Wall clock time and date at job start Tue Mar 31 2020 23:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47736 * 2 1 4 4 C 1.50698 * 109.46848 * 239.99963 * 2 1 3 5 5 O 1.21290 * 119.99989 * 239.99875 * 4 2 1 6 6 N 1.34779 * 120.00125 * 59.72662 * 4 2 1 7 7 C 1.39998 * 120.00050 * 176.30376 * 6 4 2 8 8 C 1.39198 * 120.49229 * 33.91687 * 7 6 4 9 9 C 1.38566 * 118.37576 * 179.97438 * 8 7 6 10 10 C 1.38220 * 119.26330 * 359.97438 * 9 8 7 11 11 N 1.31894 * 120.92923 * 0.02685 * 10 9 8 12 12 C 1.31899 * 121.77959 * 359.67893 * 11 10 9 13 13 Cl 1.73591 * 119.68339 * 180.31515 * 12 11 10 14 14 N 1.46904 * 109.47137 * 120.00418 * 2 1 3 15 15 C 1.48534 * 111.00170 * 177.60187 * 14 2 1 16 16 C 1.54934 * 103.22842 * 159.71650 * 15 14 2 17 17 C 1.54591 * 102.92451 * 322.58957 * 16 15 14 18 18 O 1.42907 * 110.38892 * 262.99741 * 17 16 15 19 19 C 1.50694 * 110.31242 * 140.87045 * 17 16 15 20 20 H 1.07998 * 120.00083 * 248.40082 * 19 17 16 21 21 C 1.37883 * 119.99886 * 68.40659 * 19 17 16 22 22 N 1.31514 * 119.99908 * 354.47127 * 21 19 17 23 23 Si 1.86797 * 120.00014 * 174.47089 * 21 19 17 24 24 H 1.48499 * 109.47205 * 94.99830 * 23 21 19 25 25 H 1.48503 * 109.47186 * 214.99917 * 23 21 19 26 26 H 1.48502 * 109.47027 * 334.99852 * 23 21 19 27 27 C 1.47900 * 110.99740 * 294.99740 * 14 2 1 28 28 H 1.08997 * 109.47008 * 179.97438 * 1 2 3 29 29 H 1.09009 * 109.46538 * 300.00058 * 1 2 3 30 30 H 1.09001 * 109.46884 * 59.99474 * 1 2 3 31 31 H 0.97005 * 119.99806 * 356.30696 * 6 4 2 32 32 H 1.07996 * 120.81333 * 359.97438 * 8 7 6 33 33 H 1.08003 * 120.36704 * 179.97438 * 9 8 7 34 34 H 1.07994 * 119.53178 * 179.97438 * 10 9 8 35 35 H 1.09002 * 110.66377 * 278.15781 * 15 14 2 36 36 H 1.09003 * 110.66223 * 41.28040 * 15 14 2 37 37 H 1.08995 * 110.72221 * 204.22416 * 16 15 14 38 38 H 1.09005 * 110.72197 * 80.94522 * 16 15 14 39 39 H 0.96697 * 114.00164 * 295.76015 * 18 17 16 40 40 H 0.97001 * 119.99816 * 180.02562 * 22 21 19 41 41 H 1.09003 * 109.91849 * 333.50842 * 27 14 2 42 42 H 1.08997 * 109.92209 * 94.60550 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6966 -1.1192 6 7 1.7021 -0.2532 -2.4546 7 6 2.2310 -0.8659 -3.5968 8 6 2.4754 -2.2362 -3.6143 9 6 2.9990 -2.7971 -4.7681 10 6 3.2593 -1.9852 -5.8560 11 7 3.0168 -0.6896 -5.8085 12 6 2.5136 -0.1161 -4.7326 13 17 2.2082 1.5927 -4.7325 14 7 2.0197 -0.6926 1.1994 15 6 3.5033 -0.7629 1.2051 16 6 3.8408 -1.0124 2.6965 17 6 2.7915 -0.1518 3.4370 18 8 3.3517 1.1110 3.8026 19 6 2.2912 -0.8750 4.6608 20 1 1.2728 -1.2323 4.6982 21 6 3.1338 -1.0806 5.7327 22 7 4.4021 -0.7435 5.6463 23 14 2.4739 -1.8378 7.3076 24 1 2.7151 -3.3030 7.2914 25 1 3.1665 -1.2351 8.4748 26 1 1.0154 -1.5773 7.4088 27 6 1.6462 0.0440 2.4263 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 1.0980 0.5005 -2.5441 32 1 2.2622 -2.8472 -2.7497 33 1 3.2015 -3.8568 -4.8168 34 1 3.6678 -2.4177 -6.7573 35 1 3.8516 -1.5912 0.5880 36 1 3.9343 0.1790 0.8655 37 1 4.8504 -0.6717 2.9258 38 1 3.7218 -2.0664 2.9478 39 1 4.0783 1.0500 4.4378 40 1 4.9949 -0.8884 6.4002 41 1 1.5267 1.1038 2.2013 42 1 0.7170 -0.3564 2.8316 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829982878.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:32 Heat of formation + Delta-G solvation = -59.150502 kcal Electronic energy + Delta-G solvation = -27401.364811 eV Core-core repulsion = 23406.766138 eV Total energy + Delta-G solvation = -3994.598674 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.15595 -40.86578 -39.61818 -37.77636 -36.86576 -36.27166 -34.09400 -33.82585 -33.04099 -31.01721 -29.94957 -29.28337 -26.84799 -25.62828 -24.82167 -23.82623 -22.41421 -21.42753 -20.95548 -19.35668 -19.09967 -18.33736 -18.23486 -17.48811 -17.05820 -16.88561 -16.32302 -16.10151 -15.79842 -15.56038 -15.44154 -15.01126 -14.66311 -14.47375 -14.24986 -13.90295 -13.58582 -13.43224 -13.35533 -13.10869 -13.06985 -12.84203 -12.73846 -12.57153 -12.46032 -12.37385 -12.30435 -12.10774 -12.01770 -11.86523 -11.18333 -11.06760 -10.74779 -10.63634 -10.42760 -10.05456 -9.48947 -9.36603 -8.20786 -6.33284 -0.25324 0.05085 0.67640 1.37685 1.41252 1.43577 1.53763 1.64431 2.40342 2.58352 2.93138 3.07946 3.39304 3.45369 3.66804 3.84972 3.94830 3.99477 4.06025 4.09136 4.27408 4.33102 4.34350 4.44949 4.58619 4.69373 4.77045 4.87674 4.88078 5.04658 5.06912 5.10203 5.23583 5.29668 5.38990 5.52869 5.59569 5.76510 5.90153 5.97206 6.14343 6.22742 6.60773 6.70635 6.91221 7.36598 7.43315 8.85430 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.023144 B = 0.002614 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.523305 B =10710.344107 C =11096.330975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.053 3.947 3 H 0.080 0.920 4 C 0.529 3.471 5 O -0.527 6.527 6 N -0.656 5.656 7 C 0.110 3.890 8 C -0.084 4.084 9 C -0.136 4.136 10 C 0.099 3.901 11 N -0.481 5.481 12 C 0.132 3.868 13 Cl -0.027 7.027 14 N -0.498 5.498 15 C 0.046 3.954 16 C -0.112 4.112 17 C 0.227 3.773 18 O -0.600 6.600 19 C -0.551 4.551 20 H 0.059 0.941 21 C 0.024 3.976 22 N -0.917 5.917 23 Si 0.961 3.039 24 H -0.279 1.279 25 H -0.281 1.281 26 H -0.269 1.269 27 C 0.068 3.932 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.425 0.575 32 H 0.150 0.850 33 H 0.178 0.822 34 H 0.202 0.798 35 H 0.087 0.913 36 H 0.027 0.973 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.378 0.622 40 H 0.268 0.732 41 H 0.045 0.955 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.308 -0.128 -22.108 22.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.059 4.059 3 H 0.097 0.903 4 C 0.317 3.683 5 O -0.401 6.401 6 N -0.304 5.304 7 C 0.011 3.989 8 C -0.112 4.112 9 C -0.156 4.156 10 C -0.059 4.059 11 N -0.192 5.192 12 C -0.034 4.034 13 Cl 0.002 6.998 14 N -0.223 5.223 15 C -0.082 4.082 16 C -0.151 4.151 17 C 0.187 3.813 18 O -0.410 6.410 19 C -0.589 4.589 20 H 0.077 0.923 21 C -0.175 4.175 22 N -0.558 5.558 23 Si 0.787 3.213 24 H -0.205 1.205 25 H -0.206 1.206 26 H -0.194 1.194 27 C -0.060 4.060 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.114 0.886 31 H 0.265 0.735 32 H 0.168 0.832 33 H 0.196 0.804 34 H 0.219 0.781 35 H 0.105 0.895 36 H 0.045 0.955 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.229 0.771 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.212 -0.406 -22.999 23.826 hybrid contribution 0.446 0.320 2.225 2.291 sum -5.766 -0.086 -20.774 21.560 Atomic orbital electron populations 1.21832 0.89331 1.03818 1.04428 1.21959 0.99502 0.96262 0.88202 0.90289 1.20864 0.78931 0.84213 0.84320 1.90658 1.37126 1.26068 1.86245 1.43382 1.48128 1.35862 1.02999 1.18407 1.00680 0.92648 0.87149 1.21955 0.97037 0.92158 1.00045 1.22580 0.97351 1.03778 0.91871 1.23288 0.96036 0.86509 1.00081 1.67032 1.11923 1.14612 1.25603 1.21515 1.02317 0.87893 0.91714 1.98399 1.93700 1.09475 1.98275 1.64740 1.10290 1.46864 1.00438 1.23243 0.87898 0.99606 0.97434 1.22805 0.98947 0.99918 0.93407 1.19595 0.89091 0.80904 0.91726 1.86053 1.55491 1.32933 1.66522 1.21969 0.98386 1.37066 1.01455 0.92326 1.25732 0.94867 0.95231 1.01717 1.69711 1.04332 1.49282 1.32465 0.85502 0.78653 0.78208 0.78973 1.20467 1.20649 1.19366 1.22706 0.98444 0.95684 0.89140 0.91548 0.90696 0.88563 0.73504 0.83235 0.80414 0.78087 0.89484 0.95481 0.93686 0.93683 0.77112 0.92229 0.93640 0.89951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.07 71.98 0.65 -2.15 16 2 C 0.05 1.46 2.20 44.17 0.10 1.56 16 3 H 0.08 2.07 7.96 -2.39 -0.02 2.05 16 4 C 0.53 14.35 6.74 87.66 0.59 14.94 16 5 O -0.53 -17.74 11.32 -3.06 -0.03 -17.78 16 6 N -0.66 -13.60 4.99 -303.10 -1.51 -15.11 16 7 C 0.11 2.40 6.33 38.25 0.24 2.65 16 8 C -0.08 -1.75 8.81 22.58 0.20 -1.55 16 9 C -0.14 -1.97 10.10 22.34 0.23 -1.75 16 10 C 0.10 1.43 11.17 84.68 0.95 2.38 16 11 N -0.48 -9.95 10.33 -186.22 -1.92 -11.88 16 12 C 0.13 2.84 7.29 84.87 0.62 3.46 16 13 Cl -0.03 -0.52 28.10 -2.72 -0.08 -0.59 16 14 N -0.50 -18.63 4.93 -862.22 -4.25 -22.88 16 15 C 0.05 1.89 5.49 86.65 0.48 2.36 16 16 C -0.11 -5.47 5.62 31.80 0.18 -5.29 16 17 C 0.23 11.37 1.00 -10.66 -0.01 11.36 16 18 O -0.60 -31.63 12.92 -148.98 -1.92 -33.56 16 19 C -0.55 -29.79 8.08 25.60 0.21 -29.58 16 20 H 0.06 3.14 7.37 -2.91 -0.02 3.12 16 21 C 0.02 1.28 5.26 84.66 0.45 1.73 16 22 N -0.92 -50.01 10.92 21.45 0.23 -49.77 16 23 Si 0.96 42.68 29.54 68.60 2.03 44.71 16 24 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 25 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 26 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 27 C 0.07 2.81 5.01 86.45 0.43 3.25 16 28 H 0.07 1.46 8.14 -2.39 -0.02 1.45 16 29 H 0.07 1.59 7.35 -2.38 -0.02 1.58 16 30 H 0.10 1.23 7.47 -2.39 -0.02 1.21 16 31 H 0.43 6.52 7.35 -92.70 -0.68 5.84 16 32 H 0.15 3.56 6.26 -2.91 -0.02 3.55 16 33 H 0.18 1.39 8.06 -2.91 -0.02 1.37 16 34 H 0.20 1.35 8.06 -2.91 -0.02 1.33 16 35 H 0.09 3.65 6.19 -2.39 -0.01 3.64 16 36 H 0.03 1.10 8.02 -2.39 -0.02 1.08 16 37 H 0.04 2.31 8.08 -2.39 -0.02 2.29 16 38 H 0.04 2.36 7.86 -2.38 -0.02 2.34 16 39 H 0.38 20.63 6.93 -74.06 -0.51 20.12 16 40 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 41 H 0.05 1.79 7.47 -2.39 -0.02 1.77 16 42 H 0.08 3.39 7.41 -2.39 -0.02 3.38 16 Total: -1.00 -66.00 354.83 -2.27 -68.27 By element: Atomic # 1 Polarization: 35.34 SS G_CDS: -0.11 Total: 35.23 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 5.30 Total: 3.35 kcal Atomic # 7 Polarization: -92.19 SS G_CDS: -7.45 Total: -99.64 kcal Atomic # 8 Polarization: -49.38 SS G_CDS: -1.96 Total: -51.34 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -0.08 Total: -0.59 kcal Total: -66.00 -2.27 -68.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829982878.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.123 kcal (2) G-P(sol) polarization free energy of solvation -66.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds