Wall clock time and date at job start Tue Mar 31 2020 23:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46502 * 119.99783 * 2 1 4 4 S 1.65591 * 120.00119 * 180.02562 * 2 1 3 5 5 C 1.81402 * 108.33358 * 357.52728 * 4 2 1 6 6 O 1.42093 * 108.33543 * 122.46781 * 4 2 1 7 7 N 1.49356 * 108.73221 * 239.99931 * 4 2 1 8 8 S 1.65600 * 120.00221 * 179.97438 * 7 4 2 9 9 O 1.42105 * 106.40356 * 293.53872 * 8 7 4 10 10 O 1.42101 * 106.39953 * 66.45867 * 8 7 4 11 11 N 1.65595 * 107.22041 * 180.02562 * 8 7 4 12 12 C 1.46922 * 120.63481 * 89.99771 * 11 8 7 13 13 C 1.53195 * 108.77528 * 126.37125 * 12 11 8 14 14 C 1.53039 * 109.31251 * 54.63730 * 13 12 11 15 15 C 1.53038 * 109.53821 * 298.63133 * 14 13 12 16 16 H 1.08997 * 109.50073 * 301.41837 * 15 14 13 17 17 C 1.50696 * 109.49835 * 181.31579 * 15 14 13 18 18 H 1.07995 * 120.00361 * 275.06234 * 17 15 14 19 19 C 1.37878 * 119.99879 * 95.05950 * 17 15 14 20 20 N 1.31512 * 120.00355 * 186.20344 * 19 17 15 21 21 Si 1.86799 * 119.99784 * 6.19919 * 19 17 15 22 22 H 1.48500 * 109.47085 * 84.77249 * 21 19 17 23 23 H 1.48506 * 109.47331 * 204.77117 * 21 19 17 24 24 H 1.48501 * 109.47380 * 324.77307 * 21 19 17 25 25 C 1.46934 * 120.62742 * 269.72127 * 11 8 7 26 26 H 1.09000 * 109.46881 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47038 * 300.00186 * 1 2 3 28 28 H 1.08996 * 109.47257 * 59.99510 * 1 2 3 29 29 H 1.08999 * 109.47290 * 269.99915 * 3 2 1 30 30 H 1.09001 * 109.46976 * 30.00352 * 3 2 1 31 31 H 1.08995 * 109.47204 * 150.00198 * 3 2 1 32 32 H 1.09003 * 109.47435 * 181.10873 * 5 4 2 33 33 H 1.09005 * 109.47044 * 61.10729 * 5 4 2 34 34 H 1.08994 * 109.47249 * 301.11303 * 5 4 2 35 35 H 1.09001 * 109.59144 * 246.15824 * 12 11 8 36 36 H 1.09002 * 109.58384 * 6.43916 * 12 11 8 37 37 H 1.09003 * 109.49343 * 174.59373 * 13 12 11 38 38 H 1.09001 * 109.49437 * 294.68128 * 13 12 11 39 39 H 1.08996 * 109.45919 * 58.65684 * 14 13 12 40 40 H 1.09005 * 109.45517 * 178.62770 * 14 13 12 41 41 H 0.96999 * 120.00255 * 180.02562 * 20 19 17 42 42 H 1.08998 * 109.58970 * 353.41771 * 25 11 8 43 43 H 1.09003 * 109.58549 * 113.83953 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2930 -1.4340 -0.0006 5 6 1.0885 -2.7884 0.0730 6 8 3.1436 -1.4586 -1.1386 7 7 3.1453 -1.4963 1.2243 8 16 4.0971 -2.8223 1.5043 9 8 3.2121 -3.9101 1.7345 10 8 5.0870 -2.8281 0.4848 11 7 4.8957 -2.5601 2.9310 12 6 4.3082 -2.9889 4.2076 13 6 5.3250 -3.8622 4.9496 14 6 6.6427 -3.0967 5.0898 15 6 7.2010 -2.7800 3.7005 16 1 7.3537 -3.7080 3.1495 17 6 8.5146 -2.0547 3.8396 18 1 8.5282 -0.9836 3.9763 19 6 9.6991 -2.7587 3.7922 20 7 10.8378 -2.1470 4.0348 21 14 9.6866 -4.5815 3.3838 22 1 9.6821 -4.7583 1.9093 23 1 10.8964 -5.2253 3.9558 24 1 8.4714 -5.2099 3.9614 25 6 6.2081 -1.8995 2.9438 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 2.3792 1.5834 -1.0276 30 1 1.6084 2.0284 0.5139 31 1 3.1499 1.1385 0.5138 32 1 1.6152 -3.7425 0.0934 33 1 0.4428 -2.7485 -0.8043 34 1 0.4836 -2.6881 0.9741 35 1 4.0683 -2.1139 4.8118 36 1 3.4006 -3.5619 4.0179 37 1 4.9397 -4.1079 5.9392 38 1 5.4953 -4.7800 4.3869 39 1 6.4669 -2.1672 5.6311 40 1 7.3602 -3.7066 5.6389 41 1 11.6712 -2.6422 4.0011 42 1 6.5550 -1.7561 1.9205 43 1 6.1263 -0.9338 3.4427 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882386743.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:45 Heat of formation + Delta-G solvation = -92.355390 kcal Electronic energy + Delta-G solvation = -27222.553485 eV Core-core repulsion = 23364.002597 eV Total energy + Delta-G solvation = -3858.550888 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.44523 -38.46177 -37.81224 -37.35479 -37.03457 -35.13198 -34.31230 -33.14698 -32.18173 -31.27915 -28.58733 -27.11450 -25.81662 -25.35169 -23.20699 -21.54652 -20.95791 -19.64181 -19.22204 -18.76205 -18.51435 -18.05631 -17.59913 -16.90482 -16.50220 -15.92345 -15.66116 -15.50527 -15.36057 -14.96819 -14.71289 -14.63732 -14.53104 -14.50343 -14.32742 -14.14599 -13.76222 -13.44393 -13.39345 -13.30102 -13.00769 -12.94869 -12.89248 -12.84792 -12.76165 -12.55181 -12.45136 -11.89178 -11.82221 -11.69182 -11.45676 -11.38220 -11.29193 -10.94826 -10.66044 -10.27992 -9.84335 -8.30837 -6.32195 -1.74161 -0.34080 1.21596 1.29662 1.33866 1.42527 1.74777 1.92015 2.32994 2.71452 3.05432 3.46142 3.49405 3.52496 3.77665 3.80003 3.94947 4.15704 4.24526 4.33008 4.38546 4.51304 4.52256 4.61443 4.69525 4.71907 4.76310 4.81578 4.89141 4.90936 5.01818 5.02063 5.11525 5.20181 5.30153 5.31250 5.54372 5.62656 5.71104 5.81683 6.30362 6.73414 7.32661 8.85734 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.020542 B = 0.003754 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.714669 B = 7457.156058 C = 7700.253493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.944 5.944 3 C 0.086 3.914 4 S 2.528 3.472 5 C -0.623 4.623 6 O -1.002 7.002 7 N -1.548 6.548 8 S 2.782 3.218 9 O -1.004 7.004 10 O -1.028 7.028 11 N -0.982 5.982 12 C 0.120 3.880 13 C -0.133 4.133 14 C -0.104 4.104 15 C -0.002 4.002 16 H 0.020 0.980 17 C -0.512 4.512 18 H 0.044 0.956 19 C 0.020 3.980 20 N -0.943 5.943 21 Si 0.924 3.076 22 H -0.279 1.279 23 H -0.278 1.278 24 H -0.244 1.244 25 C 0.143 3.857 26 H 0.107 0.893 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.067 0.933 30 H 0.117 0.883 31 H 0.057 0.943 32 H 0.143 0.857 33 H 0.191 0.809 34 H 0.188 0.812 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.049 0.951 39 H 0.062 0.938 40 H 0.044 0.956 41 H 0.266 0.734 42 H 0.058 0.942 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.679 2.705 -5.737 33.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.783 5.783 3 C -0.058 4.058 4 S 2.631 3.369 5 C -0.784 4.784 6 O -0.979 6.979 7 N -1.570 6.570 8 S 2.789 3.211 9 O -0.987 6.987 10 O -1.010 7.010 11 N -0.824 5.824 12 C -0.004 4.004 13 C -0.172 4.172 14 C -0.143 4.143 15 C -0.023 4.023 16 H 0.038 0.962 17 C -0.550 4.550 18 H 0.062 0.938 19 C -0.177 4.177 20 N -0.583 5.583 21 Si 0.749 3.251 22 H -0.205 1.205 23 H -0.204 1.204 24 H -0.168 1.168 25 C 0.018 3.982 26 H 0.125 0.875 27 H 0.112 0.888 28 H 0.115 0.885 29 H 0.085 0.915 30 H 0.135 0.865 31 H 0.076 0.924 32 H 0.161 0.839 33 H 0.208 0.792 34 H 0.206 0.794 35 H 0.107 0.893 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -31.813 2.427 -6.585 32.577 hybrid contribution 0.966 -0.653 -0.093 1.169 sum -30.847 1.774 -6.678 31.611 Atomic orbital electron populations 1.22493 0.74215 1.06123 1.06140 1.55701 1.15826 1.16424 1.90325 1.21853 0.97053 0.83800 1.03097 1.07140 0.77872 0.79137 0.72728 1.30476 1.17288 1.13447 1.17199 1.93587 1.62943 1.86233 1.55135 1.76466 1.57138 1.63663 1.59693 1.01224 0.73678 0.72757 0.73405 1.93549 1.66119 1.52921 1.86091 1.93618 1.61542 1.87554 1.58331 1.57224 1.29116 1.74238 1.21799 1.21670 0.96125 0.99378 0.83264 1.22005 0.95646 0.98021 1.01557 1.21620 0.95659 0.99708 0.97279 1.19426 0.93233 0.95038 0.94570 0.96177 1.21165 0.90221 0.94828 1.48815 0.93789 1.25753 0.95138 1.02308 0.94541 1.70020 0.98670 1.38572 1.51083 0.86079 0.78573 0.81548 0.78927 1.20496 1.20401 1.16763 1.21308 0.80376 0.96063 1.00498 0.87498 0.88762 0.88465 0.91480 0.86486 0.92407 0.83869 0.79169 0.79411 0.89340 0.87786 0.87742 0.93265 0.91884 0.93749 0.92467 0.92344 0.91208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.06 10.74 127.77 1.37 1.43 16 2 N -0.94 -12.14 3.64 -562.68 -2.05 -14.19 16 3 C 0.09 1.22 10.78 127.77 1.38 2.59 16 4 S 2.53 57.06 4.52 -37.15 -0.17 56.90 16 5 C -0.62 -5.98 8.42 113.37 0.95 -5.03 16 6 O -1.00 -34.66 17.46 -144.83 -2.53 -37.19 16 7 N -1.55 -47.68 10.93 37.02 0.40 -47.28 16 8 S 2.78 109.31 5.82 -37.15 -0.22 109.10 16 9 O -1.00 -35.13 14.51 -128.00 -1.86 -36.99 16 10 O -1.03 -51.18 16.07 -124.39 -2.00 -53.18 16 11 N -0.98 -38.78 3.35 -513.82 -1.72 -40.50 16 12 C 0.12 3.72 6.48 86.36 0.56 4.27 16 13 C -0.13 -4.38 6.08 30.67 0.19 -4.19 16 14 C -0.10 -4.37 5.15 30.62 0.16 -4.21 16 15 C 0.00 -0.10 1.92 -11.61 -0.02 -0.12 16 16 H 0.02 1.06 5.25 -2.39 -0.01 1.05 16 17 C -0.51 -30.46 8.86 25.60 0.23 -30.24 16 18 H 0.04 2.82 8.06 -2.91 -0.02 2.80 16 19 C 0.02 1.24 5.47 84.66 0.46 1.70 16 20 N -0.94 -60.75 13.96 21.45 0.30 -60.46 16 21 Si 0.92 47.55 27.02 68.60 1.85 49.41 16 22 H -0.28 -14.52 7.11 99.48 0.71 -13.82 16 23 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 24 H -0.24 -11.69 6.77 99.48 0.67 -11.02 16 25 C 0.14 6.64 5.71 86.22 0.49 7.13 16 26 H 0.11 -0.52 5.42 -2.39 -0.01 -0.54 16 27 H 0.09 -0.15 8.14 -2.39 -0.02 -0.17 16 28 H 0.10 -0.21 8.14 -2.39 -0.02 -0.22 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.12 0.80 8.07 -2.39 -0.02 0.78 16 31 H 0.06 1.17 7.97 -2.39 -0.02 1.15 16 32 H 0.14 2.10 6.69 -2.39 -0.02 2.08 16 33 H 0.19 -0.14 7.74 -2.39 -0.02 -0.16 16 34 H 0.19 0.41 7.84 -2.39 -0.02 0.39 16 35 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.10 2.73 6.92 -2.39 -0.02 2.71 16 37 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.06 2.51 8.14 -2.39 -0.02 2.50 16 40 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 41 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 42 H 0.06 2.98 6.91 -2.39 -0.02 2.96 16 43 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -94.60 360.34 -1.25 -95.84 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: 0.97 Total: 5.20 kcal Atomic # 6 Polarization: -32.43 SS G_CDS: 5.77 Total: -26.67 kcal Atomic # 7 Polarization: -159.35 SS G_CDS: -3.07 Total: -162.42 kcal Atomic # 8 Polarization: -120.97 SS G_CDS: -6.39 Total: -127.35 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 1.85 Total: 49.41 kcal Atomic # 16 Polarization: 166.38 SS G_CDS: -0.38 Total: 165.99 kcal Total: -94.60 -1.25 -95.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882386743.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.488 kcal (2) G-P(sol) polarization free energy of solvation -94.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds