Wall clock time and date at job start Tue Mar 31 2020 22:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.74353 * 2 1 4 4 C 1.53809 * 109.75842 * 239.37540 * 2 1 3 5 5 N 1.46972 * 108.57774 * 289.94303 * 4 2 1 6 6 S 1.65603 * 120.59229 * 124.67018 * 5 4 2 7 7 O 1.42100 * 106.40262 * 23.52073 * 6 5 4 8 8 O 1.42098 * 106.39978 * 156.43855 * 6 5 4 9 9 N 1.65598 * 107.21736 * 269.97808 * 6 5 4 10 10 S 1.49351 * 120.00183 * 179.97438 * 9 6 5 11 11 C 1.81400 * 107.52851 * 180.02562 * 10 9 6 12 12 C 1.81403 * 107.52506 * 295.10856 * 10 9 6 13 13 O 1.42100 * 107.23957 * 57.55058 * 10 9 6 14 14 C 1.46961 * 118.81085 * 304.65354 * 5 4 2 15 15 C 1.53368 * 108.63901 * 55.22481 * 14 5 4 16 16 H 1.08997 * 109.61260 * 70.31812 * 15 14 5 17 17 C 1.53007 * 109.60937 * 190.83279 * 15 14 5 18 18 N 1.46960 * 109.61003 * 120.42639 * 2 1 3 19 19 C 1.36938 * 120.59203 * 244.54352 * 18 2 1 20 20 H 1.08002 * 120.00230 * 208.88493 * 19 18 2 21 21 C 1.38810 * 120.00016 * 28.88450 * 19 18 2 22 22 N 1.31622 * 120.00401 * 17.00355 * 21 19 18 23 23 Si 1.86805 * 120.00172 * 196.72673 * 21 19 18 24 24 H 1.48504 * 109.46646 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.46996 * 119.99959 * 23 21 19 26 26 H 1.48494 * 109.47507 * 240.00473 * 23 21 19 27 27 H 1.09002 * 109.47565 * 299.57614 * 1 2 3 28 28 H 1.09004 * 109.47203 * 59.57963 * 1 2 3 29 29 H 1.09004 * 109.46881 * 179.57431 * 1 2 3 30 30 H 1.08997 * 109.74261 * 170.15862 * 4 2 1 31 31 H 1.08995 * 109.67936 * 49.69064 * 4 2 1 32 32 H 1.09004 * 109.46787 * 59.99925 * 11 10 9 33 33 H 1.08995 * 109.47550 * 179.97438 * 11 10 9 34 34 H 1.09003 * 109.46799 * 300.00576 * 11 10 9 35 35 H 1.09008 * 109.46834 * 58.45599 * 12 10 9 36 36 H 1.08994 * 109.47754 * 178.45673 * 12 10 9 37 37 H 1.09002 * 109.46945 * 298.46303 * 12 10 9 38 38 H 1.09009 * 109.60916 * 295.47531 * 14 5 4 39 39 H 1.09006 * 109.74999 * 175.05402 * 14 5 4 40 40 H 1.09000 * 109.46761 * 179.14142 * 17 15 14 41 41 H 1.08998 * 109.46857 * 299.14508 * 17 15 14 42 42 H 1.09001 * 109.46919 * 59.14436 * 17 15 14 43 43 H 0.97000 * 120.00000 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0260 0.0000 4 6 2.0500 -0.7374 -1.2456 5 7 1.7611 -2.1706 -1.0960 6 16 0.9009 -2.9825 -2.2550 7 8 1.0571 -2.2460 -3.4601 8 8 1.2546 -4.3532 -2.1306 9 7 -0.6995 -2.8734 -1.8442 10 16 -1.7373 -3.5139 -2.7064 11 6 -3.3534 -3.1875 -1.9500 12 6 -1.7157 -2.6649 -4.3093 13 8 -1.4190 -4.8962 -2.7920 14 6 2.2494 -2.8704 0.1005 15 6 1.7342 -2.1342 1.3434 16 1 0.6585 -2.2827 1.4369 17 6 2.4407 -2.6731 2.5891 18 7 2.0232 -0.7011 1.1937 19 6 2.7344 -0.0297 2.1522 20 1 3.4670 -0.5543 2.7476 21 6 2.5138 1.3252 2.3584 22 7 1.4205 1.8922 1.8939 23 14 3.7647 2.3422 3.3020 24 1 4.8947 1.4739 3.7196 25 1 4.2740 3.4323 2.4317 26 1 3.1201 2.9289 4.5043 27 1 -0.3634 0.5072 0.8938 28 1 -0.3634 0.5204 -0.8862 29 1 -0.3633 -1.0277 -0.0076 30 1 3.1257 -0.5889 -1.3391 31 1 1.5492 -0.3542 -2.1347 32 1 -3.5172 -2.1114 -1.8931 33 1 -4.1368 -3.6423 -2.5562 34 1 -3.3773 -3.6122 -0.9464 35 1 -0.7213 -2.7438 -4.7489 36 1 -2.4449 -3.1266 -4.9750 37 1 -1.9677 -1.6140 -4.1672 38 1 3.3395 -2.8738 0.1029 39 1 1.8805 -3.8961 0.1037 40 1 2.0840 -2.1379 3.4691 41 1 2.2249 -3.7360 2.6978 42 1 3.5164 -2.5292 2.4875 43 1 1.2662 2.8389 2.0384 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867598732.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:48 Heat of formation + Delta-G solvation = -55.919573 kcal Electronic energy + Delta-G solvation = -28078.780989 eV Core-core repulsion = 24221.810076 eV Total energy + Delta-G solvation = -3856.970912 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -39.73827 -38.32103 -37.62700 -36.95879 -35.60326 -34.23205 -34.13106 -32.72899 -30.74323 -30.01015 -29.50626 -27.80666 -26.43586 -24.93537 -22.48926 -21.51552 -20.41357 -19.56412 -18.90784 -18.32961 -17.65985 -17.30781 -16.96759 -16.69025 -16.46058 -15.69789 -15.61367 -15.41665 -15.22174 -14.74305 -14.61249 -14.34755 -14.00554 -13.86886 -13.70732 -13.57370 -13.52769 -13.35161 -13.13389 -13.02887 -12.93472 -12.76030 -12.65841 -12.56739 -12.37300 -12.28716 -12.18137 -12.14125 -11.88331 -11.61955 -11.43112 -11.31911 -11.08649 -11.04968 -10.36914 -9.95993 -8.41664 -7.70980 -5.15406 -1.57213 -0.19009 1.50516 1.54663 1.61116 1.62633 1.79069 2.03766 2.60059 2.81918 3.41134 3.60673 3.61612 3.64659 3.91196 3.97610 4.06805 4.15018 4.25348 4.27903 4.45858 4.55097 4.68367 4.70642 4.77024 4.90280 4.93359 4.96803 4.99766 5.14280 5.22142 5.29322 5.36919 5.49395 5.56534 5.69423 5.81929 6.00033 6.08507 6.55929 7.31591 8.00988 8.55615 9.33112 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.020693 B = 0.004157 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.787743 B = 6733.947859 C = 7028.335902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.177 3.823 3 H 0.071 0.929 4 C 0.114 3.886 5 N -0.972 5.972 6 S 2.787 3.213 7 O -1.020 7.020 8 O -1.024 7.024 9 N -1.528 6.528 10 S 2.277 3.723 11 C -0.491 4.491 12 C -0.621 4.621 13 O -0.986 6.986 14 C 0.117 3.883 15 C 0.152 3.848 16 H 0.027 0.973 17 C -0.129 4.129 18 N -0.592 5.592 19 C -0.248 4.248 20 H 0.070 0.930 21 C -0.044 4.044 22 N -0.920 5.920 23 Si 0.954 3.046 24 H -0.273 1.273 25 H -0.296 1.296 26 H -0.297 1.297 27 H 0.038 0.962 28 H 0.042 0.958 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.177 0.823 33 H 0.185 0.815 34 H 0.151 0.849 35 H 0.118 0.882 36 H 0.179 0.821 37 H 0.173 0.827 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.049 0.951 41 H 0.071 0.929 42 H 0.052 0.948 43 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.209 -8.041 -11.658 20.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.069 3.931 3 H 0.089 0.911 4 C -0.013 4.013 5 N -0.813 5.813 6 S 2.795 3.205 7 O -1.003 7.003 8 O -1.007 7.007 9 N -1.549 6.549 10 S 2.475 3.525 11 C -0.654 4.654 12 C -0.779 4.779 13 O -0.971 6.971 14 C -0.010 4.010 15 C 0.045 3.955 16 H 0.045 0.955 17 C -0.187 4.187 18 N -0.316 5.316 19 C -0.378 4.378 20 H 0.088 0.912 21 C -0.240 4.240 22 N -0.566 5.566 23 Si 0.784 3.216 24 H -0.198 1.198 25 H -0.223 1.223 26 H -0.225 1.225 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.107 0.893 32 H 0.195 0.805 33 H 0.202 0.798 34 H 0.169 0.831 35 H 0.137 0.863 36 H 0.197 0.803 37 H 0.191 0.809 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.071 0.929 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -13.621 -8.960 -11.930 20.202 hybrid contribution 0.818 1.278 0.472 1.589 sum -12.803 -7.681 -11.458 18.820 Atomic orbital electron populations 1.21871 0.96893 1.00676 0.99740 1.20734 0.93449 0.95156 0.83776 0.91141 1.22125 1.00236 0.79023 0.99919 1.56953 1.69062 1.19128 1.36133 1.01120 0.74688 0.72088 0.72600 1.93535 1.87137 1.73846 1.45794 1.93574 1.84105 1.36074 1.86942 1.76407 1.33094 1.80144 1.65252 1.11938 0.85173 0.75824 0.79528 1.28971 1.06766 1.16129 1.13524 1.30293 1.13533 1.16756 1.17353 1.93646 1.82958 1.33562 1.86977 1.21940 0.99129 0.94894 0.85079 1.20900 0.96475 0.85055 0.93093 0.95503 1.21707 1.00236 0.99887 0.96869 1.44285 1.63185 1.04176 1.19911 1.19465 1.13052 0.92101 1.13204 0.91244 1.25603 0.97910 0.99488 1.01011 1.70162 1.24820 1.10625 1.50978 0.85409 0.79544 0.78870 0.77741 1.19820 1.22285 1.22492 0.94274 0.93872 0.92253 0.92629 0.89320 0.80517 0.79765 0.83086 0.86312 0.80329 0.80907 0.91680 0.89850 0.93235 0.91023 0.92916 0.94537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.72 8.95 71.98 0.64 -5.08 16 2 C 0.18 8.26 2.36 45.18 0.11 8.36 16 3 H 0.07 3.74 6.03 -2.38 -0.01 3.73 16 4 C 0.11 4.70 5.95 86.56 0.51 5.21 16 5 N -0.97 -39.19 2.97 -511.42 -1.52 -40.71 16 6 S 2.79 106.68 5.76 -37.15 -0.21 106.47 16 7 O -1.02 -38.51 14.54 -128.00 -1.86 -40.37 16 8 O -1.02 -45.83 15.96 -122.56 -1.96 -47.79 16 9 N -1.53 -44.39 10.35 37.02 0.38 -44.00 16 10 S 2.28 40.15 4.91 -37.15 -0.18 39.97 16 11 C -0.49 -1.22 10.89 113.37 1.23 0.01 16 12 C -0.62 -6.43 10.26 113.37 1.16 -5.27 16 13 O -0.99 -28.93 17.12 -138.42 -2.37 -31.31 16 14 C 0.12 4.68 5.86 86.42 0.51 5.18 16 15 C 0.15 6.50 3.23 45.03 0.15 6.64 16 16 H 0.03 1.21 7.38 -2.39 -0.02 1.19 16 17 C -0.13 -4.87 7.94 71.98 0.57 -4.30 16 18 N -0.59 -28.99 2.68 -649.89 -1.74 -30.73 16 19 C -0.25 -13.11 8.57 84.03 0.72 -12.39 16 20 H 0.07 3.61 6.23 -2.91 -0.02 3.59 16 21 C -0.04 -2.39 4.91 84.86 0.42 -1.97 16 22 N -0.92 -51.52 10.15 21.65 0.22 -51.30 16 23 Si 0.95 44.39 29.59 68.60 2.03 46.42 16 24 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 25 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 26 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 27 H 0.04 1.92 7.18 -2.39 -0.02 1.90 16 28 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.06 2.39 6.47 -2.38 -0.02 2.38 16 30 H 0.06 2.30 8.14 -2.39 -0.02 2.29 16 31 H 0.09 3.34 7.07 -2.39 -0.02 3.32 16 32 H 0.18 -0.39 8.14 -2.39 -0.02 -0.41 16 33 H 0.18 -1.26 8.14 -2.39 -0.02 -1.28 16 34 H 0.15 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.12 2.15 6.46 -2.39 -0.02 2.14 16 36 H 0.18 0.07 8.14 -2.39 -0.02 0.05 16 37 H 0.17 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.06 2.55 8.12 -2.38 -0.02 2.53 16 39 H 0.08 3.18 7.10 -2.38 -0.02 3.16 16 40 H 0.05 1.99 7.67 -2.39 -0.02 1.97 16 41 H 0.07 2.22 8.14 -2.39 -0.02 2.21 16 42 H 0.05 1.99 7.38 -2.39 -0.02 1.97 16 43 H 0.25 13.46 8.31 -92.71 -0.77 12.69 16 Total: -1.00 -88.30 354.81 -0.18 -88.48 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 1.01 Total: 8.44 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: 6.02 Total: -3.59 kcal Atomic # 7 Polarization: -164.08 SS G_CDS: -2.66 Total: -166.73 kcal Atomic # 8 Polarization: -113.27 SS G_CDS: -6.19 Total: -119.46 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Atomic # 16 Polarization: 146.84 SS G_CDS: -0.40 Total: 146.44 kcal Total: -88.30 -0.18 -88.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867598732.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.564 kcal (2) G-P(sol) polarization free energy of solvation -88.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds