Wall clock time and date at job start Tue Mar 31 2020 23:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 120.00178 * 2 1 4 4 S 1.65604 * 119.99801 * 179.97438 * 2 1 3 5 5 C 1.81402 * 108.33070 * 242.47124 * 4 2 1 6 6 O 1.42095 * 108.33279 * 117.53616 * 4 2 1 7 7 N 1.49354 * 108.73301 * 359.97438 * 4 2 1 8 8 S 1.65600 * 120.00039 * 179.97438 * 7 4 2 9 9 O 1.42099 * 106.39807 * 66.46584 * 8 7 4 10 10 O 1.42097 * 106.40481 * 293.54593 * 8 7 4 11 11 N 1.65605 * 107.21849 * 180.02562 * 8 7 4 12 12 C 1.46499 * 119.99782 * 90.00219 * 11 8 7 13 13 C 1.50701 * 109.46992 * 94.99996 * 12 11 8 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99594 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99875 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47061 * 90.00257 * 17 15 13 19 19 H 1.48497 * 109.46906 * 209.99430 * 17 15 13 20 20 H 1.48498 * 109.47403 * 329.99876 * 17 15 13 21 21 C 1.46502 * 119.99873 * 270.00247 * 11 8 7 22 22 C 1.52993 * 109.47176 * 265.00002 * 21 11 8 23 23 C 1.53001 * 117.50103 * 243.62531 * 22 21 11 24 24 C 1.52996 * 117.50084 * 175.00076 * 22 21 11 25 25 H 1.08989 * 109.47362 * 270.00271 * 1 2 3 26 26 H 1.08999 * 109.47053 * 30.00621 * 1 2 3 27 27 H 1.09005 * 109.46765 * 150.00025 * 1 2 3 28 28 H 1.09001 * 109.46890 * 239.99964 * 3 2 1 29 29 H 1.08998 * 109.47085 * 359.97438 * 3 2 1 30 30 H 1.08997 * 109.47296 * 119.99844 * 3 2 1 31 31 H 1.08999 * 109.47120 * 178.89563 * 5 4 2 32 32 H 1.09000 * 109.46910 * 298.89018 * 5 4 2 33 33 H 1.08995 * 109.47313 * 58.89344 * 5 4 2 34 34 H 1.09002 * 109.47391 * 334.99987 * 12 11 8 35 35 H 1.09001 * 109.46813 * 215.00043 * 12 11 8 36 36 H 0.97002 * 119.99739 * 180.02562 * 16 15 13 37 37 H 1.08998 * 109.47222 * 25.00345 * 21 11 8 38 38 H 1.09000 * 109.46517 * 144.99933 * 21 11 8 39 39 H 1.09008 * 115.55069 * 29.32804 * 22 21 11 40 40 H 1.09007 * 117.49532 * 359.97438 * 23 22 21 41 41 H 1.08997 * 117.50168 * 145.01629 * 23 22 21 42 42 H 1.09003 * 117.50431 * 214.97944 * 24 22 21 43 43 H 1.09004 * 117.49559 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 16 2.2930 -1.4342 0.0006 5 6 3.2675 -1.5297 1.5277 6 8 3.0565 -1.5100 -1.1954 7 7 1.3079 -2.5568 0.0018 8 16 1.8396 -4.1251 0.0020 9 8 2.4848 -4.3297 1.2514 10 8 2.4833 -4.3307 -1.2480 11 7 0.4990 -5.0973 0.0026 12 6 -0.0943 -5.5276 -1.2659 13 6 0.4464 -6.8840 -1.6388 14 1 1.1603 -7.3764 -0.9951 15 6 0.0290 -7.4967 -2.8012 16 7 0.5005 -8.6806 -3.1263 17 14 -1.2062 -6.6453 -3.9142 18 1 -0.4842 -5.8101 -4.9074 19 1 -2.0191 -7.6658 -4.6234 20 1 -2.0972 -5.7833 -3.0968 21 6 -0.0936 -5.5270 1.2716 22 6 0.4555 -6.9037 1.6507 23 6 -0.5377 -8.0654 1.7216 24 6 0.0461 -7.4783 3.0083 25 1 -0.3633 0.0000 1.0275 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5139 28 1 2.8242 1.3264 -0.8900 29 1 1.4893 2.0972 -0.0005 30 1 2.8242 1.3265 0.8900 31 1 3.8058 -2.4771 1.5566 32 1 3.9805 -0.7058 1.5557 33 1 2.6019 -1.4636 2.3882 34 1 0.1564 -4.8094 -2.0465 35 1 -1.1776 -5.5850 -1.1593 36 1 0.2071 -9.1115 -3.9444 37 1 0.1575 -4.8083 2.0517 38 1 -1.1769 -5.5844 1.1656 39 1 1.4621 -7.1228 1.2943 40 1 -1.5824 -7.8487 1.4986 41 1 -0.1847 -9.0490 1.4117 42 1 0.7831 -8.0758 3.5450 43 1 -0.6148 -6.8756 3.6312 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881860558.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:45 Heat of formation + Delta-G solvation = -54.103100 kcal Electronic energy + Delta-G solvation = -27299.066049 eV Core-core repulsion = 23442.173905 eV Total energy + Delta-G solvation = -3856.892144 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -38.88625 -38.30848 -37.80914 -37.29813 -36.90828 -36.35160 -34.47430 -34.32248 -30.72545 -30.23094 -28.85066 -27.09400 -25.78405 -23.88653 -23.08956 -21.68355 -21.38686 -19.51319 -19.06430 -18.74369 -18.43260 -17.87843 -17.67388 -17.15077 -16.28115 -16.19681 -16.07935 -15.34098 -15.24941 -15.09184 -15.04406 -14.58093 -14.41771 -14.19899 -14.07402 -13.68586 -13.57507 -13.51299 -13.43765 -13.15247 -13.04754 -12.86882 -12.80269 -12.74160 -12.53124 -12.47668 -12.27309 -12.15941 -11.93830 -11.68846 -11.59097 -11.37834 -11.18427 -10.75997 -10.61962 -10.18969 -9.77009 -8.24163 -6.26393 -1.70653 -0.26007 1.28193 1.33747 1.39117 1.46315 1.77834 2.00322 2.37192 2.85645 3.07370 3.09336 3.52614 3.58689 3.66720 3.82786 3.83955 3.96073 4.03045 4.25217 4.28893 4.48210 4.50206 4.55895 4.69940 4.78801 4.79548 4.85904 4.86999 4.89382 4.94696 4.96785 5.11289 5.15581 5.32914 5.37944 5.40599 5.41333 5.52680 5.85655 6.37503 6.75174 7.34236 8.93152 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012822 B = 0.004934 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.179853 B = 5673.796721 C = 6824.656268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.953 5.953 3 C 0.061 3.939 4 S 2.543 3.457 5 C -0.633 4.633 6 O -0.999 6.999 7 N -1.543 6.543 8 S 2.785 3.215 9 O -1.009 7.009 10 O -1.024 7.024 11 N -0.963 5.963 12 C 0.236 3.764 13 C -0.523 4.523 14 H 0.037 0.963 15 C 0.010 3.990 16 N -0.948 5.948 17 Si 0.931 3.069 18 H -0.279 1.279 19 H -0.273 1.273 20 H -0.230 1.230 21 C 0.164 3.836 22 C -0.183 4.183 23 C -0.173 4.173 24 C -0.149 4.149 25 H 0.085 0.915 26 H 0.104 0.896 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.127 0.873 30 H 0.100 0.900 31 H 0.133 0.867 32 H 0.183 0.817 33 H 0.180 0.820 34 H 0.019 0.981 35 H 0.058 0.942 36 H 0.265 0.735 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.061 0.939 40 H 0.103 0.897 41 H 0.069 0.931 42 H 0.097 0.903 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.465 25.002 16.443 30.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.790 5.790 3 C -0.084 4.084 4 S 2.644 3.356 5 C -0.794 4.794 6 O -0.976 6.976 7 N -1.564 6.564 8 S 2.791 3.209 9 O -0.991 6.991 10 O -1.006 7.006 11 N -0.804 5.804 12 C 0.111 3.889 13 C -0.562 4.562 14 H 0.055 0.945 15 C -0.188 4.188 16 N -0.589 5.589 17 Si 0.754 3.246 18 H -0.205 1.205 19 H -0.198 1.198 20 H -0.153 1.153 21 C 0.039 3.961 22 C -0.204 4.204 23 C -0.210 4.210 24 C -0.186 4.186 25 H 0.104 0.896 26 H 0.122 0.878 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.146 0.854 30 H 0.118 0.882 31 H 0.151 0.849 32 H 0.201 0.799 33 H 0.198 0.802 34 H 0.037 0.963 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.079 0.921 40 H 0.121 0.879 41 H 0.087 0.913 42 H 0.115 0.885 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.783 24.638 15.483 29.154 hybrid contribution 0.152 -0.725 -0.865 1.139 sum -1.631 23.913 14.618 28.074 Atomic orbital electron populations 1.22008 0.74895 1.04726 1.04405 1.55752 1.15897 1.16325 1.91029 1.22346 0.98725 0.83787 1.03504 1.06748 0.73186 0.76030 0.79648 1.30577 1.16247 1.14369 1.18195 1.93588 1.74160 1.85274 1.44620 1.76276 1.63778 1.31381 1.84982 1.01212 0.72925 0.74248 0.72526 1.93540 1.74231 1.86336 1.44974 1.93624 1.74649 1.85640 1.46691 1.56705 1.48778 1.62320 1.12583 1.19222 0.95312 0.93542 0.80840 1.21627 1.25349 1.02421 1.06842 0.94495 1.25781 0.98646 0.95428 0.98912 1.70056 1.46220 1.16849 1.25736 0.85963 0.79843 0.79165 0.79646 1.20476 1.19829 1.15262 1.20951 0.98810 0.93396 0.82966 1.22626 0.98930 0.96309 1.02518 1.22867 0.98928 0.97071 1.02170 1.23081 1.03244 1.02834 0.89474 0.89615 0.87754 0.91501 0.92095 0.85442 0.88176 0.84856 0.79915 0.80175 0.96297 0.92449 0.92574 0.88101 0.88564 0.92082 0.87854 0.91254 0.88491 0.85730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.05 10.46 127.77 1.34 2.39 16 2 N -0.95 -14.26 3.63 -562.70 -2.04 -16.31 16 3 C 0.06 0.36 10.80 127.77 1.38 1.74 16 4 S 2.54 66.99 4.52 -37.15 -0.17 66.82 16 5 C -0.63 -9.49 10.27 113.37 1.16 -8.33 16 6 O -1.00 -38.35 17.47 -144.82 -2.53 -40.88 16 7 N -1.54 -53.43 9.61 37.02 0.36 -53.07 16 8 S 2.78 127.68 5.68 -37.15 -0.21 127.47 16 9 O -1.01 -42.36 14.90 -128.00 -1.91 -44.27 16 10 O -1.02 -59.30 16.46 -124.39 -2.05 -61.34 16 11 N -0.96 -44.17 2.86 -519.85 -1.48 -45.66 16 12 C 0.24 12.32 4.19 85.63 0.36 12.68 16 13 C -0.52 -32.51 9.52 25.60 0.24 -32.27 16 14 H 0.04 2.55 7.39 -2.91 -0.02 2.52 16 15 C 0.01 0.59 5.47 84.66 0.46 1.06 16 16 N -0.95 -62.81 13.96 21.45 0.30 -62.51 16 17 Si 0.93 46.44 27.47 68.60 1.88 48.32 16 18 H -0.28 -14.10 7.11 99.48 0.71 -13.39 16 19 H -0.27 -12.96 7.11 99.48 0.71 -12.26 16 20 H -0.23 -10.11 6.54 99.48 0.65 -9.46 16 21 C 0.16 5.98 5.65 86.38 0.49 6.47 16 22 C -0.18 -7.20 5.16 -10.80 -0.06 -7.26 16 23 C -0.17 -6.21 10.18 30.59 0.31 -5.89 16 24 C -0.15 -4.26 10.25 30.59 0.31 -3.95 16 25 H 0.09 0.64 8.14 -2.39 -0.02 0.63 16 26 H 0.10 0.74 7.92 -2.39 -0.02 0.72 16 27 H 0.07 1.29 7.22 -2.38 -0.02 1.27 16 28 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.13 0.02 7.79 -2.39 -0.02 0.00 16 30 H 0.10 -0.12 8.14 -2.39 -0.02 -0.14 16 31 H 0.13 2.79 6.69 -2.39 -0.02 2.78 16 32 H 0.18 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.18 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.02 1.04 7.04 -2.39 -0.02 1.02 16 35 H 0.06 2.70 7.06 -2.39 -0.02 2.68 16 36 H 0.27 16.37 8.31 -92.71 -0.77 15.60 16 37 H 0.10 3.01 7.61 -2.39 -0.02 2.99 16 38 H 0.10 3.04 7.74 -2.39 -0.02 3.02 16 39 H 0.06 2.91 7.91 -2.38 -0.02 2.89 16 40 H 0.10 3.38 8.03 -2.38 -0.02 3.36 16 41 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 42 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 43 H 0.12 2.69 8.14 -2.38 -0.02 2.67 16 Total: -1.00 -98.92 375.09 -0.91 -99.83 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 0.94 Total: 14.97 kcal Atomic # 6 Polarization: -39.38 SS G_CDS: 6.00 Total: -33.37 kcal Atomic # 7 Polarization: -174.67 SS G_CDS: -2.87 Total: -177.55 kcal Atomic # 8 Polarization: -140.01 SS G_CDS: -6.48 Total: -146.49 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 1.88 Total: 48.32 kcal Atomic # 16 Polarization: 194.67 SS G_CDS: -0.38 Total: 194.29 kcal Total: -98.92 -0.91 -99.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881860558.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.729 kcal (2) G-P(sol) polarization free energy of solvation -98.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds