Wall clock time and date at job start Tue Mar 31 2020 22:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.74353 * 2 1 4 4 C 1.53809 * 109.75842 * 239.37540 * 2 1 3 5 5 N 1.46972 * 108.57774 * 289.94303 * 4 2 1 6 6 S 1.65603 * 120.59229 * 124.67018 * 5 4 2 7 7 O 1.42100 * 106.40262 * 23.52073 * 6 5 4 8 8 O 1.42098 * 106.39978 * 156.43855 * 6 5 4 9 9 N 1.65598 * 107.21736 * 269.97808 * 6 5 4 10 10 S 1.49351 * 120.00183 * 179.97438 * 9 6 5 11 11 C 1.81400 * 107.52851 * 180.02562 * 10 9 6 12 12 C 1.81403 * 107.52506 * 295.10856 * 10 9 6 13 13 O 1.42100 * 107.23957 * 57.55058 * 10 9 6 14 14 C 1.46961 * 118.81085 * 304.65354 * 5 4 2 15 15 C 1.53368 * 108.63901 * 55.22481 * 14 5 4 16 16 H 1.08997 * 109.61260 * 70.31812 * 15 14 5 17 17 C 1.53007 * 109.60937 * 190.83279 * 15 14 5 18 18 N 1.46960 * 109.61003 * 120.42639 * 2 1 3 19 19 C 1.36938 * 120.59203 * 244.54352 * 18 2 1 20 20 H 1.08002 * 120.00230 * 208.88493 * 19 18 2 21 21 C 1.38810 * 120.00016 * 28.88450 * 19 18 2 22 22 N 1.31622 * 120.00401 * 17.00355 * 21 19 18 23 23 Si 1.86805 * 120.00172 * 196.72673 * 21 19 18 24 24 H 1.48504 * 109.46646 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.46996 * 119.99959 * 23 21 19 26 26 H 1.48494 * 109.47507 * 240.00473 * 23 21 19 27 27 H 1.09002 * 109.47565 * 299.57614 * 1 2 3 28 28 H 1.09004 * 109.47203 * 59.57963 * 1 2 3 29 29 H 1.09004 * 109.46881 * 179.57431 * 1 2 3 30 30 H 1.08997 * 109.74261 * 170.15862 * 4 2 1 31 31 H 1.08995 * 109.67936 * 49.69064 * 4 2 1 32 32 H 1.09004 * 109.46787 * 59.99925 * 11 10 9 33 33 H 1.08995 * 109.47550 * 179.97438 * 11 10 9 34 34 H 1.09003 * 109.46799 * 300.00576 * 11 10 9 35 35 H 1.09008 * 109.46834 * 58.45599 * 12 10 9 36 36 H 1.08994 * 109.47754 * 178.45673 * 12 10 9 37 37 H 1.09002 * 109.46945 * 298.46303 * 12 10 9 38 38 H 1.09009 * 109.60916 * 295.47531 * 14 5 4 39 39 H 1.09006 * 109.74999 * 175.05402 * 14 5 4 40 40 H 1.09000 * 109.46761 * 179.14142 * 17 15 14 41 41 H 1.08998 * 109.46857 * 299.14508 * 17 15 14 42 42 H 1.09001 * 109.46919 * 59.14436 * 17 15 14 43 43 H 0.97000 * 120.00000 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0260 0.0000 4 6 2.0500 -0.7374 -1.2456 5 7 1.7611 -2.1706 -1.0960 6 16 0.9009 -2.9825 -2.2550 7 8 1.0571 -2.2460 -3.4601 8 8 1.2546 -4.3532 -2.1306 9 7 -0.6995 -2.8734 -1.8442 10 16 -1.7373 -3.5139 -2.7064 11 6 -3.3534 -3.1875 -1.9500 12 6 -1.7157 -2.6649 -4.3093 13 8 -1.4190 -4.8962 -2.7920 14 6 2.2494 -2.8704 0.1005 15 6 1.7342 -2.1342 1.3434 16 1 0.6585 -2.2827 1.4369 17 6 2.4407 -2.6731 2.5891 18 7 2.0232 -0.7011 1.1937 19 6 2.7344 -0.0297 2.1522 20 1 3.4670 -0.5543 2.7476 21 6 2.5138 1.3252 2.3584 22 7 1.4205 1.8922 1.8939 23 14 3.7647 2.3422 3.3020 24 1 4.8947 1.4739 3.7196 25 1 4.2740 3.4323 2.4317 26 1 3.1201 2.9289 4.5043 27 1 -0.3634 0.5072 0.8938 28 1 -0.3634 0.5204 -0.8862 29 1 -0.3633 -1.0277 -0.0076 30 1 3.1257 -0.5889 -1.3391 31 1 1.5492 -0.3542 -2.1347 32 1 -3.5172 -2.1114 -1.8931 33 1 -4.1368 -3.6423 -2.5562 34 1 -3.3773 -3.6122 -0.9464 35 1 -0.7213 -2.7438 -4.7489 36 1 -2.4449 -3.1266 -4.9750 37 1 -1.9677 -1.6140 -4.1672 38 1 3.3395 -2.8738 0.1029 39 1 1.8805 -3.8961 0.1037 40 1 2.0840 -2.1379 3.4691 41 1 2.2249 -3.7360 2.6978 42 1 3.5164 -2.5292 2.4875 43 1 1.2662 2.8389 2.0384 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867598732.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:50 Heat of formation + Delta-G solvation = -24.861507 kcal Electronic energy + Delta-G solvation = -28077.434210 eV Core-core repulsion = 24221.810076 eV Total energy + Delta-G solvation = -3855.624134 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -38.02644 -36.94425 -36.62872 -35.48388 -33.86495 -33.05722 -32.51380 -30.86049 -30.29666 -29.51068 -27.67135 -26.18500 -24.67256 -23.13553 -20.76916 -20.31711 -18.75992 -18.21559 -17.59275 -17.14223 -16.34295 -16.05568 -15.63640 -15.32424 -14.94698 -14.29317 -14.04159 -13.86872 -13.75092 -13.71596 -13.61932 -13.41456 -13.23773 -12.92752 -12.75307 -12.00567 -11.88793 -11.73636 -11.67679 -11.60788 -11.47391 -11.33922 -11.26196 -10.89886 -10.85863 -10.65640 -10.46123 -10.44356 -10.24708 -10.13983 -9.99010 -9.88791 -9.57538 -9.27491 -8.42205 -8.27945 -6.49391 -5.70465 -3.13157 -0.94314 1.12251 2.28330 2.83112 3.38724 3.40685 3.49470 3.51074 3.54387 4.24269 4.37163 4.46236 4.54636 4.55177 4.98181 5.09524 5.21960 5.32003 5.43402 5.45074 5.58297 5.90691 6.05866 6.18531 6.34889 6.40121 6.42411 6.50728 6.59907 6.78388 6.91698 7.05124 7.06041 7.12705 7.26378 7.33307 7.78711 7.83888 7.95142 8.53899 9.30557 9.93300 10.51884 11.36193 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.020693 B = 0.004157 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.787743 B = 6733.947859 C = 7028.335902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.180 3.820 3 H 0.102 0.898 4 C 0.105 3.895 5 N -0.962 5.962 6 S 2.781 3.219 7 O -1.011 7.011 8 O -0.986 6.986 9 N -1.507 6.507 10 S 2.318 3.682 11 C -0.533 4.533 12 C -0.640 4.640 13 O -0.924 6.924 14 C 0.113 3.887 15 C 0.155 3.845 16 H 0.036 0.964 17 C -0.137 4.137 18 N -0.579 5.579 19 C -0.244 4.244 20 H 0.070 0.930 21 C 0.001 3.999 22 N -0.898 5.898 23 Si 0.897 3.103 24 H -0.279 1.279 25 H -0.291 1.291 26 H -0.293 1.293 27 H 0.070 0.930 28 H 0.022 0.978 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.147 0.853 33 H 0.132 0.868 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.129 0.871 37 H 0.144 0.856 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.040 0.960 42 H 0.054 0.946 43 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.755 -7.943 -10.714 17.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.072 3.928 3 H 0.120 0.880 4 C -0.022 4.022 5 N -0.804 5.804 6 S 2.790 3.210 7 O -0.994 6.994 8 O -0.968 6.968 9 N -1.526 6.526 10 S 2.509 3.491 11 C -0.693 4.693 12 C -0.796 4.796 13 O -0.909 6.909 14 C -0.014 4.014 15 C 0.047 3.953 16 H 0.054 0.946 17 C -0.195 4.195 18 N -0.302 5.302 19 C -0.374 4.374 20 H 0.088 0.912 21 C -0.197 4.197 22 N -0.543 5.543 23 Si 0.728 3.272 24 H -0.204 1.204 25 H -0.218 1.218 26 H -0.220 1.220 27 H 0.089 0.911 28 H 0.041 0.959 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.165 0.835 33 H 0.151 0.849 34 H 0.168 0.832 35 H 0.167 0.833 36 H 0.148 0.852 37 H 0.162 0.838 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.059 0.941 42 H 0.073 0.927 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.218 -8.823 -10.991 18.013 hybrid contribution 0.277 1.281 0.286 1.342 sum -10.941 -7.542 -10.704 17.063 Atomic orbital electron populations 1.22071 0.97971 1.00291 1.00439 1.20790 0.92613 0.96482 0.82957 0.88033 1.22337 1.00489 0.78661 1.00681 1.56950 1.67620 1.19687 1.36148 1.01502 0.73521 0.72980 0.73035 1.93558 1.86370 1.74002 1.45437 1.93628 1.82634 1.34023 1.86538 1.76757 1.33931 1.80029 1.61920 1.10757 0.82861 0.77329 0.78199 1.29054 1.12958 1.13655 1.13675 1.30505 1.13575 1.15333 1.20204 1.93695 1.80408 1.30832 1.85974 1.22031 0.99092 0.94736 0.85572 1.20780 0.96681 0.86359 0.91467 0.94624 1.21785 1.00818 0.98238 0.98645 1.44087 1.63133 1.03073 1.19908 1.19236 1.13130 0.91760 1.13273 0.91216 1.25019 0.96486 0.98556 0.99613 1.70025 1.23661 1.10942 1.49695 0.86302 0.81275 0.80407 0.79214 1.20435 1.21816 1.22030 0.91066 0.95913 0.93300 0.92061 0.90790 0.83466 0.84903 0.83188 0.83332 0.85198 0.83756 0.91709 0.90621 0.91745 0.94122 0.92657 0.93961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 8.95 37.16 0.33 -2.88 16 2 C 0.18 4.14 2.36 -67.26 -0.16 3.98 16 3 H 0.10 2.63 6.03 -51.93 -0.31 2.31 16 4 C 0.10 2.15 5.95 -3.36 -0.02 2.13 16 5 N -0.96 -19.29 2.97 -113.00 -0.34 -19.62 16 6 S 2.78 52.96 5.76 -98.05 -0.57 52.39 16 7 O -1.01 -19.09 14.54 -57.17 -0.83 -19.92 16 8 O -0.99 -21.43 15.96 -62.86 -1.00 -22.44 16 9 N -1.51 -22.66 10.35 60.35 0.62 -22.04 16 10 S 2.32 23.01 4.91 -98.05 -0.48 22.52 16 11 C -0.53 -2.10 10.89 101.05 1.10 -1.00 16 12 C -0.64 -4.45 10.26 101.05 1.04 -3.41 16 13 O -0.92 -13.61 17.12 -46.28 -0.79 -14.40 16 14 C 0.11 2.25 5.86 -3.60 -0.02 2.23 16 15 C 0.16 3.30 3.23 -67.48 -0.22 3.08 16 16 H 0.04 0.79 7.38 -51.93 -0.38 0.41 16 17 C -0.14 -2.61 7.94 37.16 0.30 -2.31 16 18 N -0.58 -13.99 2.68 -156.77 -0.42 -14.41 16 19 C -0.24 -6.38 8.57 -15.06 -0.13 -6.51 16 20 H 0.07 1.80 6.23 -52.49 -0.33 1.47 16 21 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 22 N -0.90 -24.68 10.15 55.49 0.56 -24.12 16 23 Si 0.90 21.28 29.59 -169.99 -5.03 16.25 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 27 H 0.07 1.74 7.18 -51.93 -0.37 1.37 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 1.00 6.47 -51.93 -0.34 0.66 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.07 1.40 7.07 -51.93 -0.37 1.04 16 32 H 0.15 0.33 8.14 -51.92 -0.42 -0.10 16 33 H 0.13 0.03 8.14 -51.93 -0.42 -0.39 16 34 H 0.15 0.65 8.14 -51.92 -0.42 0.23 16 35 H 0.15 1.46 6.46 -51.92 -0.34 1.13 16 36 H 0.13 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.14 0.70 8.14 -51.92 -0.42 0.28 16 38 H 0.06 1.26 8.12 -51.92 -0.42 0.83 16 39 H 0.08 1.43 7.10 -51.93 -0.37 1.06 16 40 H 0.06 1.30 7.67 -51.93 -0.40 0.90 16 41 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 1.05 7.38 -51.93 -0.38 0.67 16 43 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 354.81 15.07 5.35 5.35 Total: -1.00 -37.99 354.81 -7.31 -45.30 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -6.52 Total: -0.12 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: 2.13 Total: -4.74 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: 0.43 Total: -80.19 kcal Atomic # 8 Polarization: -54.14 SS G_CDS: -2.63 Total: -56.76 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Atomic # 16 Polarization: 75.96 SS G_CDS: -1.05 Total: 74.92 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -37.99 -7.31 -45.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867598732.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.442 kcal (2) G-P(sol) polarization free energy of solvation -37.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds