Wall clock time and date at job start Tue Mar 31 2020 22:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35519 * 117.00216 * 2 1 4 4 N 1.32409 * 119.52903 * 359.73119 * 3 2 1 5 5 C 1.31651 * 121.81433 * 179.71087 * 4 3 2 6 6 C 1.39556 * 120.64673 * 0.55534 * 5 4 3 7 7 C 1.47612 * 120.49152 * 179.74711 * 6 5 4 8 8 O 1.21582 * 119.99975 * 179.97438 * 7 6 5 9 9 N 1.34776 * 120.00420 * 359.97438 * 7 6 5 10 10 C 1.46494 * 120.00295 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.47281 * 325.00292 * 10 9 7 12 12 C 1.52999 * 109.47068 * 85.00000 * 10 9 7 13 13 C 1.52999 * 109.47366 * 205.00127 * 10 9 7 14 14 C 1.53948 * 113.74441 * 162.20118 * 13 10 9 15 15 N 1.47817 * 86.03432 * 222.08483 * 14 13 10 16 16 C 1.36940 * 134.45190 * 204.64450 * 15 14 13 17 17 H 1.08002 * 119.99651 * 182.58257 * 16 15 14 18 18 C 1.38811 * 120.00014 * 2.57931 * 16 15 14 19 19 N 1.31610 * 120.00023 * 353.41792 * 18 16 15 20 20 Si 1.86800 * 119.99618 * 173.41294 * 18 16 15 21 21 H 1.48507 * 109.46764 * 94.97487 * 20 18 16 22 22 H 1.48494 * 109.47158 * 214.97109 * 20 18 16 23 23 H 1.48494 * 109.47370 * 334.97815 * 20 18 16 24 24 C 1.47581 * 91.04975 * 24.54641 * 15 14 13 25 25 C 1.40245 * 119.01048 * 359.73350 * 6 5 4 26 26 C 1.38085 * 118.34790 * 359.97438 * 25 6 5 27 27 Cl 1.73601 * 120.37826 * 180.02562 * 26 25 6 28 28 H 1.08997 * 109.47054 * 300.00009 * 1 2 3 29 29 H 1.09001 * 109.46818 * 60.00115 * 1 2 3 30 30 H 1.09005 * 109.46952 * 179.97438 * 1 2 3 31 31 H 1.08000 * 119.67838 * 180.26794 * 5 4 3 32 32 H 0.96999 * 119.99827 * 0.02562 * 9 7 6 33 33 H 1.09007 * 109.47238 * 184.49054 * 12 10 9 34 34 H 1.08998 * 109.47239 * 304.48594 * 12 10 9 35 35 H 1.08998 * 109.47289 * 64.48940 * 12 10 9 36 36 H 1.09000 * 112.94217 * 293.79173 * 13 10 9 37 37 H 1.09005 * 113.76662 * 336.34561 * 14 13 10 38 38 H 1.08995 * 113.77221 * 107.74673 * 14 13 10 39 39 H 0.97005 * 119.99754 * 179.97438 * 19 18 16 40 40 H 1.09000 * 113.76453 * 221.15323 * 24 15 14 41 41 H 1.08995 * 113.87294 * 89.77522 * 24 15 14 42 42 H 1.08002 * 120.82866 * 180.02562 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 7 1.3141 2.3120 -0.0054 5 6 1.8646 3.5079 0.0000 6 6 3.2527 3.6521 0.0001 7 6 3.8662 4.9947 0.0005 8 8 5.0766 5.1099 0.0011 9 7 3.0848 6.0928 0.0003 10 6 3.6937 7.4252 0.0014 11 1 4.6099 7.4055 0.5915 12 6 4.0212 7.8373 -1.4352 13 6 2.7162 8.4322 0.6106 14 6 3.3801 9.7465 1.0600 15 7 2.5241 9.6484 2.2611 16 6 2.0258 10.5533 3.1601 17 1 1.4392 10.2125 4.0004 18 6 2.2748 11.9084 2.9913 19 7 3.0946 12.3141 2.0450 20 14 1.4461 13.1563 4.1074 21 1 2.3529 13.4913 5.2347 22 1 1.1422 14.3870 3.3341 23 1 0.1845 12.5826 4.6407 24 6 2.4203 8.1850 2.1009 25 6 4.0559 2.5025 0.0001 26 6 3.4353 1.2690 0.0005 27 17 4.3785 -0.1884 0.0011 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.2358 4.3860 -0.0003 32 1 2.1192 6.0009 0.0003 33 1 4.5461 8.7927 -1.4285 34 1 4.6539 7.0785 -1.8957 35 1 3.0971 7.9345 -2.0050 36 1 1.8224 8.5772 0.0039 37 1 4.4453 9.6510 1.2707 38 1 3.1463 10.5978 0.4208 39 1 3.2682 13.2611 1.9269 40 1 1.4216 7.7921 2.2912 41 1 3.2019 7.6282 2.6176 42 1 5.1332 2.5799 0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970915250.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:37 Heat of formation + Delta-G solvation = 15.105591 kcal Electronic energy + Delta-G solvation = -26335.814357 eV Core-core repulsion = 22344.435669 eV Total energy + Delta-G solvation = -3991.378688 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -41.33646 -39.87430 -38.44858 -37.81381 -36.97375 -34.96376 -32.87287 -32.38279 -31.62420 -30.06327 -27.81957 -27.50026 -25.11171 -24.57911 -24.11366 -23.64231 -21.56520 -20.60075 -19.41503 -18.99379 -17.88376 -17.75026 -16.79076 -16.63892 -15.94957 -15.78336 -15.10190 -14.85908 -14.74951 -14.67557 -14.17543 -13.91849 -13.87347 -13.59965 -13.42617 -13.17303 -12.45082 -12.37187 -12.34691 -12.12426 -11.67511 -11.61406 -11.51333 -11.41267 -11.28028 -10.93439 -10.71781 -10.58060 -10.39953 -10.20372 -10.07345 -9.85252 -9.72886 -9.47232 -9.06336 -8.85682 -8.75391 -6.90440 -5.79221 -3.10116 0.19749 0.52822 1.61669 2.44360 2.56691 3.05500 3.37939 3.38462 3.43140 3.45258 3.67657 4.19061 4.35557 4.43599 4.54327 4.61601 4.84884 4.89455 5.02547 5.11319 5.16322 5.23058 5.36618 5.44618 5.50739 5.60263 5.66506 5.78014 5.94663 6.02916 6.22493 6.32237 6.40831 6.50897 6.54870 6.59441 6.74152 7.10084 7.19631 7.34299 7.46698 7.53660 7.96328 8.13541 9.02927 9.69463 10.58227 11.38476 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.020075 B = 0.002188 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.403521 B =12792.640515 C =13516.875723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.292 6.292 3 C 0.352 3.648 4 N -0.527 5.527 5 C 0.183 3.817 6 C -0.209 4.209 7 C 0.567 3.433 8 O -0.534 6.534 9 N -0.711 5.711 10 C 0.151 3.849 11 H 0.090 0.910 12 C -0.158 4.158 13 C -0.148 4.148 14 C 0.176 3.824 15 N -0.612 5.612 16 C -0.224 4.224 17 H 0.079 0.921 18 C -0.007 4.007 19 N -0.921 5.921 20 Si 0.911 3.089 21 H -0.289 1.289 22 H -0.289 1.289 23 H -0.280 1.280 24 C 0.125 3.875 25 C 0.025 3.975 26 C -0.119 4.119 27 Cl -0.037 7.037 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.173 0.827 32 H 0.397 0.603 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.090 0.910 37 H 0.029 0.971 38 H 0.074 0.926 39 H 0.254 0.746 40 H 0.041 0.959 41 H 0.032 0.968 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.280 -24.356 -8.534 26.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.198 6.198 3 C 0.173 3.827 4 N -0.251 5.251 5 C 0.025 3.975 6 C -0.215 4.215 7 C 0.352 3.648 8 O -0.412 6.412 9 N -0.361 5.361 10 C 0.047 3.953 11 H 0.108 0.892 12 C -0.216 4.216 13 C -0.168 4.168 14 C 0.050 3.950 15 N -0.338 5.338 16 C -0.352 4.352 17 H 0.097 0.903 18 C -0.204 4.204 19 N -0.568 5.568 20 Si 0.741 3.259 21 H -0.217 1.217 22 H -0.216 1.216 23 H -0.206 1.206 24 C -0.001 4.001 25 C -0.001 4.001 26 C -0.149 4.149 27 Cl -0.008 7.008 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.119 0.881 31 H 0.190 0.810 32 H 0.232 0.768 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.047 0.953 38 H 0.092 0.908 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.050 0.950 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -3.204 -24.424 -8.397 26.025 hybrid contribution -0.135 0.731 0.724 1.038 sum -3.339 -23.693 -7.673 25.127 Atomic orbital electron populations 1.23012 0.76235 1.03590 1.03021 1.86299 1.23636 1.23455 1.86374 1.19729 0.87726 0.85669 0.89622 1.67515 1.39102 0.98270 1.20190 1.22819 0.91774 0.94096 0.88761 1.20898 0.94533 0.94945 1.11124 1.17712 0.86770 0.83455 0.76855 1.90805 1.13616 1.86784 1.49974 1.46048 1.09877 1.06079 1.74143 1.21185 0.97473 0.79647 0.97029 0.89151 1.22114 1.01571 1.01977 0.95968 1.23866 0.98946 0.97529 0.96428 1.22233 0.92815 0.92184 0.87744 1.46038 1.56633 1.00342 1.30802 1.19022 1.26035 0.86311 1.03784 0.90317 1.24777 0.99717 0.96763 0.99133 1.69818 1.37983 1.14377 1.34586 0.86124 0.79023 0.81170 0.79583 1.21681 1.21571 1.20588 1.22538 0.97971 0.87790 0.91843 1.21510 1.02111 0.88075 0.88447 1.20730 0.89431 0.90228 1.14464 1.98391 1.71226 1.34106 1.97058 0.91698 0.91756 0.88082 0.81018 0.76833 0.90977 0.92749 0.92632 0.89212 0.95336 0.90803 0.93615 0.94097 0.95008 0.81710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.37 101.05 1.05 1.27 16 2 O -0.29 -2.69 9.93 -18.25 -0.18 -2.87 16 3 C 0.35 3.56 7.49 -16.94 -0.13 3.43 16 4 N -0.53 -5.10 9.18 -12.94 -0.12 -5.22 16 5 C 0.18 1.61 10.71 -17.14 -0.18 1.43 16 6 C -0.21 -2.17 5.89 -104.83 -0.62 -2.79 16 7 C 0.57 7.19 7.74 -12.44 -0.10 7.09 16 8 O -0.53 -8.67 16.08 5.29 0.09 -8.58 16 9 N -0.71 -8.25 4.90 -54.83 -0.27 -8.52 16 10 C 0.15 2.15 2.28 -67.93 -0.16 1.99 16 11 H 0.09 1.51 7.49 -51.93 -0.39 1.12 16 12 C -0.16 -2.06 9.43 37.16 0.35 -1.71 16 13 C -0.15 -2.48 3.35 -89.70 -0.30 -2.78 16 14 C 0.18 3.95 7.03 -2.83 -0.02 3.93 16 15 N -0.61 -15.34 3.70 -177.70 -0.66 -16.00 16 16 C -0.22 -6.23 10.69 -15.06 -0.16 -6.39 16 17 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 18 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 19 N -0.92 -27.00 11.43 55.49 0.63 -26.37 16 20 Si 0.91 21.95 29.56 -169.99 -5.02 16.93 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C 0.12 2.41 8.38 -2.97 -0.02 2.38 16 25 C 0.02 0.25 9.50 -38.88 -0.37 -0.12 16 26 C -0.12 -1.20 6.35 -39.27 -0.25 -1.45 16 27 Cl -0.04 -0.34 28.53 -51.86 -1.48 -1.82 16 28 H 0.06 0.40 8.10 -51.93 -0.42 -0.02 16 29 H 0.06 0.38 8.10 -51.93 -0.42 -0.04 16 30 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.17 1.03 6.41 -52.49 -0.34 0.70 16 32 H 0.40 3.52 6.65 -40.82 -0.27 3.25 16 33 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 37 H 0.03 0.67 8.04 -51.93 -0.42 0.25 16 38 H 0.07 1.83 7.20 -51.93 -0.37 1.45 16 39 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.03 0.63 8.10 -51.93 -0.42 0.21 16 42 H 0.17 1.63 7.73 -52.49 -0.41 1.22 16 LS Contribution 372.15 15.07 5.61 5.61 Total: -1.00 -33.23 372.15 -7.94 -41.17 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -5.54 Total: -0.32 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: -1.00 Total: 6.00 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: -0.41 Total: -56.11 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -0.10 Total: -11.46 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.48 Total: -1.82 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.23 -7.94 -41.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970915250.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.276 kcal (2) G-P(sol) polarization free energy of solvation -33.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds