Wall clock time and date at job start Tue Mar 31 2020 23:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42899 * 109.47067 * 2 1 4 4 C 1.35642 * 116.99542 * 179.97438 * 3 2 1 5 5 C 1.38707 * 120.15670 * 359.97438 * 4 3 2 6 6 C 1.38050 * 120.08763 * 180.02562 * 5 4 3 7 7 C 1.38570 * 120.40558 * 0.02571 * 6 5 4 8 8 C 1.37761 * 120.30688 * 359.95012 * 7 6 5 9 9 N 1.48014 * 120.04814 * 180.02562 * 8 7 6 10 10 O 1.21801 * 120.00195 * 0.02562 * 9 8 7 11 11 O 1.21800 * 119.99974 * 179.97438 * 9 8 7 12 12 C 1.39772 * 119.90102 * 0.04793 * 8 7 6 13 13 C 1.47400 * 120.19569 * 180.25291 * 12 8 7 14 14 O 1.21509 * 119.99923 * 269.72346 * 13 12 8 15 15 O 1.34746 * 120.00287 * 89.72236 * 13 12 8 16 16 C 1.45196 * 117.00384 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47354 * 180.02562 * 16 15 13 18 18 O 1.42901 * 109.47395 * 64.99817 * 17 16 15 19 19 C 1.42898 * 114.00074 * 180.02562 * 18 17 16 20 20 C 1.50695 * 109.47158 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99855 * 0.02562 * 20 19 18 22 22 C 1.37875 * 120.00525 * 179.97438 * 20 19 18 23 23 N 1.31521 * 119.99383 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00512 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47216 * 59.99968 * 24 22 20 26 26 H 1.48500 * 109.47259 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47107 * 300.00366 * 24 22 20 28 28 H 1.08999 * 109.46809 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46720 * 300.00139 * 1 2 3 30 30 H 1.08996 * 109.46871 * 59.99873 * 1 2 3 31 31 H 1.09002 * 109.47141 * 239.99666 * 2 1 3 32 32 H 1.08996 * 109.46871 * 120.00127 * 2 1 3 33 33 H 1.07999 * 119.95499 * 359.97438 * 5 4 3 34 34 H 1.08002 * 119.79944 * 179.97438 * 6 5 4 35 35 H 1.08000 * 119.84811 * 179.97438 * 7 6 5 36 36 H 1.09005 * 109.47080 * 300.00139 * 16 15 13 37 37 H 1.08999 * 109.47384 * 59.99603 * 16 15 13 38 38 H 1.08999 * 109.47375 * 185.00019 * 17 16 15 39 39 H 1.09002 * 109.47218 * 304.99770 * 17 16 15 40 40 H 1.09007 * 109.46889 * 299.99684 * 19 18 17 41 41 H 1.08998 * 109.47154 * 59.99783 * 19 18 17 42 42 H 0.97005 * 119.99739 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3511 1.5249 0.0005 5 6 4.1990 0.4271 0.0016 6 6 5.5674 0.6096 0.0027 7 6 6.1046 1.8869 0.0033 8 6 5.2778 2.9888 0.0017 9 7 5.8578 4.3506 0.0018 10 8 7.0669 4.4976 0.0027 11 8 5.1260 5.3242 -0.0001 12 6 3.8905 2.8189 0.0006 13 6 2.9998 3.9934 -0.0067 14 8 2.6271 4.4797 1.0426 15 8 2.5988 4.5277 -1.1769 16 6 1.7227 5.6835 -1.1081 17 6 1.3763 6.1460 -2.5247 18 8 0.6141 5.1326 -3.1837 19 6 0.2372 5.4660 -4.5211 20 6 -0.5585 4.3330 -5.1161 21 1 -0.7569 3.4470 -4.5312 22 6 -1.0341 4.4277 -6.4067 23 7 -0.7928 5.5069 -7.1188 24 14 -2.0210 3.0236 -7.1440 25 1 -3.2405 2.7939 -6.3283 26 1 -2.4126 3.3700 -8.5339 27 1 -1.1941 1.7902 -7.1560 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.7881 -0.5716 0.0024 34 1 6.2232 -0.2485 0.0039 35 1 7.1765 2.0192 0.0045 36 1 0.8078 5.4150 -0.5800 37 1 2.2264 6.4900 -0.5752 38 1 0.7921 7.0649 -2.4744 39 1 2.2950 6.3296 -3.0819 40 1 -0.3705 6.3710 -4.5124 41 1 1.1325 5.6353 -5.1194 42 1 -1.1271 5.5734 -8.0270 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815241416.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:33 Heat of formation + Delta-G solvation = -165.010431 kcal Electronic energy + Delta-G solvation = -29695.741344 eV Core-core repulsion = 25223.550323 eV Total energy + Delta-G solvation = -4472.191021 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.58083 -42.02675 -41.05317 -39.04368 -38.76293 -37.90642 -37.50657 -34.98346 -33.58222 -33.14598 -31.84984 -31.16887 -29.09625 -28.14135 -25.83684 -24.94817 -24.59677 -23.73825 -23.03532 -22.50348 -20.73346 -20.01153 -19.26080 -18.85193 -18.74258 -18.49108 -18.15521 -18.11383 -17.51316 -17.33111 -16.80800 -16.49428 -16.31339 -16.14344 -15.31140 -15.10547 -14.74807 -14.49659 -14.21815 -13.85087 -13.77445 -13.56369 -13.45386 -13.32124 -13.24524 -12.97984 -12.92462 -12.72874 -12.56374 -12.55399 -12.48958 -12.35415 -12.07782 -11.89430 -11.85976 -11.81272 -11.34233 -10.93421 -10.84222 -10.33408 -9.86879 -8.34366 -6.47713 -1.56814 -0.38005 0.03568 0.07407 0.79410 1.37694 1.37960 1.43229 1.51874 1.77766 2.02725 2.32216 2.97637 2.99110 3.14899 3.31039 3.40266 3.50879 3.76669 3.78950 3.84472 3.98407 3.98763 4.00648 4.28122 4.33338 4.39808 4.45323 4.52786 4.65519 4.73998 4.79400 4.79776 4.85546 4.90791 5.10941 5.15161 5.16083 5.22032 5.50300 5.90910 5.96682 6.25095 6.35778 6.45397 6.73884 7.23631 8.77957 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010135 B = 0.003371 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2762.169989 B = 8304.162855 C = 9691.635870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.041 3.959 3 O -0.335 6.335 4 C 0.168 3.832 5 C -0.139 4.139 6 C -0.029 4.029 7 C -0.077 4.077 8 C 0.001 3.999 9 N 0.023 4.977 10 O -0.095 6.095 11 O -0.233 6.233 12 C -0.135 4.135 13 C 0.527 3.473 14 O -0.520 6.520 15 O -0.349 6.349 16 C 0.080 3.920 17 C 0.058 3.942 18 O -0.408 6.408 19 C 0.207 3.793 20 C -0.552 4.552 21 H 0.060 0.940 22 C 0.008 3.992 23 N -0.930 5.930 24 Si 0.985 3.015 25 H -0.264 1.264 26 H -0.273 1.273 27 H -0.264 1.264 28 H 0.115 0.885 29 H 0.058 0.942 30 H 0.045 0.955 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.202 0.798 34 H 0.219 0.781 35 H 0.194 0.806 36 H 0.074 0.926 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.052 0.948 40 H -0.007 1.007 41 H -0.013 1.013 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.930 -18.306 16.978 28.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.032 4.032 3 O -0.249 6.249 4 C 0.120 3.880 5 C -0.157 4.157 6 C -0.046 4.046 7 C -0.095 4.095 8 C -0.082 4.082 9 N 0.541 4.459 10 O -0.330 6.330 11 O -0.428 6.428 12 C -0.138 4.138 13 C 0.371 3.629 14 O -0.410 6.410 15 O -0.265 6.265 16 C 0.007 3.993 17 C -0.019 4.019 18 O -0.329 6.329 19 C 0.132 3.868 20 C -0.590 4.590 21 H 0.078 0.922 22 C -0.191 4.191 23 N -0.569 5.569 24 Si 0.807 3.193 25 H -0.189 1.189 26 H -0.198 1.198 27 H -0.188 1.188 28 H 0.134 0.866 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.111 0.889 32 H 0.123 0.877 33 H 0.219 0.781 34 H 0.236 0.764 35 H 0.212 0.788 36 H 0.093 0.907 37 H 0.123 0.877 38 H 0.107 0.893 39 H 0.070 0.930 40 H 0.011 0.989 41 H 0.004 0.996 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.059 -18.631 17.178 28.508 hybrid contribution -0.579 1.173 -0.573 1.429 sum 12.479 -17.458 16.604 27.133 Atomic orbital electron populations 1.21882 0.92552 1.04677 1.02510 1.23450 0.96576 0.78653 1.04483 1.86163 1.17620 1.34221 1.86861 1.18836 0.84815 0.90952 0.93399 1.22298 0.94373 0.99118 0.99931 1.21908 0.94590 0.96926 0.91205 1.21587 1.02582 0.89470 0.95911 1.20993 0.91201 0.82607 1.13391 1.43807 1.00984 1.03726 0.97424 1.94441 0.96755 1.92694 1.49140 1.94636 1.58927 1.31360 1.57873 1.18146 0.90956 0.91897 1.12814 1.20789 0.77769 0.82262 0.82079 1.90793 1.55188 1.61379 1.33625 1.86663 1.61116 1.45338 1.33339 1.23253 0.92754 0.86040 0.97261 1.22599 0.95809 0.92051 0.91420 1.87865 1.72605 1.43055 1.29340 1.19904 0.93116 0.95893 0.77858 1.21320 1.34961 1.03375 0.99299 0.92163 1.25993 0.97040 0.99544 0.96539 1.70070 1.46472 1.29431 1.10879 0.85209 0.78638 0.78088 0.77331 1.18887 1.19769 1.18849 0.86621 0.92330 0.93595 0.88866 0.87743 0.78122 0.76394 0.78850 0.90735 0.87704 0.89337 0.92977 0.98903 0.99570 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 10.28 71.98 0.74 -1.78 16 2 C 0.04 0.56 5.46 71.98 0.39 0.96 16 3 O -0.34 -8.56 9.59 -89.56 -0.86 -9.42 16 4 C 0.17 3.80 6.70 22.86 0.15 3.95 16 5 C -0.14 -1.29 9.03 22.34 0.20 -1.09 16 6 C -0.03 -0.14 10.03 22.30 0.22 0.08 16 7 C -0.08 -0.96 9.54 22.24 0.21 -0.75 16 8 C 0.00 0.03 6.88 36.63 0.25 0.28 16 9 N 0.02 0.72 4.45 -45.85 -0.20 0.51 16 10 O -0.10 -2.60 18.44 18.89 0.35 -2.26 16 11 O -0.23 -8.95 16.32 23.92 0.39 -8.56 16 12 C -0.14 -4.12 5.76 -20.02 -0.12 -4.23 16 13 C 0.53 20.79 4.30 70.23 0.30 21.09 16 14 O -0.52 -22.23 16.78 23.61 0.40 -21.84 16 15 O -0.35 -14.86 10.14 -52.17 -0.53 -15.39 16 16 C 0.08 3.11 5.85 71.98 0.42 3.54 16 17 C 0.06 2.43 6.33 71.98 0.46 2.88 16 18 O -0.41 -21.74 10.30 -145.57 -1.50 -23.24 16 19 C 0.21 12.18 5.69 71.23 0.41 12.58 16 20 C -0.55 -33.87 9.43 25.60 0.24 -33.62 16 21 H 0.06 3.66 7.81 -2.91 -0.02 3.63 16 22 C 0.01 0.44 5.46 84.65 0.46 0.90 16 23 N -0.93 -56.60 13.29 21.45 0.28 -56.32 16 24 Si 0.99 44.44 29.54 68.60 2.03 46.47 16 25 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 27 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 28 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.09 0.85 7.66 -2.39 -0.02 0.83 16 32 H 0.10 0.64 7.66 -2.39 -0.02 0.62 16 33 H 0.20 0.04 6.30 -2.91 -0.02 0.02 16 34 H 0.22 -1.36 8.06 -2.91 -0.02 -1.39 16 35 H 0.19 1.26 7.60 -2.91 -0.02 1.24 16 36 H 0.07 2.89 8.14 -2.38 -0.02 2.87 16 37 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 38 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 39 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 40 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 41 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 42 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 Total: -1.00 -90.30 377.58 5.76 -84.55 By element: Atomic # 1 Polarization: -0.35 SS G_CDS: 1.05 Total: 0.70 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: 4.35 Total: 4.79 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: 0.08 Total: -55.80 kcal Atomic # 8 Polarization: -78.95 SS G_CDS: -1.75 Total: -80.70 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -90.30 5.76 -84.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815241416.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.463 kcal (2) G-P(sol) polarization free energy of solvation -90.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds