16 1.81 5.82 -52.49 -0.31 1.51 16 39 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.51 7.65 -51.93 -0.40 0.11 16 41 H 0.06 0.54 7.67 -51.93 -0.40 0.14 16 42 H 0.39 2.15 9.06 45.56 0.41 2.56 16 LS Contribution 374.03 15.07 5.64 5.64 Total: -1.00 -34.99 374.03 -5.59 -40.57 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -4.20 Total: 4.86 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: -0.14 Total: 10.59 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.40 Total: -39.12 kcal Atomic # 8 Polarization: -35.64 SS G_CDS: -2.26 Total: -37.91 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.99 -5.59 -40.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754266566.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.638 kcal (2) G-P(sol) polarization free energy of solvation -34.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds