Wall clock time and date at job start Tue Mar 31 2020 23:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46492 * 120.00139 * 2 1 4 4 S 1.65601 * 119.99710 * 179.97438 * 2 1 3 5 5 C 1.81398 * 108.33463 * 32.47175 * 4 2 1 6 6 O 1.42099 * 108.33403 * 267.53403 * 4 2 1 7 7 N 1.49354 * 108.72959 * 150.00214 * 4 2 1 8 8 S 1.65605 * 120.00050 * 179.97438 * 7 4 2 9 9 O 1.42108 * 106.39607 * 66.46108 * 8 7 4 10 10 O 1.42091 * 106.40403 * 293.54501 * 8 7 4 11 11 N 1.65597 * 107.21879 * 179.97438 * 8 7 4 12 12 C 1.36936 * 120.00499 * 268.71695 * 11 8 7 13 13 H 1.07997 * 119.99546 * 214.54123 * 12 11 8 14 14 C 1.38808 * 119.99925 * 34.53745 * 12 11 8 15 15 N 1.31621 * 119.99906 * 20.54586 * 14 12 11 16 16 Si 1.86799 * 119.99952 * 200.54979 * 14 12 11 17 17 H 1.48503 * 109.47295 * 60.00218 * 16 14 12 18 18 H 1.48502 * 109.46995 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47116 * 299.99899 * 16 14 12 20 20 C 1.46501 * 119.99579 * 88.71464 * 11 8 7 21 21 C 1.54965 * 110.92276 * 126.53700 * 20 11 8 22 22 C 1.54264 * 104.16064 * 156.29389 * 21 20 11 23 23 C 1.53878 * 106.64343 * 336.45183 * 22 21 20 24 24 C 1.54274 * 106.59313 * 359.96905 * 23 22 21 25 25 H 1.08995 * 109.47342 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47189 * 300.00181 * 1 2 3 27 27 H 1.09004 * 109.46913 * 60.00251 * 1 2 3 28 28 H 1.09000 * 109.47370 * 270.00148 * 3 2 1 29 29 H 1.09005 * 109.47118 * 29.99757 * 3 2 1 30 30 H 1.09000 * 109.47270 * 149.99587 * 3 2 1 31 31 H 1.09000 * 109.46953 * 178.89103 * 5 4 2 32 32 H 1.09003 * 109.47067 * 298.89277 * 5 4 2 33 33 H 1.09000 * 109.47329 * 58.89361 * 5 4 2 34 34 H 0.97006 * 119.99822 * 179.97438 * 15 14 12 35 35 H 1.08997 * 110.67504 * 3.23454 * 20 11 8 36 36 H 1.09000 * 110.47391 * 37.64766 * 21 20 11 37 37 H 1.08993 * 110.53612 * 274.97721 * 21 20 11 38 38 H 1.09003 * 110.03777 * 217.13847 * 22 21 20 39 39 H 1.09006 * 110.03118 * 95.75858 * 22 21 20 40 40 H 1.08997 * 110.03841 * 119.25520 * 23 22 21 41 41 H 1.09003 * 110.03330 * 240.64552 * 23 22 21 42 42 H 1.09004 * 110.47926 * 142.28987 * 24 23 22 43 43 H 1.08992 * 110.48796 * 264.79832 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 16 2.2930 -1.4342 0.0006 5 6 1.3201 -2.6551 -0.9233 6 8 2.5667 -1.7917 1.3484 7 7 3.5936 -1.2374 -0.7066 8 16 4.6486 -2.5037 -0.8673 9 8 4.0159 -3.4471 -1.7212 10 8 5.0980 -2.8204 0.4429 11 7 5.9694 -1.9398 -1.6918 12 6 6.0132 -2.0283 -3.0576 13 1 6.9535 -2.2088 -3.5571 14 6 4.8490 -1.8859 -3.8000 15 7 3.8040 -1.2813 -3.2757 16 14 4.7653 -2.5526 -5.5429 17 1 5.0017 -4.0185 -5.5242 18 1 3.4231 -2.2755 -6.1150 19 1 5.8041 -1.8942 -6.3751 20 6 7.0911 -1.3461 -0.9599 21 6 8.4269 -2.0316 -1.3435 22 6 9.5012 -0.9735 -1.0178 23 6 8.7976 0.3946 -1.0539 24 6 7.3196 0.1208 -1.4013 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 2.3792 1.5833 -1.0276 29 1 1.6084 2.0283 0.5138 30 1 3.1499 1.1383 0.5139 31 1 1.8583 -3.6025 -0.9512 32 1 0.3571 -2.7985 -0.4331 33 1 1.1604 -2.2978 -1.9406 34 1 2.9905 -1.1815 -3.7947 35 1 6.9228 -1.4042 0.1154 36 1 8.4399 -2.2736 -2.4062 37 1 8.5817 -2.9292 -0.7450 38 1 10.2949 -1.0050 -1.7642 39 1 9.9148 -1.1545 -0.0256 40 1 8.8689 0.8771 -0.0792 41 1 9.2503 1.0272 -1.8175 42 1 6.6663 0.7928 -0.8449 43 1 7.1532 0.2292 -2.4730 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881911600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:52 Heat of formation + Delta-G solvation = -73.953158 kcal Electronic energy + Delta-G solvation = -28400.812225 eV Core-core repulsion = 24543.059318 eV Total energy + Delta-G solvation = -3857.752907 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -39.26641 -37.92376 -37.49674 -37.16960 -36.39536 -35.66770 -33.85033 -32.79222 -30.93074 -29.38297 -28.58755 -28.22869 -25.97644 -25.67201 -21.32380 -21.27111 -20.84299 -20.13119 -18.87727 -18.25086 -18.02396 -17.68798 -17.14310 -16.72436 -16.16099 -16.00933 -15.87389 -15.61373 -15.17823 -14.78826 -14.41287 -14.30463 -14.23958 -14.08078 -13.71963 -13.49791 -13.39953 -13.30967 -13.03520 -12.90503 -12.85327 -12.69794 -12.48157 -12.39015 -12.30589 -12.28681 -12.08286 -11.93271 -11.79639 -11.70579 -11.19200 -11.05100 -10.88123 -10.79793 -10.57069 -10.10840 -9.40802 -7.96016 -5.65047 -1.41023 0.39720 1.49362 1.52923 1.57558 1.61636 2.20444 2.49541 2.79003 3.05397 3.28054 3.61732 3.76453 3.89220 3.95738 3.97395 4.13792 4.31522 4.38743 4.40784 4.55955 4.59258 4.73528 4.76784 4.78085 4.85734 4.86981 4.88561 4.99521 5.00296 5.07334 5.12780 5.24538 5.25278 5.36582 5.49890 5.55416 5.65480 5.81471 5.97997 6.63499 7.35973 7.74026 9.04656 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011965 B = 0.006522 C = 0.005288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.581599 B = 4292.359462 C = 5293.921606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.951 5.951 3 C 0.107 3.893 4 S 2.544 3.456 5 C -0.635 4.635 6 O -1.013 7.013 7 N -1.478 6.478 8 S 2.784 3.216 9 O -1.026 7.026 10 O -1.072 7.072 11 N -0.841 5.841 12 C -0.317 4.317 13 H 0.084 0.916 14 C 0.002 3.998 15 N -0.852 5.852 16 Si 0.962 3.038 17 H -0.289 1.289 18 H -0.279 1.279 19 H -0.268 1.268 20 C 0.134 3.866 21 C -0.132 4.132 22 C -0.112 4.112 23 C -0.115 4.115 24 C -0.115 4.115 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.063 0.937 29 H 0.111 0.889 30 H 0.049 0.951 31 H 0.126 0.874 32 H 0.174 0.826 33 H 0.158 0.842 34 H 0.265 0.735 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.048 0.952 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.306 6.947 2.950 10.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.789 5.789 3 C -0.037 4.037 4 S 2.643 3.357 5 C -0.794 4.794 6 O -0.990 6.990 7 N -1.499 6.499 8 S 2.795 3.205 9 O -1.008 7.008 10 O -1.054 7.054 11 N -0.673 5.673 12 C -0.449 4.449 13 H 0.101 0.899 14 C -0.203 4.203 15 N -0.492 5.492 16 Si 0.789 3.211 17 H -0.216 1.216 18 H -0.205 1.205 19 H -0.193 1.193 20 C 0.025 3.975 21 C -0.171 4.171 22 C -0.150 4.150 23 C -0.153 4.153 24 C -0.154 4.154 25 H 0.107 0.893 26 H 0.115 0.885 27 H 0.113 0.887 28 H 0.081 0.919 29 H 0.130 0.870 30 H 0.068 0.932 31 H 0.145 0.855 32 H 0.192 0.808 33 H 0.177 0.823 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.067 0.933 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.272 6.456 3.933 10.490 hybrid contribution -0.382 -0.729 -1.239 1.487 sum -7.654 5.728 2.694 9.932 Atomic orbital electron populations 1.22279 0.75055 1.04886 1.05837 1.55731 1.15167 1.17071 1.90956 1.21601 0.95879 0.83097 1.03110 1.06640 0.76480 0.76975 0.75635 1.30467 1.16730 1.15623 1.16629 1.93551 1.82493 1.83556 1.39400 1.76355 1.33639 1.63115 1.76794 1.01375 0.75753 0.72263 0.71100 1.93393 1.76525 1.63051 1.67830 1.93480 1.82896 1.85018 1.44055 1.52304 1.30024 1.71658 1.13350 1.18773 0.96274 1.49790 0.80104 0.89889 1.25932 0.96894 0.95459 1.02007 1.70141 1.03890 1.37115 1.38038 0.85479 0.77460 0.78315 0.79861 1.21596 1.20457 1.19310 1.21884 0.87659 0.94103 0.93806 1.22655 0.94470 0.98258 1.01759 1.22046 0.97067 0.93737 1.02155 1.22082 0.93983 0.97332 1.01945 1.22466 0.96474 0.94979 1.01527 0.89300 0.88529 0.88711 0.91864 0.87046 0.93171 0.85519 0.80845 0.82336 0.92466 0.92131 0.91303 0.92887 0.90299 0.90895 0.91032 0.90563 0.93307 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.91 10.59 127.77 1.35 2.27 16 2 N -0.95 -25.28 3.64 -562.70 -2.05 -27.33 16 3 C 0.11 2.74 10.40 127.77 1.33 4.07 16 4 S 2.54 97.51 4.55 -37.15 -0.17 97.34 16 5 C -0.64 -18.96 9.36 113.37 1.06 -17.90 16 6 O -1.01 -47.24 17.47 -144.79 -2.53 -49.77 16 7 N -1.48 -71.23 8.54 37.02 0.32 -70.91 16 8 S 2.78 155.76 4.84 -37.15 -0.18 155.58 16 9 O -1.03 -58.84 13.42 -128.00 -1.72 -60.56 16 10 O -1.07 -64.72 16.10 -124.38 -2.00 -66.73 16 11 N -0.84 -45.43 2.95 -316.74 -0.93 -46.36 16 12 C -0.32 -17.27 7.84 84.03 0.66 -16.61 16 13 H 0.08 4.38 6.40 -2.91 -0.02 4.36 16 14 C 0.00 0.12 4.15 84.86 0.35 0.47 16 15 N -0.85 -44.51 9.96 21.65 0.22 -44.30 16 16 Si 0.96 43.66 29.60 68.60 2.03 45.70 16 17 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 18 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 20 C 0.13 6.31 3.30 46.31 0.15 6.46 16 21 C -0.13 -5.28 6.36 31.69 0.20 -5.07 16 22 C -0.11 -3.42 6.80 31.32 0.21 -3.20 16 23 C -0.12 -3.57 6.80 31.32 0.21 -3.36 16 24 C -0.11 -4.72 6.39 31.67 0.20 -4.52 16 25 H 0.09 0.89 6.07 -2.39 -0.01 0.88 16 26 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.11 1.84 8.07 -2.38 -0.02 1.82 16 30 H 0.05 1.54 7.99 -2.39 -0.02 1.52 16 31 H 0.13 4.53 6.69 -2.39 -0.02 4.51 16 32 H 0.17 2.97 6.98 -2.39 -0.02 2.96 16 33 H 0.16 4.45 8.14 -2.39 -0.02 4.43 16 34 H 0.27 12.94 8.31 -92.70 -0.77 12.17 16 35 H 0.06 3.01 7.00 -2.39 -0.02 3.00 16 36 H 0.07 2.87 6.28 -2.39 -0.01 2.85 16 37 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 40 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 43 H 0.06 2.86 7.31 -2.39 -0.02 2.84 16 Total: -1.00 -82.63 356.88 -0.28 -82.92 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 1.00 Total: 21.83 kcal Atomic # 6 Polarization: -43.13 SS G_CDS: 5.73 Total: -37.40 kcal Atomic # 7 Polarization: -186.45 SS G_CDS: -2.45 Total: -188.90 kcal Atomic # 8 Polarization: -170.81 SS G_CDS: -6.25 Total: -177.06 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: 253.27 SS G_CDS: -0.35 Total: 252.92 kcal Total: -82.63 -0.28 -82.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881911600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.962 kcal (2) G-P(sol) polarization free energy of solvation -82.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds