Wall clock time and date at job start Tue Mar 31 2020 23:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 109.47054 * 2 1 4 4 S 1.81397 * 109.47056 * 120.00268 * 2 1 3 5 5 C 1.76201 * 103.00018 * 292.60022 * 4 2 1 6 6 C 1.38940 * 120.05202 * 275.38476 * 5 4 2 7 7 C 1.38100 * 119.93869 * 179.74789 * 6 5 4 8 8 C 1.38479 * 120.06129 * 0.52292 * 7 6 5 9 9 F 1.35096 * 119.94683 * 179.76717 * 8 7 6 10 10 C 1.38484 * 120.10371 * 359.74908 * 8 7 6 11 11 C 1.38094 * 120.05802 * 359.97438 * 10 8 7 12 12 C 1.50704 * 109.46793 * 240.00024 * 2 1 3 13 13 O 1.21281 * 120.00202 * 265.00255 * 12 2 1 14 14 N 1.34779 * 119.99747 * 85.00425 * 12 2 1 15 15 C 1.47414 * 125.65026 * 0.02562 * 14 12 2 16 16 C 1.54911 * 104.83467 * 204.09194 * 15 14 12 17 17 C 1.55156 * 101.58234 * 322.99374 * 16 15 14 18 18 O 1.42901 * 110.72341 * 277.13929 * 17 16 15 19 19 C 1.50694 * 110.72041 * 154.03855 * 17 16 15 20 20 H 1.08005 * 120.00089 * 241.45482 * 19 17 16 21 21 C 1.37875 * 120.00275 * 61.45744 * 19 17 16 22 22 N 1.31522 * 119.99708 * 359.97438 * 21 19 17 23 23 Si 1.86799 * 120.00445 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46882 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47139 * 119.99673 * 23 21 19 26 26 H 1.48495 * 109.47359 * 239.99752 * 23 21 19 27 27 C 1.47023 * 125.64390 * 179.71526 * 14 12 2 28 28 H 1.09001 * 109.46938 * 55.59853 * 1 2 3 29 29 H 1.08993 * 109.47556 * 175.59544 * 1 2 3 30 30 H 1.09000 * 109.47401 * 295.60197 * 1 2 3 31 31 H 1.07995 * 120.02844 * 0.02562 * 6 5 4 32 32 H 1.08004 * 119.97267 * 180.29479 * 7 6 5 33 33 H 1.08003 * 119.96787 * 179.97438 * 10 8 7 34 34 H 1.08002 * 120.02842 * 179.97438 * 11 10 8 35 35 H 1.08993 * 110.37254 * 322.93406 * 15 14 12 36 36 H 1.09010 * 110.36606 * 85.14845 * 15 14 12 37 37 H 1.08996 * 111.00081 * 81.06334 * 16 15 14 38 38 H 1.09002 * 111.00877 * 204.92156 * 16 15 14 39 39 H 0.96704 * 113.99379 * 298.54746 * 18 17 16 40 40 H 0.96995 * 119.99743 * 180.02562 * 22 21 19 41 41 H 1.09001 * 109.88359 * 298.39184 * 27 14 12 42 42 H 1.08999 * 109.88383 * 59.56160 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 16 2.1346 -0.8552 1.4811 5 6 1.6447 0.2206 2.7877 6 6 2.4475 1.2986 3.1395 7 6 2.0587 2.1433 4.1605 8 6 0.8752 1.9105 4.8407 9 9 0.4995 2.7355 5.8423 10 6 0.0762 0.8333 4.4957 11 6 0.4577 -0.0110 3.4717 12 6 2.0323 -0.7104 -1.2305 13 8 2.3206 -1.8872 -1.1761 14 7 2.1610 -0.0380 -2.3915 15 6 1.8487 1.3878 -2.5977 16 6 1.5589 1.5151 -4.1141 17 6 2.5917 0.5241 -4.7129 18 8 3.8720 1.1453 -4.8429 19 6 2.1180 -0.0002 -6.0439 20 1 1.9418 -1.0576 -6.1761 21 6 1.9094 0.8698 -7.0929 22 7 2.1234 2.1574 -6.9318 23 14 1.3228 0.2198 -8.7431 24 1 1.1587 -1.2540 -8.6645 25 1 0.0208 0.8457 -9.0872 26 1 2.3231 0.5509 -9.7894 27 6 2.6423 -0.6036 -3.6603 28 1 -0.3633 0.5806 -0.8479 29 1 -0.3634 -1.0245 -0.0789 30 1 -0.3634 0.4441 0.9267 31 1 3.3726 1.4784 2.6119 32 1 2.6801 2.9843 4.4312 33 1 -0.8462 0.6535 5.0280 34 1 -0.1657 -0.8511 3.2033 35 1 0.9700 1.6714 -2.0185 36 1 2.7016 2.0071 -2.3196 37 1 0.5400 1.2040 -4.3445 38 1 1.7441 2.5308 -4.4635 39 1 3.8795 1.9107 -5.4340 40 1 1.9764 2.7695 -7.6697 41 1 3.6663 -0.9584 -3.5433 42 1 1.9960 -1.4252 -3.9688 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823527733.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:26 Heat of formation + Delta-G solvation = -101.041081 kcal Electronic energy + Delta-G solvation = -26557.113807 eV Core-core repulsion = 22542.822366 eV Total energy + Delta-G solvation = -4014.291441 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.33386 -39.68223 -39.16277 -37.39117 -34.46378 -33.13863 -32.27322 -31.61874 -30.78190 -29.67951 -28.38365 -25.61887 -24.22525 -23.41615 -23.14178 -22.27535 -19.92758 -19.08588 -18.28572 -17.55855 -17.27281 -16.83553 -16.63628 -16.03389 -15.84093 -15.11920 -14.95603 -14.74427 -14.59354 -14.29367 -14.12286 -14.00548 -13.71048 -13.46706 -13.11483 -12.90989 -12.61256 -12.48549 -12.11676 -11.90179 -11.68239 -11.58262 -11.51220 -11.44782 -11.40277 -10.96237 -10.69812 -10.49974 -10.36887 -10.18452 -9.60268 -9.54359 -9.40975 -8.99072 -8.73282 -8.29837 -8.14175 -7.83503 -6.34574 -4.41957 0.36331 0.80201 1.43344 2.35002 2.90420 3.15385 3.16401 3.24815 3.29073 3.41129 3.79826 4.22507 4.29295 4.45448 4.59682 4.77431 4.83572 4.89542 4.93376 4.96897 5.28509 5.38815 5.42742 5.46189 5.57661 5.65425 5.66044 5.72089 5.80398 5.87049 5.88386 5.98461 6.12331 6.36218 6.37464 6.59390 6.80830 6.86463 7.21318 7.27431 7.67633 7.94064 7.95640 8.43606 8.61223 9.24098 9.33244 10.73047 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.023971 B = 0.002371 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.796171 B =11804.105837 C =12168.145482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.106 0.894 4 S -0.074 6.074 5 C -0.143 4.143 6 C -0.043 4.043 7 C -0.163 4.163 8 C 0.121 3.879 9 F -0.137 7.137 10 C -0.164 4.164 11 C -0.039 4.039 12 C 0.543 3.457 13 O -0.536 6.536 14 N -0.601 5.601 15 C 0.091 3.909 16 C -0.134 4.134 17 C 0.247 3.753 18 O -0.585 6.585 19 C -0.533 4.533 20 H 0.065 0.935 21 C 0.072 3.928 22 N -0.896 5.896 23 Si 0.903 3.097 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.281 1.281 27 C 0.124 3.876 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.382 0.618 40 H 0.268 0.732 41 H 0.063 0.937 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.378 2.742 19.460 20.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.230 4.230 3 H 0.124 0.876 4 S 0.159 5.841 5 C -0.254 4.254 6 C -0.063 4.063 7 C -0.183 4.183 8 C 0.101 3.899 9 F -0.115 7.115 10 C -0.185 4.185 11 C -0.060 4.060 12 C 0.329 3.671 13 O -0.414 6.414 14 N -0.334 5.334 15 C -0.032 4.032 16 C -0.172 4.172 17 C 0.207 3.793 18 O -0.394 6.394 19 C -0.572 4.572 20 H 0.083 0.917 21 C -0.130 4.130 22 N -0.535 5.535 23 Si 0.730 3.270 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.207 1.207 27 C 0.002 3.998 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.160 0.840 32 H 0.158 0.842 33 H 0.158 0.842 34 H 0.161 0.839 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.233 0.767 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.502 0.785 19.917 20.238 hybrid contribution -1.267 1.825 -1.103 2.480 sum -4.768 2.610 18.814 19.584 Atomic orbital electron populations 1.21984 0.90836 1.04101 1.02955 1.23533 1.01053 1.03244 0.95219 0.87626 1.86183 1.75358 1.28303 0.94209 1.22087 0.98731 1.01328 1.03264 1.21585 0.98623 0.91637 0.94470 1.21228 0.96628 1.02250 0.98219 1.17877 0.94746 0.89924 0.87333 1.91522 1.91229 1.70689 1.58108 1.21225 1.01356 0.95547 1.00333 1.21534 0.94234 0.97500 0.92685 1.19106 0.78768 0.86579 0.82658 1.90709 1.50921 1.15398 1.84322 1.48536 1.63509 1.11822 1.09486 1.22597 0.99188 0.81188 1.00193 1.23304 1.01195 1.02979 0.89764 1.19480 0.81039 0.87338 0.91445 1.86145 1.32774 1.49904 1.70586 1.21532 1.45430 0.94690 0.95526 0.91666 1.24986 0.94062 0.94775 0.99216 1.69700 1.49062 1.02042 1.32727 0.86355 0.78320 0.79340 0.82949 1.19555 1.20832 1.20735 1.22119 0.98949 0.97353 0.81371 0.90926 0.90593 0.91515 0.83961 0.84162 0.84184 0.83854 0.92125 0.91779 0.91347 0.89222 0.76739 0.92243 0.91839 0.90792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.08 37.16 0.34 -1.26 16 2 C -0.10 -1.35 2.42 -27.88 -0.07 -1.42 16 3 H 0.11 1.30 7.43 -51.93 -0.39 0.91 16 4 S -0.07 -0.98 20.39 -107.50 -2.19 -3.17 16 5 C -0.14 -1.47 5.21 -39.06 -0.20 -1.67 16 6 C -0.04 -0.39 9.79 -39.37 -0.39 -0.78 16 7 C -0.16 -1.36 10.02 -39.54 -0.40 -1.75 16 8 C 0.12 1.07 7.30 -39.40 -0.29 0.78 16 9 F -0.14 -1.29 17.26 2.25 0.04 -1.26 16 10 C -0.16 -1.32 10.02 -39.54 -0.40 -1.71 16 11 C -0.04 -0.34 9.08 -39.37 -0.36 -0.70 16 12 C 0.54 9.83 6.97 -10.98 -0.08 9.75 16 13 O -0.54 -11.44 16.47 5.56 0.09 -11.35 16 14 N -0.60 -11.35 3.33 -170.51 -0.57 -11.92 16 15 C 0.09 1.54 6.30 -2.53 -0.02 1.53 16 16 C -0.13 -2.73 5.47 -24.58 -0.13 -2.86 16 17 C 0.25 5.73 0.84 -89.93 -0.08 5.66 16 18 O -0.59 -14.17 13.06 -35.23 -0.46 -14.63 16 19 C -0.53 -13.54 8.23 -34.44 -0.28 -13.82 16 20 H 0.07 1.68 7.58 -52.48 -0.40 1.28 16 21 C 0.07 1.80 5.28 -17.82 -0.09 1.71 16 22 N -0.90 -22.26 10.67 55.43 0.59 -21.66 16 23 Si 0.90 19.81 29.54 -169.99 -5.02 14.78 16 24 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 27 C 0.12 2.70 6.23 -3.06 -0.02 2.68 16 28 H 0.07 0.82 7.00 -51.93 -0.36 0.45 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.63 6.95 -51.93 -0.36 0.27 16 31 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 33 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 34 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.06 0.85 6.46 -51.93 -0.34 0.51 16 36 H 0.06 1.06 8.14 -51.92 -0.42 0.63 16 37 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 38 H 0.09 1.91 7.53 -51.93 -0.39 1.51 16 39 H 0.38 9.24 7.46 45.56 0.34 9.58 16 40 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 41 H 0.06 1.45 8.07 -51.93 -0.42 1.03 16 42 H 0.07 1.65 7.67 -51.93 -0.40 1.25 16 LS Contribution 365.29 15.07 5.50 5.50 Total: -1.00 -28.16 365.29 -9.27 -37.43 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -4.80 Total: 10.15 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -2.46 Total: -3.88 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: 0.02 Total: -33.58 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.37 Total: -25.98 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.78 kcal Atomic # 16 Polarization: -0.98 SS G_CDS: -2.19 Total: -3.17 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.16 -9.27 -37.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823527733.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.613 kcal (2) G-P(sol) polarization free energy of solvation -28.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds