Wall clock time and date at job start Tue Mar 31 2020 23:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 S 1.81403 * 109.47094 * 2 1 4 4 O 1.42099 * 113.53968 * 298.45843 * 3 2 1 5 5 C 1.81395 * 107.17135 * 64.66143 * 3 2 1 6 6 C 1.53001 * 109.47049 * 53.79826 * 5 3 2 7 7 N 1.49358 * 107.52328 * 180.02562 * 3 2 1 8 8 S 1.65599 * 120.00134 * 179.97438 * 7 3 2 9 9 O 1.42105 * 106.40276 * 66.45620 * 8 7 3 10 10 O 1.42097 * 106.39983 * 293.53689 * 8 7 3 11 11 N 1.65598 * 107.21794 * 179.97438 * 8 7 3 12 12 C 1.46966 * 120.59135 * 90.00074 * 11 8 7 13 13 C 1.53376 * 108.63466 * 235.24584 * 12 11 8 14 14 N 1.46968 * 108.63457 * 310.57917 * 13 12 11 15 15 C 1.36937 * 120.59055 * 235.20386 * 14 13 12 16 16 H 1.07997 * 120.00034 * 28.27851 * 15 14 13 17 17 C 1.38806 * 119.99615 * 208.56371 * 15 14 13 18 18 N 1.31620 * 120.00437 * 17.30811 * 17 15 14 19 19 Si 1.86800 * 119.99904 * 197.31053 * 17 15 14 20 20 H 1.48502 * 109.47086 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47060 * 119.99742 * 19 17 15 22 22 H 1.48496 * 109.47229 * 239.99810 * 19 17 15 23 23 C 1.46960 * 118.81400 * 55.47579 * 14 13 12 24 24 C 1.46965 * 120.59734 * 270.02180 * 11 8 7 25 25 H 1.09006 * 109.47124 * 300.00112 * 1 2 3 26 26 H 1.08998 * 109.47199 * 59.99953 * 1 2 3 27 27 H 1.08992 * 109.47146 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47110 * 240.00160 * 2 1 3 29 29 H 1.09002 * 109.47636 * 119.99452 * 2 1 3 30 30 H 1.08999 * 109.47825 * 173.80137 * 5 3 2 31 31 H 1.09004 * 109.47231 * 293.80642 * 5 3 2 32 32 H 1.08997 * 109.46773 * 60.00589 * 6 5 3 33 33 H 1.09001 * 109.47157 * 180.02562 * 6 5 3 34 34 H 1.09001 * 109.47259 * 300.00267 * 6 5 3 35 35 H 1.08997 * 109.60957 * 115.50413 * 12 11 8 36 36 H 1.08992 * 109.61068 * 354.99320 * 12 11 8 37 37 H 1.08998 * 109.60957 * 190.83139 * 13 12 11 38 38 H 1.09001 * 109.60896 * 70.31950 * 13 12 11 39 39 H 0.96998 * 120.00790 * 179.97438 * 18 17 15 40 40 H 1.09011 * 109.61027 * 64.26353 * 23 14 13 41 41 H 1.09000 * 109.60956 * 184.77581 * 23 14 13 42 42 H 1.08998 * 109.61178 * 244.50139 * 24 11 8 43 43 H 1.08998 * 109.60934 * 5.00879 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.7385 2.4523 -1.1453 5 6 1.6138 2.4624 1.5664 6 6 2.0865 1.5916 2.7322 7 7 3.6273 1.6595 -0.0006 8 16 4.5036 3.0647 -0.0014 9 8 4.2545 3.6937 1.2482 10 8 4.2535 3.6928 -1.2513 11 7 6.1052 2.6436 -0.0013 12 6 6.8285 2.4527 -1.2664 13 6 7.4558 1.0531 -1.2659 14 7 8.1791 0.8631 -0.0007 15 6 9.5033 0.5141 -0.0007 16 1 10.1383 0.8045 -0.8246 17 6 10.0279 -0.2181 1.0554 18 7 9.2232 -0.8644 1.8722 19 14 11.8762 -0.2861 1.3177 20 1 12.5547 0.5187 0.2702 21 1 12.2067 0.2641 2.6569 22 1 12.3365 -1.6954 1.2341 23 6 7.4544 1.0485 1.2642 24 6 6.8286 2.4536 1.2638 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 2.0511 3.4569 1.6551 31 1 0.5268 2.5402 1.5884 32 1 3.1735 1.5139 2.7103 33 1 1.7732 2.0433 3.6735 34 1 1.6492 0.5971 2.6436 35 1 7.6122 3.2048 -1.3567 36 1 6.1342 2.5422 -2.1018 37 1 8.1500 0.9632 -2.1014 38 1 6.6720 0.3009 -1.3557 39 1 9.5898 -1.3763 2.6100 40 1 6.6705 0.2960 1.3504 41 1 8.1478 0.9554 2.1001 42 1 7.6123 3.2058 1.3536 43 1 6.1344 2.5435 2.0992 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866696044.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:21 Heat of formation + Delta-G solvation = -36.296905 kcal Electronic energy + Delta-G solvation = -27435.940946 eV Core-core repulsion = 23579.820937 eV Total energy + Delta-G solvation = -3856.120010 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -37.40477 -36.98626 -36.62459 -35.51348 -34.31630 -33.78505 -33.42006 -32.43589 -30.95071 -29.98195 -26.25543 -24.85291 -24.13304 -23.11755 -22.69602 -20.42012 -19.29605 -18.26355 -17.57550 -17.22472 -16.90770 -16.51128 -15.89602 -15.59181 -15.14411 -14.70193 -14.52363 -13.94282 -13.87798 -13.57434 -13.55548 -13.46538 -13.33566 -13.11086 -12.80340 -12.66050 -12.53825 -12.19804 -12.06570 -11.79930 -11.76126 -11.61883 -11.34509 -11.27523 -11.19574 -11.01359 -10.74301 -10.59909 -10.30629 -10.22964 -10.10057 -10.01732 -9.83712 -9.57035 -8.58577 -8.35854 -6.57422 -5.75067 -3.17878 -0.93683 1.10034 2.25076 2.80741 3.37475 3.39440 3.47530 3.50082 3.51866 3.96690 4.12360 4.29690 4.33580 4.52880 4.57999 4.84455 4.94117 5.00142 5.07902 5.14889 5.31064 5.34929 5.37640 5.40949 5.45903 5.67171 5.81848 5.98081 6.12904 6.25073 6.41080 6.53669 6.61178 6.83771 7.01473 7.13007 7.46293 7.69076 7.83130 8.47781 9.24318 9.87641 10.46291 11.32367 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.019204 B = 0.003749 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.646964 B = 7467.481099 C = 7857.264522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.494 4.494 3 S 2.307 3.693 4 O -0.924 6.924 5 C -0.595 4.595 6 C -0.143 4.143 7 N -1.508 6.508 8 S 2.780 3.220 9 O -1.008 7.008 10 O -0.986 6.986 11 N -0.965 5.965 12 C 0.107 3.893 13 C 0.132 3.868 14 N -0.590 5.590 15 C -0.249 4.249 16 H 0.067 0.933 17 C 0.001 3.999 18 N -0.903 5.903 19 Si 0.902 3.098 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.291 1.291 23 C 0.159 3.841 24 C 0.099 3.901 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.155 0.845 29 H 0.152 0.848 30 H 0.154 0.846 31 H 0.134 0.866 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.028 0.972 39 H 0.253 0.747 40 H 0.028 0.972 41 H 0.096 0.904 42 H 0.063 0.937 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.578 1.473 1.226 20.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.634 4.634 3 S 2.498 3.502 4 O -0.909 6.909 5 C -0.731 4.731 6 C -0.201 4.201 7 N -1.527 6.527 8 S 2.789 3.211 9 O -0.991 6.991 10 O -0.968 6.968 11 N -0.807 5.807 12 C -0.020 4.020 13 C 0.005 3.995 14 N -0.313 5.313 15 C -0.378 4.378 16 H 0.085 0.915 17 C -0.197 4.197 18 N -0.548 5.548 19 Si 0.732 3.268 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.218 1.218 23 C 0.032 3.968 24 C -0.028 4.028 25 H 0.092 0.908 26 H 0.098 0.902 27 H 0.116 0.884 28 H 0.173 0.827 29 H 0.170 0.830 30 H 0.172 0.828 31 H 0.152 0.848 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.046 0.954 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.114 0.886 42 H 0.081 0.919 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -20.690 2.319 0.585 20.828 hybrid contribution 0.945 -0.340 0.712 1.231 sum -19.745 1.980 1.297 19.886 Atomic orbital electron populations 1.21843 0.90168 1.06303 1.03936 1.29069 1.05443 1.14612 1.14315 1.11660 0.76666 0.81975 0.79872 1.93668 1.84672 1.68566 1.43952 1.30405 1.11995 1.13403 1.17301 1.21583 1.04118 0.97683 0.96735 1.76672 1.30415 1.63341 1.82259 1.01529 0.74444 0.72021 0.73153 1.93559 1.85117 1.74961 1.45501 1.93625 1.84348 1.74294 1.44574 1.57011 1.25161 1.85519 1.13034 1.21987 0.96061 1.00361 0.83574 1.21283 0.95174 0.92637 0.90447 1.43938 1.07806 1.80062 0.99466 1.19273 0.84336 1.27458 1.06776 0.91550 1.25034 0.97732 0.96813 1.00168 1.70035 1.33274 1.32688 1.18794 0.86228 0.85589 0.77222 0.77759 1.20284 1.21604 1.21848 1.21265 0.95236 0.89540 0.90770 1.22349 0.95784 1.01870 0.82775 0.90773 0.90215 0.88449 0.82668 0.82951 0.82842 0.84788 0.89392 0.89572 0.91316 0.91591 0.90492 0.91866 0.95422 0.93736 0.95423 0.88557 0.91867 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 52. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.57 9.88 37.16 0.37 -0.20 16 2 C -0.49 -3.01 6.34 37.16 0.24 -2.78 16 3 S 2.31 27.05 3.77 -98.05 -0.37 26.68 16 4 O -0.92 -14.77 17.12 -46.35 -0.79 -15.57 16 5 C -0.60 -5.14 5.99 37.16 0.22 -4.92 16 6 C -0.14 -1.09 9.69 37.16 0.36 -0.73 16 7 N -1.51 -24.48 10.83 60.35 0.65 -23.82 16 8 S 2.78 54.72 5.76 -98.05 -0.56 54.15 16 9 O -1.01 -19.29 14.55 -57.17 -0.83 -20.12 16 10 O -0.99 -22.04 15.95 -62.88 -1.00 -23.04 16 11 N -0.96 -19.86 3.32 -113.00 -0.38 -20.24 16 12 C 0.11 2.17 6.55 -3.59 -0.02 2.15 16 13 C 0.13 2.93 6.67 -3.59 -0.02 2.91 16 14 N -0.59 -15.09 2.96 -171.76 -0.51 -15.60 16 15 C -0.25 -6.84 9.57 -15.06 -0.14 -6.98 16 16 H 0.07 1.79 7.89 -52.49 -0.41 1.38 16 17 C 0.00 0.02 4.91 -17.43 -0.09 -0.06 16 18 N -0.90 -25.87 11.19 55.49 0.62 -25.25 16 19 Si 0.90 21.60 29.59 -169.99 -5.03 16.57 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 23 C 0.16 3.85 5.54 -3.37 -0.02 3.83 16 24 C 0.10 2.06 6.56 -3.36 -0.02 2.03 16 25 H 0.07 0.09 7.68 -51.93 -0.40 -0.31 16 26 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.10 0.19 8.14 -51.93 -0.42 -0.24 16 28 H 0.16 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.15 0.59 7.12 -51.92 -0.37 0.22 16 30 H 0.15 1.66 6.47 -51.92 -0.34 1.32 16 31 H 0.13 0.55 7.85 -51.92 -0.41 0.14 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.28 6.85 -51.93 -0.36 -0.08 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.08 1.46 7.09 -51.93 -0.37 1.09 16 37 H 0.06 1.32 7.93 -51.93 -0.41 0.90 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.03 0.69 8.14 -51.92 -0.42 0.27 16 41 H 0.10 2.53 5.99 -51.93 -0.31 2.22 16 42 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 43 H 0.07 1.40 7.09 -51.93 -0.37 1.03 16 LS Contribution 361.62 15.07 5.45 5.45 Total: -1.00 -38.84 361.62 -8.57 -47.40 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -6.68 Total: -1.86 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: 0.87 Total: -4.74 kcal Atomic # 7 Polarization: -85.30 SS G_CDS: 0.39 Total: -84.91 kcal Atomic # 8 Polarization: -56.11 SS G_CDS: -2.63 Total: -58.73 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Atomic # 16 Polarization: 81.76 SS G_CDS: -0.93 Total: 80.83 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -38.84 -8.57 -47.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866696044.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.104 kcal (2) G-P(sol) polarization free energy of solvation -38.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds