Wall clock time and date at job start Wed Apr 1 2020 00:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36009 * 117.00200 * 2 1 4 4 C 1.38204 * 119.96588 * 0.02562 * 3 2 1 5 5 C 1.39760 * 119.93650 * 180.02562 * 4 3 2 6 6 C 1.47483 * 120.06100 * 179.97438 * 5 4 3 7 7 O 1.21499 * 120.00082 * 0.02562 * 6 5 4 8 8 O 1.34751 * 119.99813 * 180.02562 * 6 5 4 9 9 C 1.45206 * 116.99792 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.47021 * 179.97438 * 9 8 6 11 11 O 1.21282 * 120.00041 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00037 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00169 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47324 * 179.97438 * 13 12 10 15 15 H 1.07999 * 119.99822 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00339 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99769 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00300 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46819 * 59.99744 * 18 16 14 20 20 H 1.48494 * 109.47285 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47086 * 300.00040 * 18 16 14 22 22 C 1.39763 * 119.88009 * 0.27240 * 5 4 3 23 23 C 1.38211 * 119.93484 * 359.46718 * 22 5 4 24 24 O 1.36001 * 119.97165 * 180.23103 * 23 22 5 25 25 C 1.42903 * 116.99839 * 0.28098 * 24 23 22 26 26 C 1.39246 * 119.96828 * 180.02562 * 3 2 1 27 27 O 1.35874 * 119.94126 * 359.97438 * 26 3 2 28 28 H 1.08997 * 109.47225 * 59.99603 * 1 2 3 29 29 H 1.09001 * 109.47355 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47109 * 300.00243 * 1 2 3 31 31 H 1.08000 * 120.03602 * 359.97438 * 4 3 2 32 32 H 1.09000 * 109.47070 * 300.00009 * 9 8 6 33 33 H 1.09001 * 109.46626 * 60.00027 * 9 8 6 34 34 H 0.96996 * 119.99844 * 359.97438 * 12 10 9 35 35 H 1.09004 * 109.46923 * 300.00119 * 13 12 10 36 36 H 1.09004 * 109.47042 * 59.99705 * 13 12 10 37 37 H 0.97000 * 120.00540 * 180.02562 * 17 16 14 38 38 H 1.07996 * 120.03246 * 179.70423 * 22 5 4 39 39 H 1.09002 * 109.47330 * 180.02562 * 25 24 23 40 40 H 1.09004 * 109.47170 * 299.99605 * 25 24 23 41 41 H 1.08999 * 109.47073 * 59.99688 * 25 24 23 42 42 H 0.96703 * 113.99706 * 90.00105 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2931 2.3705 0.0005 5 6 1.9283 3.6154 0.0000 6 6 1.1270 4.8536 0.0000 7 8 -0.0864 4.7920 0.0009 8 8 1.7408 6.0532 -0.0011 9 6 0.8891 7.2293 -0.0004 10 6 1.7454 8.4695 -0.0011 11 8 2.9542 8.3717 -0.0016 12 7 1.1677 9.6872 -0.0002 13 6 2.0000 10.8928 -0.0014 14 6 1.1163 12.1134 -0.0006 15 1 0.0420 12.0022 0.0003 16 6 1.6791 13.3721 -0.0021 17 7 2.9872 13.5074 -0.0037 18 14 0.5835 14.8851 -0.0018 19 1 -0.2724 14.8762 1.2117 20 1 1.4272 16.1071 -0.0030 21 1 -0.2752 14.8747 -1.2134 22 6 3.3242 3.6849 -0.0069 23 6 4.0726 2.5229 -0.0019 24 8 5.4309 2.5897 -0.0038 25 6 6.0164 3.8933 -0.0048 26 6 3.4371 1.2839 -0.0005 27 8 4.1752 0.1432 -0.0005 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2146 2.3140 0.0005 32 1 0.2589 7.2220 -0.8897 33 1 0.2609 7.2224 0.8903 34 1 0.2009 9.7653 0.0006 35 1 2.6307 10.8998 0.8876 36 1 2.6280 10.8999 -0.8924 37 1 3.3833 14.3929 -0.0043 38 1 3.8175 4.6455 -0.0121 39 1 7.1027 3.8038 -0.0067 40 1 5.6953 4.4352 -0.8944 41 1 5.6977 4.4353 0.8856 42 1 4.3886 -0.1872 -0.8840 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754266566.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:26 Heat of formation + Delta-G solvation = -231.058596 kcal Electronic energy + Delta-G solvation = -28432.049120 eV Core-core repulsion = 23956.994036 eV Total energy + Delta-G solvation = -4475.055084 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.22244 -41.45880 -40.36260 -40.12108 -38.29237 -37.80062 -37.11225 -36.18569 -34.41914 -31.82183 -30.95956 -30.62364 -28.83616 -28.59470 -27.74484 -25.38904 -24.48375 -23.11537 -22.35544 -21.66309 -20.28160 -19.50369 -19.18904 -18.62898 -17.91757 -17.90486 -17.76160 -17.52081 -17.28276 -17.00859 -16.87522 -16.53375 -16.26806 -16.18498 -15.98972 -15.57104 -14.80403 -14.77111 -14.59913 -14.27703 -14.05432 -13.87505 -13.73709 -13.45476 -13.37006 -12.96163 -12.68573 -12.64870 -12.53340 -12.50961 -12.24481 -11.98167 -11.93373 -11.85321 -11.77525 -11.52490 -10.92874 -10.80637 -9.93274 -9.53483 -9.45328 -8.29533 -6.45987 -0.72775 0.08323 1.07532 1.18718 1.44725 1.47754 1.54365 1.56138 1.71347 2.31835 2.35420 2.51370 2.55652 2.96502 3.05713 3.37604 3.65812 3.72130 3.78661 3.89270 4.01001 4.03918 4.21123 4.33574 4.34154 4.37506 4.38506 4.56889 4.72086 4.75432 4.84423 4.94578 5.01402 5.05761 5.10760 5.22211 5.41321 5.62464 5.82122 6.03165 6.08990 6.40120 6.62661 6.75239 6.77016 7.20169 7.35034 8.82170 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020339 B = 0.002042 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.324030 B =13709.964255 C =15052.662940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.311 6.311 3 C 0.130 3.870 4 C -0.160 4.160 5 C -0.066 4.066 6 C 0.516 3.484 7 O -0.513 6.513 8 O -0.339 6.339 9 C 0.060 3.940 10 C 0.500 3.500 11 O -0.581 6.581 12 N -0.698 5.698 13 C 0.267 3.733 14 C -0.558 4.558 15 H 0.086 0.914 16 C 0.005 3.995 17 N -0.929 5.929 18 Si 0.984 3.016 19 H -0.263 1.263 20 H -0.287 1.287 21 H -0.262 1.262 22 C -0.172 4.172 23 C 0.124 3.876 24 O -0.311 6.311 25 C 0.015 3.985 26 C 0.075 3.925 27 O -0.482 6.482 28 H 0.069 0.931 29 H 0.128 0.872 30 H 0.065 0.935 31 H 0.163 0.837 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.413 0.587 35 H -0.007 1.007 36 H -0.007 1.007 37 H 0.269 0.731 38 H 0.152 0.848 39 H 0.128 0.872 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.604 -27.240 -1.782 27.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.224 6.224 3 C 0.083 3.917 4 C -0.179 4.179 5 C -0.067 4.067 6 C 0.361 3.639 7 O -0.403 6.403 8 O -0.254 6.254 9 C -0.017 4.017 10 C 0.286 3.714 11 O -0.462 6.462 12 N -0.350 5.350 13 C 0.145 3.855 14 C -0.595 4.595 15 H 0.104 0.896 16 C -0.195 4.195 17 N -0.568 5.568 18 Si 0.807 3.193 19 H -0.187 1.187 20 H -0.212 1.212 21 H -0.187 1.187 22 C -0.191 4.191 23 C 0.077 3.923 24 O -0.224 6.224 25 C -0.079 4.079 26 C 0.028 3.972 27 O -0.293 6.293 28 H 0.087 0.913 29 H 0.146 0.854 30 H 0.083 0.917 31 H 0.181 0.819 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.249 0.751 35 H 0.011 0.989 36 H 0.011 0.989 37 H 0.078 0.922 38 H 0.169 0.831 39 H 0.146 0.854 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -3.766 -27.447 -1.184 27.729 hybrid contribution -0.652 1.552 -0.474 1.749 sum -4.419 -25.894 -1.658 26.321 Atomic orbital electron populations 1.23511 0.75765 1.06303 1.02648 1.86157 1.23714 1.24435 1.88093 1.18704 0.90488 0.85380 0.97144 1.21198 1.01833 0.89141 1.05722 1.18534 0.92417 0.89972 1.05823 1.21166 0.86394 0.83851 0.72465 1.90827 1.14981 1.87969 1.46487 1.86589 1.40803 1.14319 1.83721 1.22837 0.91364 0.79949 1.07554 1.20622 0.88572 0.85351 0.76853 1.90679 1.16574 1.87483 1.51437 1.46036 1.11517 1.04947 1.72480 1.18621 0.90688 0.81567 0.94634 1.21580 0.94211 0.90640 1.53101 0.89605 1.26037 0.96599 1.03004 0.93880 1.70118 1.11930 1.24931 1.49784 0.85218 0.77977 0.76619 0.79479 1.18720 1.21240 1.18677 1.21494 0.93250 0.98863 1.05507 1.18913 0.83993 0.92276 0.97142 1.86127 1.15369 1.32818 1.88082 1.23439 1.00482 0.81625 1.02371 1.17093 0.86625 0.84887 1.08645 1.84819 1.71636 1.37832 1.35056 0.91255 0.85363 0.91679 0.81911 0.85368 0.85467 0.75084 0.98918 0.98888 0.92218 0.83089 0.85360 0.91757 0.92168 0.73462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.22 16 2 O -0.31 -5.28 10.27 -79.55 -0.82 -6.10 16 3 C 0.13 2.53 6.69 22.50 0.15 2.69 16 4 C -0.16 -3.16 8.57 22.63 0.19 -2.97 16 5 C -0.07 -1.55 5.87 -20.10 -0.12 -1.67 16 6 C 0.52 13.68 7.89 70.26 0.55 14.24 16 7 O -0.51 -14.20 16.13 19.84 0.32 -13.88 16 8 O -0.34 -10.08 8.99 -50.23 -0.45 -10.54 16 9 C 0.06 1.63 5.95 71.24 0.42 2.05 16 10 C 0.50 19.20 7.91 87.66 0.69 19.89 16 11 O -0.58 -27.96 16.50 15.76 0.26 -27.70 16 12 N -0.70 -27.80 5.55 -466.78 -2.59 -30.39 16 13 C 0.27 14.08 5.43 85.63 0.46 14.55 16 14 C -0.56 -29.25 9.28 25.60 0.24 -29.02 16 15 H 0.09 4.02 7.60 -2.91 -0.02 4.00 16 16 C 0.00 0.25 5.46 84.65 0.46 0.72 16 17 N -0.93 -54.73 13.29 21.45 0.28 -54.45 16 18 Si 0.98 41.25 29.54 68.60 2.03 43.28 16 19 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 20 H -0.29 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 22 C -0.17 -3.98 8.60 22.63 0.19 -3.78 16 23 C 0.12 2.74 6.69 22.51 0.15 2.89 16 24 O -0.31 -6.62 10.27 -79.46 -0.82 -7.43 16 25 C 0.01 0.25 9.81 113.37 1.11 1.36 16 26 C 0.07 1.57 6.73 22.76 0.15 1.72 16 27 O -0.48 -9.21 13.04 -67.85 -0.88 -10.10 16 28 H 0.07 0.53 7.66 -2.39 -0.02 0.52 16 29 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.56 7.66 -2.38 -0.02 0.55 16 31 H 0.16 2.73 5.86 -2.91 -0.02 2.71 16 32 H 0.13 2.82 8.14 -2.39 -0.02 2.80 16 33 H 0.13 2.83 8.14 -2.39 -0.02 2.81 16 34 H 0.41 13.10 8.32 -92.71 -0.77 12.33 16 35 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 36 H -0.01 -0.41 8.14 -2.38 -0.02 -0.42 16 37 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 38 H 0.15 3.62 5.82 -2.91 -0.02 3.60 16 39 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.06 1.05 7.65 -2.38 -0.02 1.04 16 41 H 0.06 1.05 7.67 -2.39 -0.02 1.03 16 42 H 0.41 4.01 9.06 -74.05 -0.67 3.34 16 Total: -1.00 -76.96 374.03 2.78 -74.18 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -0.34 Total: 19.23 kcal Atomic # 6 Polarization: 18.11 SS G_CDS: 5.79 Total: 23.89 kcal Atomic # 7 Polarization: -82.54 SS G_CDS: -2.30 Total: -84.84 kcal Atomic # 8 Polarization: -73.35 SS G_CDS: -2.39 Total: -75.74 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Total: -76.96 2.78 -74.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754266566.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.875 kcal (2) G-P(sol) polarization free energy of solvation -76.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds