Wall clock time and date at job start Tue Mar 31 2020 23:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47101 * 2 1 4 4 C 1.35702 * 117.00085 * 179.97438 * 3 2 1 5 5 C 1.39034 * 119.90639 * 0.02562 * 4 3 2 6 6 C 1.37667 * 120.09494 * 180.02562 * 5 4 3 7 7 C 1.39810 * 119.90314 * 359.97402 * 6 5 4 8 8 C 1.47467 * 120.08874 * 179.97438 * 7 6 5 9 9 O 1.21507 * 120.00154 * 179.97438 * 8 7 6 10 10 O 1.34752 * 120.00313 * 0.02562 * 8 7 6 11 11 C 1.45198 * 117.00139 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46884 * 179.97438 * 11 10 8 13 13 O 1.42899 * 109.47405 * 64.99626 * 12 11 10 14 14 C 1.42901 * 113.99649 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.46545 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00589 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99844 * 180.02562 * 15 14 13 18 18 N 1.31502 * 119.99832 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99825 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46818 * 90.00144 * 19 17 15 21 21 H 1.48498 * 109.47067 * 209.99968 * 19 17 15 22 22 H 1.48496 * 109.47458 * 330.00345 * 19 17 15 23 23 C 1.39769 * 119.81717 * 0.25304 * 7 6 5 24 24 C 1.37703 * 119.90557 * 359.51600 * 23 7 6 25 25 N 1.48013 * 119.95449 * 180.23364 * 24 23 7 26 26 O 1.21802 * 119.99867 * 0.25109 * 25 24 23 27 27 O 1.21797 * 120.00238 * 180.25685 * 25 24 23 28 28 H 1.09004 * 109.46840 * 60.00139 * 1 2 3 29 29 H 1.08997 * 109.46970 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46834 * 300.00039 * 1 2 3 31 31 H 1.09006 * 109.47397 * 240.00284 * 2 1 3 32 32 H 1.09002 * 109.47575 * 119.99852 * 2 1 3 33 33 H 1.08003 * 119.95412 * 0.02562 * 5 4 3 34 34 H 1.08001 * 120.04466 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.47379 * 59.99489 * 11 10 8 36 36 H 1.09001 * 109.46782 * 299.99572 * 11 10 8 37 37 H 1.09002 * 109.46642 * 184.99901 * 12 11 10 38 38 H 1.09002 * 109.47069 * 304.99431 * 12 11 10 39 39 H 1.08990 * 109.47463 * 299.99806 * 14 13 12 40 40 H 1.08992 * 109.47069 * 60.00902 * 14 13 12 41 41 H 0.97004 * 120.00403 * 179.97438 * 18 17 15 42 42 H 1.07998 * 120.04609 * 179.72371 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3516 1.5251 0.0005 5 6 4.1968 0.4211 0.0005 6 6 5.5622 0.5970 0.0016 7 6 6.0986 1.8881 0.0022 8 6 7.5605 2.0813 0.0039 9 8 8.0250 3.2041 0.0039 10 8 8.3814 1.0127 0.0044 11 6 9.8089 1.2780 0.0067 12 6 10.5739 -0.0471 0.0076 13 8 10.3208 -0.7441 -1.2139 14 6 10.9924 -2.0014 -1.3155 15 6 10.6552 -2.6456 -2.6355 16 1 9.9946 -2.1449 -3.3277 17 6 11.1902 -3.8744 -2.9594 18 7 11.9943 -4.4844 -2.1164 19 14 10.7728 -4.6727 -4.5959 20 1 11.7622 -4.2498 -5.6195 21 1 10.8119 -6.1500 -4.4503 22 1 9.4127 -4.2528 -5.0189 23 6 5.2454 2.9952 0.0070 24 6 3.8808 2.8104 0.0011 25 7 2.9763 3.9820 0.0009 26 8 3.4392 5.1086 0.0014 27 8 1.7692 3.8195 0.0004 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.7816 -0.5759 -0.0003 34 1 6.2179 -0.2611 0.0020 35 1 10.0710 1.8490 0.8974 36 1 10.0735 1.8501 -0.8826 37 1 11.6420 0.1502 0.0989 38 1 10.2438 -0.6566 0.8489 39 1 12.0691 -1.8444 -1.2520 40 1 10.6713 -2.6516 -0.5018 41 1 12.3704 -5.3491 -2.3440 42 1 5.6558 3.9941 0.0120 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815181592.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:51 Heat of formation + Delta-G solvation = -167.400784 kcal Electronic energy + Delta-G solvation = -28365.219692 eV Core-core repulsion = 23892.925018 eV Total energy + Delta-G solvation = -4472.294674 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.37732 -41.93844 -41.22892 -39.16351 -38.60151 -37.62868 -37.47761 -34.94116 -33.77417 -32.80263 -32.00318 -31.21557 -29.03152 -27.69723 -26.08302 -24.86770 -24.52241 -23.66011 -23.01190 -22.18412 -20.76932 -19.84868 -19.38884 -18.73293 -18.71224 -18.58437 -17.95847 -17.80486 -17.33481 -17.18430 -17.03459 -16.38663 -16.24123 -15.90404 -15.41204 -15.08372 -14.81696 -14.60160 -14.30167 -14.08306 -13.75738 -13.40565 -13.35017 -13.28118 -13.16025 -12.91389 -12.72469 -12.70815 -12.60151 -12.46826 -12.30132 -12.07851 -12.05136 -11.84905 -11.81223 -11.77300 -11.27019 -10.98443 -10.88964 -10.25800 -10.01095 -8.31606 -6.43283 -1.31931 -0.78155 0.10020 0.20331 1.11812 1.37959 1.41798 1.43494 1.55430 1.61159 2.11761 2.34722 3.02879 3.04577 3.06908 3.21435 3.31200 3.49091 3.52828 3.91261 3.99409 4.02432 4.07899 4.11829 4.22865 4.35253 4.42105 4.50559 4.57079 4.67583 4.73248 4.77413 4.87980 4.92576 4.94032 5.15481 5.18731 5.23073 5.27579 5.55425 5.81506 5.96393 6.44837 6.46703 6.52496 6.80852 7.28407 8.80342 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011497 B = 0.002393 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.872610 B =11695.586053 C =13497.838643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.030 3.970 3 O -0.292 6.292 4 C 0.235 3.765 5 C -0.205 4.205 6 C 0.043 3.957 7 C -0.169 4.169 8 C 0.516 3.484 9 O -0.530 6.530 10 O -0.344 6.344 11 C 0.079 3.921 12 C 0.053 3.947 13 O -0.408 6.408 14 C 0.208 3.792 15 C -0.548 4.548 16 H 0.061 0.939 17 C 0.009 3.991 18 N -0.929 5.929 19 Si 0.979 3.021 20 H -0.271 1.271 21 H -0.275 1.275 22 H -0.263 1.263 23 C 0.044 3.956 24 C -0.111 4.111 25 N 0.040 4.960 26 O -0.204 6.204 27 O -0.144 6.144 28 H 0.061 0.939 29 H 0.106 0.894 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.200 0.800 34 H 0.179 0.821 35 H 0.112 0.888 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.062 0.938 39 H -0.010 1.010 40 H -0.007 1.007 41 H 0.271 0.729 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.187 6.943 7.801 22.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.043 4.043 3 O -0.202 6.202 4 C 0.184 3.816 5 C -0.223 4.223 6 C 0.025 3.975 7 C -0.171 4.171 8 C 0.362 3.638 9 O -0.421 6.421 10 O -0.260 6.260 11 C 0.006 3.994 12 C -0.023 4.023 13 O -0.328 6.328 14 C 0.133 3.867 15 C -0.585 4.585 16 H 0.079 0.921 17 C -0.190 4.190 18 N -0.568 5.568 19 Si 0.802 3.198 20 H -0.197 1.197 21 H -0.200 1.200 22 H -0.187 1.187 23 C 0.025 3.975 24 C -0.197 4.197 25 N 0.554 4.446 26 O -0.408 6.408 27 O -0.365 6.365 28 H 0.080 0.920 29 H 0.125 0.875 30 H 0.082 0.918 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.217 0.783 34 H 0.196 0.804 35 H 0.130 0.870 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.008 0.992 40 H 0.011 0.989 41 H 0.080 0.920 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -19.745 6.796 7.690 22.253 hybrid contribution 0.408 0.031 -0.403 0.575 sum -19.337 6.827 7.286 21.763 Atomic orbital electron populations 1.21831 0.91160 1.04481 1.03419 1.23597 0.97524 0.78764 1.04457 1.86395 1.15957 1.33772 1.84071 1.19069 0.85356 0.90913 0.86301 1.21713 0.92498 0.99368 1.08753 1.22028 0.95759 0.96714 0.83046 1.18739 0.89154 0.94343 1.14891 1.20897 0.87926 0.82592 0.72344 1.90856 1.78139 1.25834 1.47311 1.86585 1.20119 1.35945 1.83319 1.23295 0.74886 0.97050 1.04169 1.22653 0.98850 0.92262 0.88559 1.87859 1.72158 1.34864 1.37907 1.19860 0.90535 0.79926 0.96342 1.21378 1.29939 1.04186 1.03032 0.92096 1.25895 0.94370 0.97038 1.01714 1.70047 1.32308 1.16611 1.37851 0.85239 0.79128 0.77377 0.78029 1.19684 1.19963 1.18734 1.20800 0.88749 1.01585 0.86341 1.20314 0.90070 0.83645 1.25638 1.43457 1.01653 1.02203 0.97267 1.94556 1.80484 1.09749 1.56039 1.94554 0.96985 1.92583 1.52363 0.91996 0.87540 0.91797 0.88922 0.88586 0.78265 0.80400 0.87007 0.90800 0.90051 0.92004 0.99230 0.98910 0.92047 0.81682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 71.98 0.74 -0.24 16 2 C 0.03 0.21 5.45 71.98 0.39 0.61 16 3 O -0.29 -4.69 8.12 -69.02 -0.56 -5.25 16 4 C 0.24 3.99 6.68 22.64 0.15 4.14 16 5 C -0.20 -2.38 9.01 22.33 0.20 -2.18 16 6 C 0.04 0.66 9.61 22.52 0.22 0.88 16 7 C -0.17 -3.58 5.87 -20.09 -0.12 -3.70 16 8 C 0.52 13.79 7.89 70.25 0.55 14.35 16 9 O -0.53 -16.49 16.13 19.81 0.32 -16.17 16 10 O -0.34 -9.70 9.43 -53.96 -0.51 -10.21 16 11 C 0.08 2.17 5.85 71.98 0.42 2.59 16 12 C 0.05 1.73 6.33 71.98 0.46 2.19 16 13 O -0.41 -18.43 10.30 -145.56 -1.50 -19.93 16 14 C 0.21 10.96 5.69 71.24 0.41 11.37 16 15 C -0.55 -31.11 9.43 25.60 0.24 -30.87 16 16 H 0.06 3.44 7.81 -2.91 -0.02 3.42 16 17 C 0.01 0.47 5.46 84.66 0.46 0.94 16 18 N -0.93 -53.54 13.28 21.45 0.28 -53.26 16 19 Si 0.98 42.44 29.54 68.60 2.03 44.47 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 21 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 22 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 23 C 0.04 0.98 9.09 22.51 0.20 1.18 16 24 C -0.11 -2.48 6.86 36.43 0.25 -2.23 16 25 N 0.04 1.09 4.45 -46.33 -0.21 0.88 16 26 O -0.20 -6.00 18.44 18.88 0.35 -5.65 16 27 O -0.14 -4.01 17.23 25.63 0.44 -3.57 16 28 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.09 0.36 7.65 -2.38 -0.02 0.34 16 32 H 0.10 0.29 7.65 -2.39 -0.02 0.27 16 33 H 0.20 0.77 6.28 -2.91 -0.02 0.75 16 34 H 0.18 2.46 7.60 -2.91 -0.02 2.44 16 35 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 39 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 40 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 41 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 42 H 0.17 3.82 7.18 -2.91 -0.02 3.80 16 Total: -1.00 -73.93 377.52 6.28 -67.65 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: 1.05 Total: 2.02 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: 4.58 Total: -0.98 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: 0.08 Total: -52.38 kcal Atomic # 8 Polarization: -59.32 SS G_CDS: -1.46 Total: -60.78 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -73.93 6.28 -67.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815181592.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.753 kcal (2) G-P(sol) polarization free energy of solvation -73.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds