Wall clock time and date at job start Tue Mar 31 2020 22:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 116.99557 * 2 1 4 4 O 1.20824 * 120.00124 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99836 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.82393 * 304.12207 * 5 3 2 7 7 O 1.43240 * 109.83105 * 183.13789 * 5 3 2 8 8 C 1.43647 * 109.97044 * 242.20342 * 7 5 3 9 9 H 1.08999 * 110.31147 * 94.48648 * 8 7 5 10 10 C 1.50702 * 110.39064 * 216.61803 * 8 7 5 11 11 O 1.21284 * 119.99776 * 0.75522 * 10 8 7 12 12 N 1.34775 * 120.00121 * 180.76567 * 10 8 7 13 13 C 1.46500 * 120.00146 * 179.97438 * 12 10 8 14 14 H 1.08999 * 109.46760 * 324.99524 * 13 12 10 15 15 C 1.50701 * 109.46878 * 204.99604 * 13 12 10 16 16 H 1.07993 * 120.00398 * 359.97438 * 15 13 12 17 17 C 1.37877 * 119.99710 * 180.02562 * 15 13 12 18 18 N 1.31513 * 119.99964 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 120.00062 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47157 * 89.99678 * 19 17 15 21 21 H 1.48497 * 109.47041 * 209.99723 * 19 17 15 22 22 H 1.48495 * 109.46857 * 329.99645 * 19 17 15 23 23 C 1.53005 * 109.47198 * 84.99458 * 13 12 10 24 24 F 1.39900 * 109.46642 * 59.99992 * 23 13 12 25 25 F 1.39894 * 109.47279 * 179.97438 * 23 13 12 26 26 F 1.39900 * 109.47129 * 300.00241 * 23 13 12 27 27 C 1.54951 * 105.13427 * 335.56875 * 8 7 5 28 28 C 1.54384 * 109.82643 * 65.00672 * 5 3 2 29 29 H 1.08994 * 110.85088 * 22.67693 * 28 5 3 30 30 C 1.53001 * 110.84848 * 259.06002 * 28 5 3 31 31 H 1.09000 * 109.47233 * 299.99246 * 1 2 3 32 32 H 1.09000 * 109.47443 * 59.99677 * 1 2 3 33 33 H 1.09002 * 109.46959 * 179.97438 * 1 2 3 34 34 H 0.96997 * 119.99916 * 359.97438 * 12 10 8 35 35 H 0.97003 * 120.00052 * 180.02562 * 18 17 15 36 36 H 1.09001 * 111.12671 * 278.52829 * 27 8 7 37 37 H 1.09002 * 111.11830 * 154.36724 * 27 8 7 38 38 H 1.09004 * 109.47245 * 61.45255 * 30 28 5 39 39 H 1.08995 * 109.47565 * 181.45819 * 30 28 5 40 40 H 1.09006 * 109.47210 * 301.45460 * 30 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9652 0.7201 0.8497 7 8 3.9810 2.6440 0.0742 8 6 4.7228 2.9960 -1.1045 9 1 4.0637 3.4494 -1.8449 10 6 5.8448 3.9399 -0.7564 11 8 6.0169 4.2789 0.3953 12 7 6.6570 4.4075 -1.7250 13 6 7.7475 5.3256 -1.3867 14 1 7.4328 5.9793 -0.5733 15 6 8.0962 6.1576 -2.5938 16 1 7.5597 6.0165 -3.5203 17 6 9.1011 7.0984 -2.5156 18 7 9.7549 7.2700 -1.3874 19 14 9.5330 8.1304 -4.0116 20 1 8.7134 9.3686 -4.0122 21 1 10.9731 8.4900 -3.9657 22 1 9.2561 7.3527 -5.2459 23 6 8.9738 4.5217 -0.9497 24 9 9.3775 3.6826 -1.9937 25 9 10.0153 5.3983 -0.6272 26 9 8.6500 3.7493 0.1709 27 6 5.2922 1.6577 -1.6389 28 6 4.1218 0.6894 -1.3154 29 1 3.3672 0.7167 -2.1013 30 6 4.6371 -0.7355 -1.1026 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 6.5195 4.1363 -2.6461 35 1 10.4616 7.9321 -1.3322 36 1 6.1971 1.3734 -1.1019 37 1 5.4743 1.7091 -2.7123 38 1 3.8155 -1.3743 -0.7785 39 1 5.0470 -1.1171 -2.0377 40 1 5.4159 -0.7302 -0.3400 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928800082.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:29 Heat of formation + Delta-G solvation = -300.354037 kcal Electronic energy + Delta-G solvation = -31251.076142 eV Core-core repulsion = 26231.159442 eV Total energy + Delta-G solvation = -5019.916700 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.117 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.38606 -46.04165 -45.64519 -41.11504 -39.79243 -38.21592 -36.56235 -34.74010 -33.87722 -32.67722 -31.03869 -28.75990 -27.97184 -26.81035 -24.70208 -24.22595 -21.68566 -21.55056 -20.79866 -19.80512 -18.33653 -17.67170 -17.13551 -16.95729 -16.77340 -16.63414 -16.57011 -16.37152 -15.54238 -15.20926 -14.85571 -14.56878 -14.35318 -13.97871 -13.59208 -13.44590 -13.16987 -13.02479 -12.94229 -12.63413 -12.54203 -12.46382 -12.42681 -12.31337 -12.09986 -11.98620 -11.84491 -11.65284 -11.41550 -11.21929 -11.14617 -11.04396 -10.87687 -10.83677 -10.73880 -10.42982 -9.91392 -9.71046 -9.09257 -8.75423 -8.33168 -6.26589 -4.51096 1.96179 2.23332 3.04385 3.16932 3.22630 3.25169 3.30722 3.86640 4.09120 4.19899 4.36090 4.48686 4.57010 4.72479 4.81150 4.82913 4.89969 4.90345 4.99735 5.07455 5.22947 5.25738 5.35538 5.45996 5.59372 5.64624 5.80093 5.83330 5.84860 5.95689 6.09069 6.17240 6.55312 6.89500 7.10435 7.42639 7.55572 7.59741 8.23212 8.46289 8.80378 9.16918 10.65030 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021726 B = 0.003037 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.481145 B = 9218.080631 C = 9577.415684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.358 6.358 3 C 0.447 3.553 4 O -0.486 6.486 5 C 0.093 3.907 6 H 0.125 0.875 7 O -0.316 6.316 8 C 0.061 3.939 9 H 0.100 0.900 10 C 0.507 3.493 11 O -0.513 6.513 12 N -0.707 5.707 13 C 0.246 3.754 14 H 0.086 0.914 15 C -0.553 4.553 16 H 0.078 0.922 17 C 0.065 3.935 18 N -0.839 5.839 19 Si 0.916 3.084 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.270 1.270 23 C 0.417 3.583 24 F -0.209 7.209 25 F -0.136 7.136 26 F -0.217 7.217 27 C -0.142 4.142 28 C -0.109 4.109 29 H 0.093 0.907 30 C -0.143 4.143 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.102 0.898 34 H 0.399 0.601 35 H 0.269 0.731 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.776 -15.858 -2.541 19.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.288 3.712 4 O -0.372 6.372 5 C 0.033 3.967 6 H 0.142 0.858 7 O -0.233 6.233 8 C 0.000 4.000 9 H 0.117 0.883 10 C 0.291 3.709 11 O -0.387 6.387 12 N -0.359 5.359 13 C 0.141 3.859 14 H 0.104 0.896 15 C -0.590 4.590 16 H 0.096 0.904 17 C -0.144 4.144 18 N -0.472 5.472 19 Si 0.742 3.258 20 H -0.202 1.202 21 H -0.208 1.208 22 H -0.195 1.195 23 C 0.361 3.639 24 F -0.191 7.191 25 F -0.117 7.117 26 F -0.199 7.199 27 C -0.180 4.180 28 C -0.128 4.128 29 H 0.111 0.889 30 C -0.200 4.200 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.120 0.880 34 H 0.232 0.768 35 H 0.079 0.921 36 H 0.113 0.887 37 H 0.119 0.881 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.741 -15.041 -1.385 19.131 hybrid contribution 0.173 0.254 -1.198 1.237 sum -11.569 -14.787 -2.583 18.951 Atomic orbital electron populations 1.23275 0.76294 1.03650 1.02674 1.86489 1.23401 1.33229 1.84360 1.24262 0.92322 0.81663 0.73000 1.90701 1.66660 1.36314 1.43483 1.22412 0.86572 0.86061 1.01668 0.85796 1.88685 1.71099 1.24180 1.39370 1.22985 0.92989 0.95945 0.88075 0.88254 1.20136 0.82803 0.81687 0.86292 1.90741 1.71059 1.57471 1.19400 1.45960 1.31530 1.48283 1.10109 1.19748 0.79362 0.86064 1.00750 0.89632 1.20864 1.21426 1.20337 0.96374 0.90371 1.25088 0.95040 0.96986 0.97297 1.70399 1.21212 1.30674 1.24900 0.86198 0.77806 0.80080 0.81675 1.20168 1.20788 1.19501 1.23130 0.89445 0.78107 0.73236 1.92985 1.92413 1.74081 1.59638 1.93408 1.60074 1.65748 1.92483 1.93073 1.93049 1.78208 1.55615 1.23418 0.98844 0.92063 1.03639 1.22646 0.97867 0.97044 0.95233 0.88911 1.21760 1.01740 0.93613 1.02909 0.91837 0.91902 0.87997 0.76753 0.92051 0.88654 0.88098 0.91309 0.91354 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.58 10.56 -39.26 -0.41 -4.00 16 3 C 0.45 5.70 7.14 36.01 0.26 5.96 16 4 O -0.49 -7.95 16.27 -25.40 -0.41 -8.37 16 5 C 0.09 1.13 3.67 -27.15 -0.10 1.03 16 6 H 0.12 1.30 7.81 -51.93 -0.41 0.90 16 7 O -0.32 -5.29 9.82 -64.44 -0.63 -5.92 16 8 C 0.06 0.91 3.86 -26.85 -0.10 0.81 16 9 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 10 C 0.51 10.01 6.72 -10.99 -0.07 9.94 16 11 O -0.51 -12.51 15.12 -13.75 -0.21 -12.72 16 12 N -0.71 -13.91 4.97 -54.93 -0.27 -14.18 16 13 C 0.25 6.00 2.21 -69.08 -0.15 5.85 16 14 H 0.09 2.37 7.58 -51.93 -0.39 1.98 16 15 C -0.55 -13.80 8.47 -34.44 -0.29 -14.09 16 16 H 0.08 1.82 7.74 -52.49 -0.41 1.42 16 17 C 0.06 1.66 5.20 -17.82 -0.09 1.57 16 18 N -0.84 -22.79 9.50 55.43 0.53 -22.26 16 19 Si 0.92 19.80 29.54 -169.99 -5.02 14.78 16 20 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 C 0.42 10.47 2.81 37.16 0.10 10.57 16 24 F -0.21 -4.96 16.94 2.25 0.04 -4.92 16 25 F -0.14 -3.72 12.91 2.25 0.03 -3.69 16 26 F -0.22 -5.43 15.68 2.25 0.04 -5.39 16 27 C -0.14 -1.55 6.01 -24.48 -0.15 -1.70 16 28 C -0.11 -1.00 3.11 -88.67 -0.28 -1.28 16 29 H 0.09 0.76 7.84 -51.93 -0.41 0.35 16 30 C -0.14 -1.01 9.14 37.16 0.34 -0.67 16 31 H 0.06 0.49 8.13 -51.93 -0.42 0.06 16 32 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 33 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.40 6.49 8.54 -40.82 -0.35 6.14 16 35 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 36 H 0.09 1.14 7.93 -51.93 -0.41 0.73 16 37 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 LS Contribution 352.37 15.07 5.31 5.31 Total: -1.00 -33.62 352.37 -5.38 -39.00 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -4.89 Total: 3.05 kcal Atomic # 6 Polarization: 18.77 SS G_CDS: 0.53 Total: 19.30 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.25 Total: -36.44 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -1.67 Total: -31.00 kcal Atomic # 9 Polarization: -14.11 SS G_CDS: 0.10 Total: -14.00 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.62 -5.38 -39.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928800082.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -261.351 kcal (2) G-P(sol) polarization free energy of solvation -33.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -294.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -300.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds