Wall clock time and date at job start Tue Mar 31 2020 23:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46502 * 119.99783 * 2 1 4 4 S 1.65591 * 120.00119 * 180.02562 * 2 1 3 5 5 C 1.81402 * 108.33358 * 357.52728 * 4 2 1 6 6 O 1.42093 * 108.33543 * 122.46781 * 4 2 1 7 7 N 1.49356 * 108.73221 * 239.99931 * 4 2 1 8 8 S 1.65600 * 120.00221 * 179.97438 * 7 4 2 9 9 O 1.42105 * 106.40356 * 293.53872 * 8 7 4 10 10 O 1.42101 * 106.39953 * 66.45867 * 8 7 4 11 11 N 1.65595 * 107.22041 * 180.02562 * 8 7 4 12 12 C 1.46922 * 120.63481 * 89.99771 * 11 8 7 13 13 C 1.53195 * 108.77528 * 126.37125 * 12 11 8 14 14 C 1.53039 * 109.31251 * 54.63730 * 13 12 11 15 15 C 1.53038 * 109.53821 * 298.63133 * 14 13 12 16 16 H 1.08997 * 109.50073 * 301.41837 * 15 14 13 17 17 C 1.50696 * 109.49835 * 181.31579 * 15 14 13 18 18 H 1.07995 * 120.00361 * 275.06234 * 17 15 14 19 19 C 1.37878 * 119.99879 * 95.05950 * 17 15 14 20 20 N 1.31512 * 120.00355 * 186.20344 * 19 17 15 21 21 Si 1.86799 * 119.99784 * 6.19919 * 19 17 15 22 22 H 1.48500 * 109.47085 * 84.77249 * 21 19 17 23 23 H 1.48506 * 109.47331 * 204.77117 * 21 19 17 24 24 H 1.48501 * 109.47380 * 324.77307 * 21 19 17 25 25 C 1.46934 * 120.62742 * 269.72127 * 11 8 7 26 26 H 1.09000 * 109.46881 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47038 * 300.00186 * 1 2 3 28 28 H 1.08996 * 109.47257 * 59.99510 * 1 2 3 29 29 H 1.08999 * 109.47290 * 269.99915 * 3 2 1 30 30 H 1.09001 * 109.46976 * 30.00352 * 3 2 1 31 31 H 1.08995 * 109.47204 * 150.00198 * 3 2 1 32 32 H 1.09003 * 109.47435 * 181.10873 * 5 4 2 33 33 H 1.09005 * 109.47044 * 61.10729 * 5 4 2 34 34 H 1.08994 * 109.47249 * 301.11303 * 5 4 2 35 35 H 1.09001 * 109.59144 * 246.15824 * 12 11 8 36 36 H 1.09002 * 109.58384 * 6.43916 * 12 11 8 37 37 H 1.09003 * 109.49343 * 174.59373 * 13 12 11 38 38 H 1.09001 * 109.49437 * 294.68128 * 13 12 11 39 39 H 1.08996 * 109.45919 * 58.65684 * 14 13 12 40 40 H 1.09005 * 109.45517 * 178.62770 * 14 13 12 41 41 H 0.96999 * 120.00255 * 180.02562 * 20 19 17 42 42 H 1.08998 * 109.58970 * 353.41771 * 25 11 8 43 43 H 1.09003 * 109.58549 * 113.83953 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2930 -1.4340 -0.0006 5 6 1.0885 -2.7884 0.0730 6 8 3.1436 -1.4586 -1.1386 7 7 3.1453 -1.4963 1.2243 8 16 4.0971 -2.8223 1.5043 9 8 3.2121 -3.9101 1.7345 10 8 5.0870 -2.8281 0.4848 11 7 4.8957 -2.5601 2.9310 12 6 4.3082 -2.9889 4.2076 13 6 5.3250 -3.8622 4.9496 14 6 6.6427 -3.0967 5.0898 15 6 7.2010 -2.7800 3.7005 16 1 7.3537 -3.7080 3.1495 17 6 8.5146 -2.0547 3.8396 18 1 8.5282 -0.9836 3.9763 19 6 9.6991 -2.7587 3.7922 20 7 10.8378 -2.1470 4.0348 21 14 9.6866 -4.5815 3.3838 22 1 9.6821 -4.7583 1.9093 23 1 10.8964 -5.2253 3.9558 24 1 8.4714 -5.2099 3.9614 25 6 6.2081 -1.8995 2.9438 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 2.3792 1.5834 -1.0276 30 1 1.6084 2.0284 0.5139 31 1 3.1499 1.1385 0.5138 32 1 1.6152 -3.7425 0.0934 33 1 0.4428 -2.7485 -0.8043 34 1 0.4836 -2.6881 0.9741 35 1 4.0683 -2.1139 4.8118 36 1 3.4006 -3.5619 4.0179 37 1 4.9397 -4.1079 5.9392 38 1 5.4953 -4.7800 4.3869 39 1 6.4669 -2.1672 5.6311 40 1 7.3602 -3.7066 5.6389 41 1 11.6712 -2.6422 4.0011 42 1 6.5550 -1.7561 1.9205 43 1 6.1263 -0.9338 3.4427 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882386743.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:46 Heat of formation + Delta-G solvation = -58.504928 kcal Electronic energy + Delta-G solvation = -27221.085619 eV Core-core repulsion = 23364.002597 eV Total energy + Delta-G solvation = -3857.083022 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -37.80310 -37.03459 -36.83338 -36.62594 -35.55501 -33.28274 -33.00795 -31.40275 -30.68395 -30.40316 -28.13733 -25.28828 -25.09843 -23.74050 -21.51443 -20.35696 -19.33191 -18.39860 -17.90513 -17.38119 -17.08458 -16.69813 -16.54489 -15.59936 -15.35761 -14.79330 -14.53164 -14.21290 -13.98202 -13.95851 -13.73478 -13.54503 -13.13362 -13.04689 -12.87532 -12.77880 -12.60897 -12.48560 -12.42891 -11.88417 -11.81393 -11.76572 -11.57076 -11.34332 -11.12801 -10.92449 -10.62591 -10.54609 -10.35307 -10.21967 -9.87498 -9.73386 -9.62661 -9.46751 -8.94019 -8.45140 -8.24271 -6.01600 -4.00113 -0.92108 0.99444 1.98222 2.90253 3.28918 3.39599 3.46256 3.50498 3.56469 3.90145 4.19559 4.31265 4.51216 4.64486 4.73210 4.89415 4.95852 5.03984 5.17810 5.21504 5.24599 5.32855 5.34998 5.47859 5.59077 5.73851 5.78266 5.96521 6.11067 6.23423 6.40523 6.55847 6.61627 6.73047 6.89449 7.05144 7.19524 7.39077 7.54354 7.85695 8.57447 9.03296 9.62484 11.11304 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.020542 B = 0.003754 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.714669 B = 7457.156058 C = 7700.253493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.959 5.959 3 C 0.096 3.904 4 S 2.560 3.440 5 C -0.653 4.653 6 O -0.936 6.936 7 N -1.528 6.528 8 S 2.775 3.225 9 O -1.011 7.011 10 O -0.971 6.971 11 N -0.972 5.972 12 C 0.128 3.872 13 C -0.137 4.137 14 C -0.108 4.108 15 C 0.004 3.996 16 H 0.034 0.966 17 C -0.509 4.509 18 H 0.076 0.924 19 C 0.075 3.925 20 N -0.899 5.899 21 Si 0.871 3.129 22 H -0.273 1.273 23 H -0.290 1.290 24 H -0.263 1.263 25 C 0.133 3.867 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.156 0.844 33 H 0.137 0.863 34 H 0.147 0.853 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.264 0.736 42 H 0.085 0.915 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.574 3.742 -6.347 28.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.796 5.796 3 C -0.048 4.048 4 S 2.657 3.343 5 C -0.811 4.811 6 O -0.913 6.913 7 N -1.549 6.549 8 S 2.783 3.217 9 O -0.994 6.994 10 O -0.953 6.953 11 N -0.815 5.815 12 C 0.002 3.998 13 C -0.176 4.176 14 C -0.146 4.146 15 C -0.017 4.017 16 H 0.053 0.947 17 C -0.548 4.548 18 H 0.094 0.906 19 C -0.127 4.127 20 N -0.537 5.537 21 Si 0.698 3.302 22 H -0.199 1.199 23 H -0.216 1.216 24 H -0.188 1.188 25 C 0.009 3.991 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.174 0.826 33 H 0.155 0.845 34 H 0.166 0.834 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.103 0.897 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -26.710 3.451 -7.218 27.883 hybrid contribution -0.344 -1.127 0.174 1.191 sum -27.054 2.325 -7.044 28.053 Atomic orbital electron populations 1.21957 0.77778 1.03517 1.04170 1.55880 1.14125 1.18631 1.90976 1.21706 0.97372 0.83042 1.02676 1.06453 0.76314 0.76836 0.74734 1.30671 1.19104 1.18862 1.12431 1.93639 1.58898 1.84794 1.53965 1.76878 1.54341 1.64395 1.59262 1.01733 0.73763 0.72025 0.74201 1.93561 1.66911 1.52549 1.86332 1.93688 1.58945 1.86405 1.56296 1.57307 1.29848 1.74015 1.20357 1.21345 0.95845 0.98164 0.84418 1.22009 0.97497 0.98978 0.99143 1.21773 0.93813 0.98873 1.00167 1.19405 0.94259 0.95908 0.92093 0.94740 1.20890 0.88015 0.95957 1.49943 0.90568 1.25013 0.95456 0.97993 0.94278 1.69902 0.97957 1.36748 1.49050 0.86943 0.77443 0.86251 0.79526 1.19877 1.21607 1.18790 1.21736 0.79032 0.95983 1.02355 0.90411 0.90524 0.90538 0.91826 0.89916 0.89446 0.82585 0.84498 0.83412 0.91763 0.90266 0.91903 0.92329 0.92564 0.92677 0.92654 0.89675 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.22 10.74 59.85 0.64 0.86 16 2 N -0.96 -7.39 3.64 -129.20 -0.47 -7.86 16 3 C 0.10 0.73 10.78 59.85 0.64 1.37 16 4 S 2.56 30.63 4.52 -98.05 -0.44 30.19 16 5 C -0.65 -4.71 8.42 101.05 0.85 -3.86 16 6 O -0.94 -15.63 17.46 -39.58 -0.69 -16.32 16 7 N -1.53 -23.80 10.93 60.35 0.66 -23.15 16 8 S 2.78 54.36 5.82 -98.05 -0.57 53.79 16 9 O -1.01 -18.54 14.51 -57.17 -0.83 -19.37 16 10 O -0.97 -22.94 16.07 -60.95 -0.98 -23.92 16 11 N -0.97 -19.36 3.35 -113.76 -0.38 -19.74 16 12 C 0.13 2.16 6.48 -3.71 -0.02 2.13 16 13 C -0.14 -2.44 6.08 -26.61 -0.16 -2.60 16 14 C -0.11 -2.31 5.15 -26.69 -0.14 -2.45 16 15 C 0.00 0.10 1.92 -91.87 -0.18 -0.07 16 16 H 0.03 0.89 5.25 -51.93 -0.27 0.62 16 17 C -0.51 -14.54 8.86 -34.44 -0.31 -14.84 16 18 H 0.08 2.31 8.06 -52.49 -0.42 1.88 16 19 C 0.07 2.20 5.47 -17.82 -0.10 2.10 16 20 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 21 Si 0.87 22.59 27.02 -169.99 -4.59 18.00 16 22 H -0.27 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 24 H -0.26 -6.53 6.77 56.52 0.38 -6.15 16 25 C 0.13 2.98 5.71 -3.93 -0.02 2.96 16 26 H 0.08 0.06 5.42 -51.93 -0.28 -0.22 16 27 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 28 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.39 8.07 -51.93 -0.42 -0.03 16 31 H 0.09 0.83 7.97 -51.93 -0.41 0.42 16 32 H 0.16 1.43 6.69 -51.92 -0.35 1.09 16 33 H 0.14 0.40 7.74 -51.92 -0.40 0.00 16 34 H 0.15 0.66 7.84 -51.93 -0.41 0.25 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.08 1.19 6.92 -51.93 -0.36 0.83 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 42 H 0.08 2.02 6.91 -51.93 -0.36 1.66 16 43 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 360.34 15.07 5.43 5.43 Total: -1.00 -39.37 360.34 -7.53 -46.89 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -6.64 Total: -2.44 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: 1.21 Total: -14.39 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: 0.58 Total: -77.85 kcal Atomic # 8 Polarization: -57.11 SS G_CDS: -2.50 Total: -59.61 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.59 Total: 18.00 kcal Atomic # 16 Polarization: 84.99 SS G_CDS: -1.01 Total: 83.98 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -39.37 -7.53 -46.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882386743.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.615 kcal (2) G-P(sol) polarization free energy of solvation -39.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds