Wall clock time and date at job start Tue Mar 31 2020 23:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47101 * 2 1 4 4 C 1.35702 * 117.00085 * 179.97438 * 3 2 1 5 5 C 1.39034 * 119.90639 * 0.02562 * 4 3 2 6 6 C 1.37667 * 120.09494 * 180.02562 * 5 4 3 7 7 C 1.39810 * 119.90314 * 359.97402 * 6 5 4 8 8 C 1.47467 * 120.08874 * 179.97438 * 7 6 5 9 9 O 1.21507 * 120.00154 * 179.97438 * 8 7 6 10 10 O 1.34752 * 120.00313 * 0.02562 * 8 7 6 11 11 C 1.45198 * 117.00139 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46884 * 179.97438 * 11 10 8 13 13 O 1.42899 * 109.47405 * 64.99626 * 12 11 10 14 14 C 1.42901 * 113.99649 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.46545 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00589 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99844 * 180.02562 * 15 14 13 18 18 N 1.31502 * 119.99832 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99825 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46818 * 90.00144 * 19 17 15 21 21 H 1.48498 * 109.47067 * 209.99968 * 19 17 15 22 22 H 1.48496 * 109.47458 * 330.00345 * 19 17 15 23 23 C 1.39769 * 119.81717 * 0.25304 * 7 6 5 24 24 C 1.37703 * 119.90557 * 359.51600 * 23 7 6 25 25 N 1.48013 * 119.95449 * 180.23364 * 24 23 7 26 26 O 1.21802 * 119.99867 * 0.25109 * 25 24 23 27 27 O 1.21797 * 120.00238 * 180.25685 * 25 24 23 28 28 H 1.09004 * 109.46840 * 60.00139 * 1 2 3 29 29 H 1.08997 * 109.46970 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46834 * 300.00039 * 1 2 3 31 31 H 1.09006 * 109.47397 * 240.00284 * 2 1 3 32 32 H 1.09002 * 109.47575 * 119.99852 * 2 1 3 33 33 H 1.08003 * 119.95412 * 0.02562 * 5 4 3 34 34 H 1.08001 * 120.04466 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.47379 * 59.99489 * 11 10 8 36 36 H 1.09001 * 109.46782 * 299.99572 * 11 10 8 37 37 H 1.09002 * 109.46642 * 184.99901 * 12 11 10 38 38 H 1.09002 * 109.47069 * 304.99431 * 12 11 10 39 39 H 1.08990 * 109.47463 * 299.99806 * 14 13 12 40 40 H 1.08992 * 109.47069 * 60.00902 * 14 13 12 41 41 H 0.97004 * 120.00403 * 179.97438 * 18 17 15 42 42 H 1.07998 * 120.04609 * 179.72371 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3516 1.5251 0.0005 5 6 4.1968 0.4211 0.0005 6 6 5.5622 0.5970 0.0016 7 6 6.0986 1.8881 0.0022 8 6 7.5605 2.0813 0.0039 9 8 8.0250 3.2041 0.0039 10 8 8.3814 1.0127 0.0044 11 6 9.8089 1.2780 0.0067 12 6 10.5739 -0.0471 0.0076 13 8 10.3208 -0.7441 -1.2139 14 6 10.9924 -2.0014 -1.3155 15 6 10.6552 -2.6456 -2.6355 16 1 9.9946 -2.1449 -3.3277 17 6 11.1902 -3.8744 -2.9594 18 7 11.9943 -4.4844 -2.1164 19 14 10.7728 -4.6727 -4.5959 20 1 11.7622 -4.2498 -5.6195 21 1 10.8119 -6.1500 -4.4503 22 1 9.4127 -4.2528 -5.0189 23 6 5.2454 2.9952 0.0070 24 6 3.8808 2.8104 0.0011 25 7 2.9763 3.9820 0.0009 26 8 3.4392 5.1086 0.0014 27 8 1.7692 3.8195 0.0004 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.7816 -0.5759 -0.0003 34 1 6.2179 -0.2611 0.0020 35 1 10.0710 1.8490 0.8974 36 1 10.0735 1.8501 -0.8826 37 1 11.6420 0.1502 0.0989 38 1 10.2438 -0.6566 0.8489 39 1 12.0691 -1.8444 -1.2520 40 1 10.6713 -2.6516 -0.5018 41 1 12.3704 -5.3491 -2.3440 42 1 5.6558 3.9941 0.0120 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815181592.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:52 Heat of formation + Delta-G solvation = -148.409964 kcal Electronic energy + Delta-G solvation = -28364.396188 eV Core-core repulsion = 23892.925018 eV Total energy + Delta-G solvation = -4471.471170 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.42702 -41.02290 -40.32656 -38.30473 -37.13038 -36.61123 -36.17648 -33.09365 -32.84193 -32.17113 -31.09134 -30.02407 -27.09980 -26.72221 -25.28699 -24.14835 -22.69103 -22.43682 -22.11074 -21.23789 -19.86441 -18.91393 -18.57910 -17.77088 -17.63992 -16.95481 -16.79391 -16.66134 -16.42589 -16.32553 -15.46832 -15.21318 -14.78358 -14.54853 -14.44913 -14.12443 -13.97941 -13.47068 -13.22001 -13.05421 -12.90851 -12.57906 -12.50271 -12.06952 -11.95609 -11.66848 -11.55486 -11.42115 -11.24521 -11.22251 -11.07752 -10.95004 -10.89011 -10.68996 -10.54045 -10.22371 -10.14371 -9.27083 -9.22575 -8.98052 -8.31566 -6.20597 -4.22728 -0.42888 0.04784 1.00145 1.11215 2.06277 2.17695 2.45106 2.97101 3.23357 3.28879 3.33306 3.77332 3.90036 4.18989 4.23860 4.29650 4.31857 4.32649 4.42296 4.60939 4.63685 4.86329 4.96574 5.08677 5.09124 5.16159 5.27086 5.30922 5.33410 5.44605 5.56143 5.63056 5.73858 5.82081 5.93639 6.10074 6.32615 6.41302 6.95031 7.29586 7.51111 7.55266 7.68900 8.02846 8.41462 8.89567 9.42403 10.90840 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011497 B = 0.002393 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.872610 B =11695.586053 C =13497.838643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.043 3.957 3 O -0.276 6.276 4 C 0.228 3.772 5 C -0.224 4.224 6 C 0.034 3.966 7 C -0.158 4.158 8 C 0.514 3.486 9 O -0.505 6.505 10 O -0.335 6.335 11 C 0.076 3.924 12 C 0.061 3.939 13 O -0.391 6.391 14 C 0.195 3.805 15 C -0.517 4.517 16 H 0.066 0.934 17 C 0.057 3.943 18 N -0.898 5.898 19 Si 0.908 3.092 20 H -0.278 1.278 21 H -0.285 1.285 22 H -0.272 1.272 23 C 0.043 3.957 24 C -0.096 4.096 25 N 0.038 4.962 26 O -0.174 6.174 27 O -0.135 6.135 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.162 0.838 34 H 0.168 0.832 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.007 0.993 40 H 0.007 0.993 41 H 0.265 0.735 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.123 8.854 8.156 22.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.032 4.032 3 O -0.186 6.186 4 C 0.177 3.823 5 C -0.244 4.244 6 C 0.016 3.984 7 C -0.161 4.161 8 C 0.358 3.642 9 O -0.394 6.394 10 O -0.251 6.251 11 C 0.003 3.997 12 C -0.017 4.017 13 O -0.311 6.311 14 C 0.120 3.880 15 C -0.555 4.555 16 H 0.085 0.915 17 C -0.144 4.144 18 N -0.537 5.537 19 Si 0.735 3.265 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.196 1.196 23 C 0.024 3.976 24 C -0.181 4.181 25 N 0.557 4.443 26 O -0.384 6.384 27 O -0.356 6.356 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.179 0.821 34 H 0.186 0.814 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.024 0.976 40 H 0.025 0.975 41 H 0.074 0.926 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -18.674 8.661 8.029 22.095 hybrid contribution 0.148 -0.521 -0.591 0.802 sum -18.527 8.140 7.438 21.559 Atomic orbital electron populations 1.21783 0.91521 1.03286 1.04284 1.23187 0.97128 0.80341 1.02512 1.86383 1.16379 1.31084 1.84786 1.18933 0.84612 0.91353 0.87401 1.21383 0.93605 0.98450 1.10914 1.21878 0.94901 0.97546 0.84109 1.18883 0.90745 0.93347 1.13100 1.20553 0.87150 0.83235 0.73282 1.90870 1.77576 1.25054 1.45945 1.86603 1.19975 1.35382 1.83127 1.23322 0.74931 0.98486 1.02986 1.22339 0.97168 0.91634 0.90538 1.87917 1.72409 1.36048 1.34759 1.20241 0.91454 0.78699 0.97556 1.21033 1.29269 1.03198 1.01980 0.91530 1.24948 0.94935 0.96731 0.97834 1.69949 1.31737 1.16106 1.35892 0.86333 0.79007 0.78180 0.82957 1.20402 1.21031 1.19627 1.20916 0.88725 1.01733 0.86189 1.20233 0.90350 0.83758 1.23748 1.43191 1.01504 1.01753 0.97804 1.94566 1.80465 1.08686 1.54712 1.94582 0.96306 1.92464 1.52272 0.90984 0.89812 0.91030 0.90733 0.90834 0.82065 0.81445 0.90043 0.90097 0.91655 0.93097 0.97556 0.97483 0.92559 0.80901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 10.28 37.16 0.38 -0.27 16 2 C 0.04 0.22 5.45 37.16 0.20 0.42 16 3 O -0.28 -2.49 8.12 -40.98 -0.33 -2.82 16 4 C 0.23 2.15 6.68 -39.01 -0.26 1.89 16 5 C -0.22 -1.67 9.01 -39.50 -0.36 -2.03 16 6 C 0.03 0.30 9.61 -39.20 -0.38 -0.07 16 7 C -0.16 -1.75 5.87 -104.98 -0.62 -2.37 16 8 C 0.51 6.99 7.89 34.49 0.27 7.26 16 9 O -0.50 -7.83 16.13 -19.27 -0.31 -8.14 16 10 O -0.34 -4.90 9.43 -43.42 -0.41 -5.31 16 11 C 0.08 1.09 5.85 37.16 0.22 1.30 16 12 C 0.06 1.01 6.33 37.16 0.24 1.25 16 13 O -0.39 -8.86 10.30 -38.80 -0.40 -9.26 16 14 C 0.19 5.06 5.69 36.01 0.20 5.27 16 15 C -0.52 -14.64 9.43 -34.44 -0.32 -14.96 16 16 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -25.96 13.28 55.43 0.74 -25.22 16 19 Si 0.91 21.10 29.54 -169.99 -5.02 16.08 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 C 0.04 0.48 9.09 -39.20 -0.36 0.12 16 24 C -0.10 -1.09 6.86 -79.86 -0.55 -1.64 16 25 N 0.04 0.51 4.45 34.00 0.15 0.66 16 26 O -0.17 -2.45 18.44 -29.46 -0.54 -2.99 16 27 O -0.14 -1.87 17.23 -36.51 -0.63 -2.50 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.30 7.65 -51.93 -0.40 -0.10 16 32 H 0.07 0.26 7.65 -51.93 -0.40 -0.13 16 33 H 0.16 0.72 6.28 -52.48 -0.33 0.39 16 34 H 0.17 1.39 7.60 -52.49 -0.40 0.99 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 40 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 41 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.17 1.89 7.18 -52.49 -0.38 1.52 16 LS Contribution 377.52 15.07 5.69 5.69 Total: -1.00 -33.88 377.52 -7.74 -41.62 By element: Atomic # 1 Polarization: -0.22 SS G_CDS: -5.25 Total: -5.47 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -1.42 Total: -2.33 kcal Atomic # 7 Polarization: -25.45 SS G_CDS: 0.89 Total: -24.56 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -2.63 Total: -31.02 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.88 -7.74 -41.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815181592.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.793 kcal (2) G-P(sol) polarization free energy of solvation -33.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds