Wall clock time and date at job start Tue Mar 31 2020 23:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46848 * 60.00326 * 8 6 4 10 10 H 1.48500 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47237 * 300.00475 * 8 6 4 12 12 O 1.45194 * 109.47339 * 120.00075 * 2 1 3 13 13 C 1.34222 * 117.00395 * 269.99953 * 12 2 1 14 14 O 1.20824 * 120.00026 * 0.02562 * 13 12 2 15 15 C 1.50702 * 120.00440 * 179.97438 * 13 12 2 16 16 H 1.08998 * 110.85542 * 300.70509 * 15 13 12 17 17 C 1.54629 * 110.96722 * 64.49304 * 15 13 12 18 18 C 1.51342 * 104.16649 * 142.89360 * 17 15 13 19 19 O 1.21295 * 124.93029 * 163.73481 * 18 17 15 20 20 N 1.34416 * 110.13144 * 343.79815 * 18 17 15 21 21 C 1.40172 * 124.35274 * 179.54325 * 20 18 17 22 22 C 1.38984 * 120.08383 * 89.74510 * 21 20 18 23 23 F 1.35098 * 120.04505 * 359.97438 * 22 21 20 24 24 C 1.38343 * 119.91111 * 179.75303 * 22 21 20 25 25 C 1.38272 * 120.08389 * 0.52269 * 24 22 21 26 26 C 1.38266 * 120.17288 * 359.75098 * 25 24 22 27 27 C 1.38346 * 120.08481 * 359.97438 * 26 25 24 28 28 F 1.35098 * 120.04103 * 180.02562 * 27 26 25 29 29 C 1.46769 * 111.29945 * 359.56156 * 20 18 17 30 30 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 33 33 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 34 34 H 1.08999 * 110.48510 * 261.59306 * 17 15 13 35 35 H 1.08994 * 110.48893 * 24.24177 * 17 15 13 36 36 H 1.07994 * 119.95852 * 180.29678 * 24 22 21 37 37 H 1.07998 * 119.91227 * 179.77234 * 25 24 22 38 38 H 1.07993 * 119.95615 * 179.97438 * 26 25 24 39 39 H 1.09005 * 110.24387 * 258.01935 * 29 20 18 40 40 H 1.08997 * 110.24675 * 136.01751 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0078 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 8 2.0140 -0.6845 1.1855 13 6 2.2172 0.0639 2.2810 14 8 1.9974 1.2516 2.2506 15 6 2.7183 -0.5773 3.5494 16 1 2.0305 -1.3507 3.8912 17 6 4.1419 -1.1491 3.3553 18 6 4.8324 -0.8794 4.6747 19 8 5.8596 -1.4096 5.0421 20 7 4.1414 0.0321 5.3807 21 6 4.5104 0.4937 6.6518 22 6 5.3417 1.6005 6.7768 23 9 5.7963 2.2331 5.6730 24 6 5.6995 2.0561 8.0331 25 6 5.2398 1.4055 9.1632 26 6 4.4172 0.3007 9.0428 27 6 4.0504 -0.1576 7.7901 28 9 3.2461 -1.2368 7.6735 29 6 2.9506 0.4816 4.6499 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 0.7093 1.1619 -3.4844 34 1 4.0991 -2.2203 3.1584 35 1 4.6536 -0.6313 2.5442 36 1 6.3416 2.9189 8.1312 37 1 5.5238 1.7613 10.1425 38 1 4.0605 -0.2050 9.9278 39 1 3.1299 1.4587 4.2013 40 1 2.0913 0.5249 5.3191 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771283770.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:57 Heat of formation + Delta-G solvation = -193.313185 kcal Electronic energy + Delta-G solvation = -29245.866277 eV Core-core repulsion = 24661.360441 eV Total energy + Delta-G solvation = -4584.505836 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.18151 -50.12945 -42.31606 -41.08166 -39.61842 -38.09558 -37.32557 -35.36879 -34.52687 -31.72548 -31.43971 -30.42121 -29.05428 -27.45159 -25.84108 -24.23658 -24.03458 -23.03102 -21.44569 -21.07674 -19.43332 -19.13806 -18.73433 -18.60926 -18.34105 -17.77936 -17.28437 -16.89312 -16.78787 -16.55144 -16.46855 -16.35936 -16.31274 -15.85998 -15.49313 -15.08719 -14.98205 -14.61723 -14.46456 -14.16565 -13.88081 -13.82758 -13.19736 -13.12160 -13.08852 -13.04742 -12.87020 -12.83315 -12.74078 -12.57691 -12.37635 -12.18136 -11.63048 -11.60097 -11.25097 -11.00196 -10.59194 -10.33536 -10.08117 -9.88865 -8.28648 -6.45011 -0.29304 -0.14885 1.12562 1.18940 1.37652 1.44109 1.45875 1.54128 1.89223 2.22569 2.39734 2.65152 2.94166 3.02430 3.20296 3.28611 3.56352 3.67465 3.71062 3.75190 4.02018 4.10513 4.15309 4.32125 4.43552 4.54748 4.62034 4.65320 4.69680 4.79834 4.84622 4.88857 4.96261 5.10506 5.15489 5.21340 5.49120 5.54727 5.63960 5.69994 5.91046 6.06083 6.58610 6.74429 6.88315 7.26368 8.78589 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.022623 B = 0.002553 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.400243 B =10963.553533 C =11007.094279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.218 3.782 3 H 0.010 0.990 4 C -0.548 4.548 5 H 0.069 0.931 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.979 3.021 9 H -0.263 1.263 10 H -0.279 1.279 11 H -0.270 1.270 12 O -0.353 6.353 13 C 0.465 3.535 14 O -0.541 6.541 15 C -0.080 4.080 16 H 0.164 0.836 17 C -0.132 4.132 18 C 0.527 3.473 19 O -0.551 6.551 20 N -0.574 5.574 21 C 0.039 3.961 22 C 0.107 3.893 23 F -0.142 7.142 24 C -0.150 4.150 25 C -0.035 4.035 26 C -0.147 4.147 27 C 0.118 3.882 28 F -0.133 7.133 29 C 0.122 3.878 30 H 0.028 0.972 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.271 0.729 34 H 0.143 0.857 35 H 0.108 0.892 36 H 0.174 0.826 37 H 0.197 0.803 38 H 0.180 0.820 39 H 0.082 0.918 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.740 0.169 26.098 26.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.165 3.835 3 H 0.028 0.972 4 C -0.586 4.586 5 H 0.088 0.912 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.803 3.197 9 H -0.188 1.188 10 H -0.204 1.204 11 H -0.195 1.195 12 O -0.269 6.269 13 C 0.308 3.692 14 O -0.432 6.432 15 C -0.099 4.099 16 H 0.181 0.819 17 C -0.171 4.171 18 C 0.317 3.683 19 O -0.428 6.428 20 N -0.305 5.305 21 C -0.053 4.053 22 C 0.087 3.913 23 F -0.120 7.120 24 C -0.169 4.169 25 C -0.052 4.052 26 C -0.166 4.166 27 C 0.097 3.903 28 F -0.111 7.111 29 C 0.001 3.999 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.161 0.839 35 H 0.127 0.873 36 H 0.191 0.809 37 H 0.214 0.786 38 H 0.197 0.803 39 H 0.100 0.900 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.102 0.352 26.069 26.776 hybrid contribution -0.056 0.018 -1.691 1.692 sum 6.045 0.370 24.378 25.119 Atomic orbital electron populations 1.21995 0.96545 1.00582 1.01008 1.20380 0.92137 0.92101 0.78896 0.97217 1.21282 1.33413 1.13982 0.89902 0.91237 1.25782 0.94747 0.95655 1.02070 1.69999 1.36564 1.23589 1.25259 0.85283 0.78744 0.78717 0.76990 1.18793 1.20386 1.19488 1.86469 1.75789 1.43427 1.21191 1.23506 0.74023 0.85462 0.86193 1.90619 1.49666 1.18050 1.84894 1.21860 0.99010 0.99705 0.89365 0.81889 1.22295 0.93094 1.06755 0.94992 1.21303 0.83240 0.77335 0.86453 1.90705 1.24421 1.53217 1.74484 1.45497 1.27198 1.42264 1.15515 1.17705 1.04608 0.98499 0.84507 1.18193 0.96484 0.92149 0.84524 1.91512 1.87035 1.80652 1.52818 1.21625 1.02964 1.03331 0.89006 1.21525 0.91933 0.91564 1.00216 1.21647 1.00434 0.99161 0.95354 1.17995 0.92985 0.85518 0.93772 1.91514 1.70506 1.52178 1.96940 1.22171 0.87488 0.97369 0.92888 0.95341 0.93381 0.90206 0.92017 0.83902 0.87347 0.80874 0.78618 0.80291 0.90023 0.86595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.11 9.33 71.98 0.67 -6.43 16 2 C 0.22 11.52 2.56 29.85 0.08 11.60 16 3 H 0.01 0.60 7.16 -2.39 -0.02 0.58 16 4 C -0.55 -30.32 8.90 25.60 0.23 -30.09 16 5 H 0.07 3.74 7.81 -2.91 -0.02 3.72 16 6 C 0.02 0.94 5.30 84.65 0.45 1.39 16 7 N -0.92 -51.86 11.32 21.45 0.24 -51.61 16 8 Si 0.98 42.40 29.54 68.60 2.03 44.42 16 9 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 10 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 11 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 12 O -0.35 -15.77 9.86 -51.34 -0.51 -16.28 16 13 C 0.46 17.71 7.15 71.24 0.51 18.22 16 14 O -0.54 -23.95 14.75 21.97 0.32 -23.63 16 15 C -0.08 -2.12 3.65 -10.48 -0.04 -2.16 16 16 H 0.16 3.23 8.14 -2.39 -0.02 3.21 16 17 C -0.13 -3.54 6.41 30.61 0.20 -3.35 16 18 C 0.53 16.19 7.99 87.92 0.70 16.89 16 19 O -0.55 -20.46 17.71 -3.08 -0.05 -20.51 16 20 N -0.57 -15.68 2.62 -627.16 -1.64 -17.33 16 21 C 0.04 0.94 5.40 38.16 0.21 1.15 16 22 C 0.11 2.38 7.31 22.47 0.16 2.55 16 23 F -0.14 -3.91 17.08 44.97 0.77 -3.14 16 24 C -0.15 -1.87 10.02 22.30 0.22 -1.64 16 25 C -0.03 -0.24 10.04 22.28 0.22 -0.02 16 26 C -0.15 -1.57 10.02 22.30 0.22 -1.34 16 27 C 0.12 2.32 7.31 22.47 0.16 2.49 16 28 F -0.13 -2.95 17.08 44.97 0.77 -2.18 16 29 C 0.12 3.09 6.62 86.83 0.58 3.66 16 30 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.08 4.29 6.07 -2.38 -0.01 4.28 16 33 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 34 H 0.14 3.25 8.14 -2.39 -0.02 3.23 16 35 H 0.11 3.17 7.89 -2.39 -0.02 3.15 16 36 H 0.17 1.23 8.06 -2.91 -0.02 1.20 16 37 H 0.20 -0.44 8.06 -2.91 -0.02 -0.47 16 38 H 0.18 0.79 8.06 -2.91 -0.02 0.76 16 39 H 0.08 2.39 7.01 -2.38 -0.02 2.38 16 40 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -75.41 358.42 7.59 -67.82 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: 1.09 Total: 9.54 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: 4.57 Total: 12.91 kcal Atomic # 7 Polarization: -67.54 SS G_CDS: -1.40 Total: -68.94 kcal Atomic # 8 Polarization: -60.18 SS G_CDS: -0.24 Total: -60.42 kcal Atomic # 9 Polarization: -6.86 SS G_CDS: 1.54 Total: -5.33 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Total: -75.41 7.59 -67.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771283770.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.490 kcal (2) G-P(sol) polarization free energy of solvation -75.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds