Wall clock time and date at job start Tue Mar 31 2020 22:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35519 * 117.00050 * 2 1 4 4 N 1.32406 * 119.53032 * 0.02562 * 3 2 1 5 5 C 1.31656 * 121.81048 * 179.70048 * 4 3 2 6 6 C 1.39545 * 120.64999 * 0.54469 * 5 4 3 7 7 C 1.47614 * 120.49429 * 179.74700 * 6 5 4 8 8 O 1.21586 * 119.99887 * 187.62664 * 7 6 5 9 9 N 1.34773 * 120.00060 * 7.63304 * 7 6 5 10 10 C 1.47295 * 125.79338 * 355.01124 * 9 7 6 11 11 C 1.54322 * 107.30660 * 178.92472 * 10 9 7 12 12 H 1.09005 * 110.72045 * 96.18086 * 11 10 9 13 13 C 1.52995 * 110.71883 * 219.45220 * 11 10 9 14 14 C 1.55154 * 102.94382 * 337.81622 * 11 10 9 15 15 H 1.09000 * 111.03685 * 277.41464 * 14 11 10 16 16 N 1.46497 * 111.00602 * 153.57347 * 14 11 10 17 17 C 1.36938 * 120.00184 * 161.34627 * 16 14 11 18 18 H 1.07998 * 119.99969 * 0.02562 * 17 16 14 19 19 C 1.38810 * 120.00314 * 180.02562 * 17 16 14 20 20 N 1.31627 * 119.99892 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00255 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47117 * 59.99623 * 21 19 17 23 23 H 1.48500 * 109.46999 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46989 * 299.99967 * 21 19 17 25 25 C 1.47426 * 125.65097 * 175.00619 * 9 7 6 26 26 C 1.40250 * 119.01117 * 359.46981 * 6 5 4 27 27 C 1.38093 * 118.34599 * 0.25635 * 26 6 5 28 28 Cl 1.73595 * 120.37670 * 180.02562 * 27 26 6 29 29 H 1.09004 * 109.47506 * 299.99715 * 1 2 3 30 30 H 1.08995 * 109.47339 * 59.99779 * 1 2 3 31 31 H 1.09002 * 109.47309 * 180.02562 * 1 2 3 32 32 H 1.08001 * 119.67438 * 180.27105 * 5 4 3 33 33 H 1.09000 * 109.85349 * 59.49865 * 10 9 7 34 34 H 1.09004 * 109.99891 * 298.43236 * 10 9 7 35 35 H 1.08999 * 109.47064 * 173.52148 * 13 11 10 36 36 H 1.09003 * 109.47652 * 293.52348 * 13 11 10 37 37 H 1.09007 * 109.47391 * 53.52705 * 13 11 10 38 38 H 0.96999 * 120.00143 * 341.35695 * 16 14 11 39 39 H 0.96999 * 119.99835 * 179.97438 * 20 19 17 40 40 H 1.09001 * 110.36246 * 85.26566 * 25 9 7 41 41 H 1.08995 * 110.36672 * 323.05293 * 25 9 7 42 42 H 1.08001 * 120.82658 * 180.27128 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 7 1.3140 2.3120 0.0005 5 6 1.8646 3.5079 0.0064 6 6 3.2526 3.6521 0.0009 7 6 3.8662 4.9946 0.0019 8 8 5.0675 5.1141 -0.1426 9 7 3.0949 6.0880 0.1631 10 6 1.6242 6.1004 0.2445 11 6 1.1884 7.5656 0.4559 12 1 0.9199 8.0289 -0.4936 13 6 0.0262 7.6470 1.4474 14 6 2.4621 8.2251 1.0477 15 1 2.5315 8.0485 2.1210 16 7 2.4971 9.6593 0.7510 17 6 3.3045 10.4901 1.4811 18 1 3.9158 10.0879 2.2755 19 6 3.3373 11.8491 1.2004 20 7 2.5919 12.3393 0.2326 21 14 4.4392 12.9822 2.1960 22 1 5.8529 12.5516 2.0503 23 1 4.2929 14.3748 1.7015 24 1 4.0481 12.9209 3.6273 25 6 3.5833 7.4734 0.2877 26 6 4.0559 2.5024 0.0004 27 6 3.4352 1.2689 -0.0001 28 17 4.3784 -0.1885 -0.0001 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.2358 4.3860 0.0110 33 1 1.2949 5.4906 1.0858 34 1 1.1963 5.7162 -0.6815 35 1 -0.1893 8.6922 1.6697 36 1 -0.8566 7.1787 1.0120 37 1 0.2962 7.1283 2.3673 38 1 1.9483 10.0205 0.0374 39 1 2.6145 13.2890 0.0367 40 1 3.7335 7.9127 -0.6985 41 1 4.5114 7.4985 0.8587 42 1 5.1331 2.5800 0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939785908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:48 Heat of formation + Delta-G solvation = -0.820781 kcal Electronic energy + Delta-G solvation = -26815.831482 eV Core-core repulsion = 22823.762175 eV Total energy + Delta-G solvation = -3992.069307 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.34976 -39.95780 -38.27077 -37.57054 -36.91945 -34.36263 -32.77923 -32.58441 -31.50981 -30.62364 -28.29448 -27.21959 -26.75388 -24.64867 -23.99694 -23.40738 -21.69213 -20.28854 -19.89653 -18.78435 -18.06050 -17.50825 -17.04161 -16.59628 -16.16033 -15.57709 -15.20003 -14.81302 -14.61260 -14.52747 -14.15932 -13.89632 -13.69445 -13.64532 -13.10231 -12.99320 -12.83701 -12.74923 -12.37362 -12.33055 -11.89535 -11.75779 -11.58190 -11.45557 -11.17860 -11.10798 -10.84354 -10.72794 -10.33208 -10.30715 -10.13091 -10.00486 -9.85600 -9.73112 -9.05699 -8.87937 -8.51254 -7.13122 -5.88158 -3.19178 0.29254 0.60190 1.67143 2.50607 2.64327 2.97125 3.39617 3.42909 3.44720 3.45296 3.78987 4.18715 4.36992 4.48747 4.52703 4.63945 4.73475 4.89102 4.92314 4.93208 5.02134 5.18001 5.24082 5.34517 5.38392 5.49968 5.58387 5.71101 5.72493 5.79434 5.91261 6.07418 6.16958 6.28674 6.36271 6.49476 6.50042 6.61929 6.81427 7.19732 7.56219 7.61512 8.14105 8.29291 9.41543 9.93423 10.28244 11.33574 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.021824 B = 0.002448 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.693054 B =11435.906626 C =12442.124022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.293 6.293 3 C 0.349 3.651 4 N -0.526 5.526 5 C 0.143 3.857 6 C -0.206 4.206 7 C 0.577 3.423 8 O -0.536 6.536 9 N -0.606 5.606 10 C 0.090 3.910 11 C -0.113 4.113 12 H 0.089 0.911 13 C -0.137 4.137 14 C 0.177 3.823 15 H 0.067 0.933 16 N -0.709 5.709 17 C -0.250 4.250 18 H 0.072 0.928 19 C -0.007 4.007 20 N -0.930 5.930 21 Si 0.908 3.092 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.285 1.285 25 C 0.082 3.918 26 C 0.023 3.977 27 C -0.119 4.119 28 Cl -0.038 7.038 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.204 0.796 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.388 0.612 39 H 0.258 0.742 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.691 -24.053 -0.766 24.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.199 6.199 3 C 0.169 3.831 4 N -0.250 5.250 5 C -0.013 4.013 6 C -0.212 4.212 7 C 0.365 3.635 8 O -0.414 6.414 9 N -0.338 5.338 10 C -0.033 4.033 11 C -0.133 4.133 12 H 0.108 0.892 13 C -0.194 4.194 14 C 0.065 3.935 15 H 0.084 0.916 16 N -0.348 5.348 17 C -0.380 4.380 18 H 0.090 0.910 19 C -0.203 4.203 20 N -0.577 5.577 21 Si 0.739 3.261 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.211 1.211 25 C -0.043 4.043 26 C -0.003 4.003 27 C -0.149 4.149 28 Cl -0.010 7.010 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.118 0.882 32 H 0.219 0.781 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.222 0.778 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -6.623 -24.411 -0.739 25.305 hybrid contribution 1.181 0.739 0.166 1.403 sum -5.441 -23.673 -0.573 24.297 Atomic orbital electron populations 1.22995 0.76362 1.03488 1.02980 1.86289 1.23542 1.23563 1.86479 1.19810 0.87758 0.85811 0.89735 1.67670 1.38974 0.98232 1.20139 1.24597 0.92984 0.95287 0.88414 1.20836 0.94719 0.94640 1.10963 1.17384 0.85961 0.82606 0.77524 1.90806 1.14048 1.86227 1.50350 1.48428 1.07005 1.07734 1.70666 1.22665 0.80862 0.99098 1.00695 1.22515 0.97117 0.92792 1.00831 0.89237 1.21702 0.96429 1.03270 0.98038 1.21386 0.89795 0.85494 0.96845 0.91562 1.42263 1.51573 0.99855 1.41156 1.19186 1.17959 0.88873 1.12013 0.90993 1.24759 0.99898 0.96960 0.98714 1.69646 1.42715 1.13107 1.32207 0.86258 0.80394 0.79997 0.79467 1.21078 1.21635 1.21124 1.23538 1.00719 0.78024 1.02006 1.21499 1.02006 0.88097 0.88679 1.20706 0.89433 0.90077 1.14697 1.98384 1.71304 1.34191 1.97095 0.91767 0.91787 0.88157 0.78082 0.90451 0.90653 0.91051 0.92987 0.92755 0.77795 0.93260 0.91028 0.90768 0.81833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.37 101.05 1.05 1.29 16 2 O -0.29 -2.90 9.93 -18.25 -0.18 -3.08 16 3 C 0.35 3.86 7.49 -16.94 -0.13 3.74 16 4 N -0.53 -5.69 9.18 -12.94 -0.12 -5.81 16 5 C 0.14 1.52 9.80 -17.14 -0.17 1.35 16 6 C -0.21 -2.56 5.89 -104.83 -0.62 -3.17 16 7 C 0.58 8.87 7.81 -12.44 -0.10 8.77 16 8 O -0.54 -10.11 16.74 5.29 0.09 -10.02 16 9 N -0.61 -8.85 3.34 -173.97 -0.58 -9.43 16 10 C 0.09 1.00 4.49 -2.92 -0.01 0.98 16 11 C -0.11 -1.50 3.17 -88.79 -0.28 -1.78 16 12 H 0.09 1.23 8.00 -51.93 -0.42 0.81 16 13 C -0.14 -1.61 9.16 37.16 0.34 -1.27 16 14 C 0.18 3.13 3.13 -65.79 -0.21 2.92 16 15 H 0.07 1.20 8.04 -51.93 -0.42 0.79 16 16 N -0.71 -16.12 5.28 -51.35 -0.27 -16.39 16 17 C -0.25 -6.50 9.98 -15.06 -0.15 -6.65 16 18 H 0.07 1.84 7.83 -52.49 -0.41 1.42 16 19 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 20 N -0.93 -26.70 13.06 55.49 0.72 -25.97 16 21 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.08 1.44 6.57 -2.53 -0.02 1.43 16 26 C 0.02 0.27 9.50 -38.88 -0.37 -0.09 16 27 C -0.12 -1.33 6.35 -39.27 -0.25 -1.58 16 28 Cl -0.04 -0.39 28.52 -51.86 -1.48 -1.87 16 29 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 30 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 31 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.20 1.77 2.78 -55.71 -0.15 1.62 16 33 H 0.08 0.72 6.31 -51.93 -0.33 0.39 16 34 H 0.08 0.68 6.82 -51.93 -0.35 0.33 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.05 0.59 8.06 -51.93 -0.42 0.18 16 38 H 0.39 9.34 7.71 -40.82 -0.31 9.03 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.07 1.43 8.09 -51.93 -0.42 1.01 16 42 H 0.16 1.85 7.75 -52.49 -0.41 1.44 16 LS Contribution 364.58 15.07 5.49 5.49 Total: -1.00 -30.88 364.58 -7.66 -38.54 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -5.31 Total: 6.24 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -1.00 Total: 5.67 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: -0.25 Total: -57.60 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -0.09 Total: -13.10 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.48 Total: -1.87 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.88 -7.66 -38.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939785908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.717 kcal (2) G-P(sol) polarization free energy of solvation -30.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds