Wall clock time and date at job start Tue Mar 31 2020 23:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 109.47054 * 2 1 4 4 S 1.81397 * 109.47056 * 120.00268 * 2 1 3 5 5 C 1.76201 * 103.00018 * 292.60022 * 4 2 1 6 6 C 1.38940 * 120.05202 * 275.38476 * 5 4 2 7 7 C 1.38100 * 119.93869 * 179.74789 * 6 5 4 8 8 C 1.38479 * 120.06129 * 0.52292 * 7 6 5 9 9 F 1.35096 * 119.94683 * 179.76717 * 8 7 6 10 10 C 1.38484 * 120.10371 * 359.74908 * 8 7 6 11 11 C 1.38094 * 120.05802 * 359.97438 * 10 8 7 12 12 C 1.50704 * 109.46793 * 240.00024 * 2 1 3 13 13 O 1.21281 * 120.00202 * 265.00255 * 12 2 1 14 14 N 1.34779 * 119.99747 * 85.00425 * 12 2 1 15 15 C 1.47414 * 125.65026 * 0.02562 * 14 12 2 16 16 C 1.54911 * 104.83467 * 204.09194 * 15 14 12 17 17 C 1.55156 * 101.58234 * 322.99374 * 16 15 14 18 18 O 1.42901 * 110.72341 * 277.13929 * 17 16 15 19 19 C 1.50694 * 110.72041 * 154.03855 * 17 16 15 20 20 H 1.08005 * 120.00089 * 241.45482 * 19 17 16 21 21 C 1.37875 * 120.00275 * 61.45744 * 19 17 16 22 22 N 1.31522 * 119.99708 * 359.97438 * 21 19 17 23 23 Si 1.86799 * 120.00445 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46882 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47139 * 119.99673 * 23 21 19 26 26 H 1.48495 * 109.47359 * 239.99752 * 23 21 19 27 27 C 1.47023 * 125.64390 * 179.71526 * 14 12 2 28 28 H 1.09001 * 109.46938 * 55.59853 * 1 2 3 29 29 H 1.08993 * 109.47556 * 175.59544 * 1 2 3 30 30 H 1.09000 * 109.47401 * 295.60197 * 1 2 3 31 31 H 1.07995 * 120.02844 * 0.02562 * 6 5 4 32 32 H 1.08004 * 119.97267 * 180.29479 * 7 6 5 33 33 H 1.08003 * 119.96787 * 179.97438 * 10 8 7 34 34 H 1.08002 * 120.02842 * 179.97438 * 11 10 8 35 35 H 1.08993 * 110.37254 * 322.93406 * 15 14 12 36 36 H 1.09010 * 110.36606 * 85.14845 * 15 14 12 37 37 H 1.08996 * 111.00081 * 81.06334 * 16 15 14 38 38 H 1.09002 * 111.00877 * 204.92156 * 16 15 14 39 39 H 0.96704 * 113.99379 * 298.54746 * 18 17 16 40 40 H 0.96995 * 119.99743 * 180.02562 * 22 21 19 41 41 H 1.09001 * 109.88359 * 298.39184 * 27 14 12 42 42 H 1.08999 * 109.88383 * 59.56160 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 16 2.1346 -0.8552 1.4811 5 6 1.6447 0.2206 2.7877 6 6 2.4475 1.2986 3.1395 7 6 2.0587 2.1433 4.1605 8 6 0.8752 1.9105 4.8407 9 9 0.4995 2.7355 5.8423 10 6 0.0762 0.8333 4.4957 11 6 0.4577 -0.0110 3.4717 12 6 2.0323 -0.7104 -1.2305 13 8 2.3206 -1.8872 -1.1761 14 7 2.1610 -0.0380 -2.3915 15 6 1.8487 1.3878 -2.5977 16 6 1.5589 1.5151 -4.1141 17 6 2.5917 0.5241 -4.7129 18 8 3.8720 1.1453 -4.8429 19 6 2.1180 -0.0002 -6.0439 20 1 1.9418 -1.0576 -6.1761 21 6 1.9094 0.8698 -7.0929 22 7 2.1234 2.1574 -6.9318 23 14 1.3228 0.2198 -8.7431 24 1 1.1587 -1.2540 -8.6645 25 1 0.0208 0.8457 -9.0872 26 1 2.3231 0.5509 -9.7894 27 6 2.6423 -0.6036 -3.6603 28 1 -0.3633 0.5806 -0.8479 29 1 -0.3634 -1.0245 -0.0789 30 1 -0.3634 0.4441 0.9267 31 1 3.3726 1.4784 2.6119 32 1 2.6801 2.9843 4.4312 33 1 -0.8462 0.6535 5.0280 34 1 -0.1657 -0.8511 3.2033 35 1 0.9700 1.6714 -2.0185 36 1 2.7016 2.0071 -2.3196 37 1 0.5400 1.2040 -4.3445 38 1 1.7441 2.5308 -4.4635 39 1 3.8795 1.9107 -5.4340 40 1 1.9764 2.7695 -7.6697 41 1 3.6663 -0.9584 -3.5433 42 1 1.9960 -1.4252 -3.9688 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823527733.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:25 Heat of formation + Delta-G solvation = -117.108772 kcal Electronic energy + Delta-G solvation = -26557.810554 eV Core-core repulsion = 22542.822366 eV Total energy + Delta-G solvation = -4014.988188 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.01513 -41.19992 -39.82500 -39.05916 -36.16980 -34.29681 -34.20588 -32.25460 -31.51937 -31.26313 -30.04484 -27.28340 -25.53817 -24.10889 -23.88803 -23.66856 -21.63824 -20.50383 -19.20828 -19.01878 -18.49315 -18.08859 -17.34403 -17.20057 -16.92797 -16.68730 -16.33700 -16.10585 -15.84806 -15.61380 -15.30004 -14.81873 -14.60316 -14.47986 -14.32202 -14.08340 -13.93183 -13.76088 -13.48821 -13.23297 -13.16209 -13.12382 -13.00429 -12.68457 -12.60547 -12.39996 -12.26617 -12.13100 -11.99150 -11.31373 -11.23818 -10.97864 -10.63372 -10.18407 -10.15396 -9.75178 -9.69598 -8.84653 -8.25246 -6.38994 -0.39545 0.17574 0.51311 1.38554 1.40052 1.45147 1.54436 1.57463 1.97462 2.39593 2.47517 3.00336 3.15240 3.31980 3.68560 3.76879 3.83322 3.87999 3.94485 3.95876 4.20950 4.23599 4.25056 4.36405 4.53396 4.59008 4.61476 4.65598 4.69292 4.87882 4.88859 5.02545 5.06677 5.07937 5.14326 5.19112 5.22596 5.45116 5.53106 5.72648 5.76183 6.07365 6.47369 6.64545 6.98044 7.30949 7.40297 8.80817 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.023971 B = 0.002371 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.796171 B =11804.105837 C =12168.145482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 H 0.124 0.876 4 S -0.112 6.112 5 C -0.147 4.147 6 C -0.047 4.047 7 C -0.160 4.160 8 C 0.113 3.887 9 F -0.141 7.141 10 C -0.158 4.158 11 C -0.039 4.039 12 C 0.540 3.460 13 O -0.574 6.574 14 N -0.604 5.604 15 C 0.100 3.900 16 C -0.124 4.124 17 C 0.236 3.764 18 O -0.593 6.593 19 C -0.561 4.561 20 H 0.050 0.950 21 C 0.039 3.961 22 N -0.904 5.904 23 Si 0.957 3.043 24 H -0.277 1.277 25 H -0.275 1.275 26 H -0.279 1.279 27 C 0.130 3.870 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.149 0.851 32 H 0.158 0.842 33 H 0.162 0.838 34 H 0.155 0.845 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.380 0.620 40 H 0.272 0.728 41 H 0.044 0.956 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.685 4.203 21.003 22.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.219 4.219 3 H 0.142 0.858 4 S 0.122 5.878 5 C -0.259 4.259 6 C -0.067 4.067 7 C -0.181 4.181 8 C 0.093 3.907 9 F -0.120 7.120 10 C -0.179 4.179 11 C -0.060 4.060 12 C 0.328 3.672 13 O -0.455 6.455 14 N -0.336 5.336 15 C -0.021 4.021 16 C -0.163 4.163 17 C 0.196 3.804 18 O -0.402 6.402 19 C -0.599 4.599 20 H 0.068 0.932 21 C -0.163 4.163 22 N -0.543 5.543 23 Si 0.783 3.217 24 H -0.202 1.202 25 H -0.200 1.200 26 H -0.205 1.205 27 C 0.007 3.993 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.167 0.833 32 H 0.176 0.824 33 H 0.179 0.821 34 H 0.173 0.827 35 H 0.119 0.881 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.100 0.900 39 H 0.230 0.770 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.815 2.266 21.471 22.121 hybrid contribution -0.829 1.361 -1.523 2.204 sum -5.644 3.627 19.948 21.046 Atomic orbital electron populations 1.21989 0.88937 1.03945 1.04497 1.23451 1.02338 1.03189 0.92952 0.85816 1.86370 1.75986 1.29925 0.95557 1.21953 0.99866 1.01454 1.02581 1.21672 0.98811 0.91432 0.94832 1.21396 0.96642 1.02450 0.97562 1.18082 0.95121 0.90148 0.87315 1.91516 1.91283 1.70859 1.58305 1.21426 1.01899 0.94737 0.99820 1.21656 0.93820 0.97908 0.92591 1.19914 0.77611 0.86294 0.83411 1.90686 1.52387 1.17352 1.85031 1.48569 1.63605 1.12558 1.08873 1.22622 1.01298 0.80065 0.98159 1.23073 0.99636 1.01430 0.92119 1.19602 0.81248 0.88402 0.91187 1.86131 1.33698 1.49869 1.70467 1.21719 1.46652 0.94253 0.97278 0.93187 1.25546 0.94060 0.95091 1.01577 1.69746 1.48694 1.02367 1.33446 0.85525 0.78107 0.78391 0.79674 1.20198 1.20012 1.20503 1.21817 0.97703 0.96853 0.82953 0.90325 0.91533 0.89052 0.83324 0.82397 0.82056 0.82701 0.88138 0.90764 0.92190 0.90004 0.77012 0.91888 0.93752 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.08 71.98 0.65 -2.09 16 2 C -0.09 -2.25 2.42 29.85 0.07 -2.18 16 3 H 0.12 2.68 7.43 -2.39 -0.02 2.66 16 4 S -0.11 -2.84 20.39 -56.49 -1.15 -3.99 16 5 C -0.15 -2.71 5.21 22.61 0.12 -2.59 16 6 C -0.05 -0.75 9.79 22.41 0.22 -0.53 16 7 C -0.16 -2.24 10.02 22.29 0.22 -2.01 16 8 C 0.11 1.69 7.30 22.39 0.16 1.85 16 9 F -0.14 -2.32 17.26 44.97 0.78 -1.54 16 10 C -0.16 -2.06 10.02 22.29 0.22 -1.84 16 11 C -0.04 -0.58 9.08 22.40 0.20 -0.38 16 12 C 0.54 19.29 6.97 87.66 0.61 19.90 16 13 O -0.57 -24.98 16.47 -3.03 -0.05 -25.03 16 14 N -0.60 -22.57 3.33 -811.77 -2.70 -25.27 16 15 C 0.10 3.21 6.30 86.86 0.55 3.76 16 16 C -0.12 -4.99 5.47 31.99 0.18 -4.81 16 17 C 0.24 11.10 0.84 -10.35 -0.01 11.09 16 18 O -0.59 -29.15 13.06 -148.98 -1.95 -31.10 16 19 C -0.56 -29.06 8.23 25.60 0.21 -28.85 16 20 H 0.05 2.66 7.58 -2.91 -0.02 2.64 16 21 C 0.04 1.94 5.28 84.65 0.45 2.39 16 22 N -0.90 -44.61 10.67 21.45 0.23 -44.38 16 23 Si 0.96 40.60 29.54 68.60 2.03 42.63 16 24 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 26 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 27 C 0.13 5.83 6.23 86.73 0.54 6.37 16 28 H 0.08 1.51 7.00 -2.39 -0.02 1.50 16 29 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.09 1.42 6.95 -2.39 -0.02 1.41 16 31 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 32 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 33 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 34 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 35 H 0.10 2.45 6.46 -2.39 -0.02 2.44 16 36 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 37 H 0.06 2.49 8.04 -2.39 -0.02 2.47 16 38 H 0.08 3.42 7.53 -2.39 -0.02 3.40 16 39 H 0.38 18.61 7.46 -74.05 -0.55 18.06 16 40 H 0.27 12.74 8.31 -92.71 -0.77 11.97 16 41 H 0.04 2.12 8.07 -2.39 -0.02 2.10 16 42 H 0.06 2.83 7.67 -2.39 -0.02 2.81 16 Total: -1.00 -61.40 365.29 2.09 -59.32 By element: Atomic # 1 Polarization: 28.78 SS G_CDS: 0.50 Total: 29.28 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 4.40 Total: 0.08 kcal Atomic # 7 Polarization: -67.18 SS G_CDS: -2.47 Total: -69.65 kcal Atomic # 8 Polarization: -54.13 SS G_CDS: -2.00 Total: -56.13 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.78 Total: -1.54 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Atomic # 16 Polarization: -2.84 SS G_CDS: -1.15 Total: -3.99 kcal Total: -61.40 2.09 -59.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823527733.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.791 kcal (2) G-P(sol) polarization free energy of solvation -61.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds