Wall clock time and date at job start Tue Mar 31 2020 23:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35522 * 117.00179 * 2 1 4 4 N 1.32399 * 119.52962 * 0.02562 * 3 2 1 5 5 C 1.31655 * 121.81526 * 179.70347 * 4 3 2 6 6 C 1.39546 * 120.64617 * 0.54293 * 5 4 3 7 7 C 1.47620 * 120.49385 * 179.74738 * 6 5 4 8 8 O 1.21578 * 119.99708 * 172.97939 * 7 6 5 9 9 N 1.34771 * 119.99910 * 352.98228 * 7 6 5 10 10 C 1.47424 * 125.64719 * 185.13582 * 9 7 6 11 11 C 1.55123 * 104.94421 * 204.03396 * 10 9 7 12 12 C 1.55157 * 101.48319 * 323.22300 * 11 10 9 13 13 H 1.08998 * 110.71669 * 276.82602 * 12 11 10 14 14 N 1.46503 * 110.71712 * 153.73375 * 12 11 10 15 15 C 1.46499 * 119.99977 * 302.43737 * 14 12 11 16 16 C 1.36939 * 120.00216 * 122.16860 * 14 12 11 17 17 H 1.08007 * 119.99484 * 317.37884 * 16 14 12 18 18 C 1.38807 * 120.00331 * 137.38247 * 16 14 12 19 19 N 1.31622 * 119.99626 * 178.16956 * 18 16 14 20 20 Si 1.86795 * 119.99918 * 358.17075 * 18 16 14 21 21 H 1.48504 * 109.47146 * 92.97627 * 20 18 16 22 22 H 1.48502 * 109.46881 * 212.97041 * 20 18 16 23 23 H 1.48497 * 109.47679 * 332.97308 * 20 18 16 24 24 C 1.47018 * 125.64953 * 5.16908 * 9 7 6 25 25 C 1.40249 * 119.01217 * 359.47510 * 6 5 4 26 26 C 1.38083 * 118.34697 * 0.25088 * 25 6 5 27 27 Cl 1.73601 * 120.38036 * 179.97438 * 26 25 6 28 28 H 1.08999 * 109.47094 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47352 * 300.00251 * 1 2 3 30 30 H 1.09001 * 109.47299 * 60.00075 * 1 2 3 31 31 H 1.07999 * 119.68202 * 180.28942 * 5 4 3 32 32 H 1.09003 * 110.36961 * 322.99740 * 10 9 7 33 33 H 1.08999 * 110.37199 * 85.21380 * 10 9 7 34 34 H 1.08993 * 111.16263 * 205.12903 * 11 10 9 35 35 H 1.09005 * 110.93465 * 81.21326 * 11 10 9 36 36 H 1.08999 * 109.47037 * 84.69445 * 15 14 12 37 37 H 1.09005 * 109.47313 * 204.69785 * 15 14 12 38 38 H 1.08998 * 109.47220 * 324.68944 * 15 14 12 39 39 H 0.96998 * 119.99351 * 179.97438 * 19 18 16 40 40 H 1.08999 * 109.88358 * 59.49394 * 24 9 7 41 41 H 1.08995 * 109.88801 * 298.32803 * 24 9 7 42 42 H 1.08004 * 120.82687 * 180.27314 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 7 1.3141 2.3120 0.0005 5 6 1.8646 3.5079 0.0063 6 6 3.2525 3.6521 0.0008 7 6 3.8662 4.9947 0.0018 8 8 5.0698 5.1128 0.1257 9 7 3.0921 6.0895 -0.1347 10 6 3.5785 7.4757 -0.2575 11 6 2.3984 8.3581 0.2274 12 6 1.1787 7.5709 -0.3201 13 1 0.9938 7.8236 -1.3642 14 7 -0.0125 7.8297 0.4926 15 6 0.0056 7.5459 1.9298 16 6 -1.1409 8.3419 -0.0900 17 1 -1.0604 9.1396 -0.8137 18 6 -2.3882 7.8362 0.2496 19 7 -3.4751 8.3528 -0.2833 20 14 -2.5239 6.4224 1.4630 21 1 -2.7154 6.9626 2.8330 22 1 -3.6840 5.5691 1.1008 23 1 -1.2805 5.6118 1.4198 24 6 1.6228 6.0991 -0.1849 25 6 4.0559 2.5025 0.0002 26 6 3.4352 1.2690 -0.0002 27 17 4.3785 -0.1884 -0.0016 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.2358 4.3860 0.0113 32 1 4.4527 7.6286 0.3753 33 1 3.8185 7.7030 -1.2962 34 1 2.4476 9.3556 -0.2091 35 1 2.3729 8.4106 1.3159 36 1 0.4316 8.3960 2.4626 37 1 -1.0123 7.3715 2.2785 38 1 0.6108 6.6590 2.1174 39 1 -4.3466 7.9991 -0.0462 40 1 1.2177 5.6725 0.7326 41 1 1.2775 5.5272 -1.0461 42 1 5.1331 2.5800 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980463270.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:16 Heat of formation + Delta-G solvation = 27.162635 kcal Electronic energy + Delta-G solvation = -27658.960021 eV Core-core repulsion = 23668.104165 eV Total energy + Delta-G solvation = -3990.855855 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.27853 -39.95208 -38.18886 -37.61809 -36.85288 -35.11084 -32.69992 -32.23421 -31.61393 -30.00416 -28.60524 -27.53345 -26.45885 -25.11480 -23.78513 -23.42991 -22.19291 -20.05705 -19.83721 -18.64266 -18.07488 -17.35890 -17.07755 -16.48560 -16.20388 -15.72867 -15.42085 -15.08426 -14.69862 -14.52866 -14.19646 -13.91295 -13.68467 -13.57957 -13.40959 -13.01649 -12.65809 -12.54444 -12.29570 -12.21679 -12.10726 -11.89403 -11.86830 -11.48161 -11.39457 -11.00377 -10.97884 -10.69120 -10.52232 -10.16003 -10.06677 -9.99167 -9.77362 -9.54971 -8.80562 -8.74313 -8.59231 -6.98314 -6.10029 -3.70736 0.37049 0.69312 1.73305 2.61825 2.65112 2.91779 3.19595 3.29938 3.37163 3.47555 3.94217 4.20487 4.34533 4.48051 4.56886 4.75738 4.81059 4.90325 5.01547 5.05087 5.10146 5.22474 5.26375 5.35449 5.41104 5.47716 5.53656 5.64654 5.68090 5.83311 5.91563 6.02042 6.10769 6.17701 6.32171 6.38211 6.49819 6.62165 6.73031 7.34174 7.45793 7.93326 8.05825 8.23001 8.76008 9.51049 9.89529 11.02876 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011908 B = 0.003976 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.702474 B = 7041.003530 C = 9028.679679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.293 6.293 3 C 0.352 3.648 4 N -0.524 5.524 5 C 0.148 3.852 6 C -0.213 4.213 7 C 0.583 3.417 8 O -0.543 6.543 9 N -0.606 5.606 10 C 0.109 3.891 11 C -0.151 4.151 12 C 0.176 3.824 13 H 0.095 0.905 14 N -0.598 5.598 15 C 0.109 3.891 16 C -0.279 4.279 17 H 0.083 0.917 18 C 0.036 3.964 19 N -0.904 5.904 20 Si 0.908 3.092 21 H -0.288 1.288 22 H -0.305 1.305 23 H -0.271 1.271 24 C 0.053 3.947 25 C 0.024 3.976 26 C -0.122 4.122 27 Cl -0.040 7.040 28 H 0.101 0.899 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.207 0.793 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.020 0.980 37 H 0.040 0.960 38 H 0.032 0.968 39 H 0.266 0.734 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.960 -12.874 0.451 17.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.199 6.199 3 C 0.172 3.828 4 N -0.247 5.247 5 C -0.008 4.008 6 C -0.219 4.219 7 C 0.372 3.628 8 O -0.423 6.423 9 N -0.338 5.338 10 C -0.013 4.013 11 C -0.191 4.191 12 C 0.067 3.933 13 H 0.113 0.887 14 N -0.321 5.321 15 C -0.035 4.035 16 C -0.408 4.408 17 H 0.101 0.899 18 C -0.165 4.165 19 N -0.545 5.545 20 Si 0.741 3.259 21 H -0.216 1.216 22 H -0.233 1.233 23 H -0.197 1.197 24 C -0.071 4.071 25 C -0.002 4.002 26 C -0.152 4.152 27 Cl -0.012 7.012 28 H 0.119 0.881 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.223 0.777 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.038 0.962 37 H 0.058 0.942 38 H 0.050 0.950 39 H 0.076 0.924 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 11.671 -13.371 0.513 17.756 hybrid contribution 0.328 -0.816 0.785 1.179 sum 11.999 -14.188 1.298 18.626 Atomic orbital electron populations 1.23026 0.76166 1.03502 1.03286 1.86272 1.23693 1.23545 1.86357 1.19882 0.87756 0.85940 0.89258 1.67740 1.38929 0.98256 1.19813 1.24851 0.93088 0.95576 0.87282 1.20736 0.94685 0.94420 1.12031 1.17358 0.85759 0.82760 0.76911 1.90770 1.13893 1.86461 1.51130 1.48327 1.07641 1.06791 1.71085 1.22310 0.98038 0.79608 1.01324 1.23379 0.94644 0.99055 1.02068 1.21539 0.86561 0.88483 0.96727 0.88693 1.43966 1.11574 1.74657 1.01858 1.21396 0.98689 0.97416 0.86000 1.18809 0.82679 1.14954 1.24365 0.89915 1.25585 0.95863 0.97017 0.98036 1.69746 0.97806 1.42810 1.44126 0.86539 0.76431 0.82726 0.80222 1.21623 1.23345 1.19664 1.23462 0.78839 1.03197 1.01598 1.21434 1.01760 0.88082 0.88903 1.20683 0.89374 0.89977 1.15162 1.98376 1.71312 1.34319 1.97150 0.88083 0.91679 0.91588 0.77735 0.90524 0.91162 0.89675 0.90649 0.96181 0.94205 0.94990 0.92442 0.89989 0.90333 0.81918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.37 101.05 1.05 1.38 16 2 O -0.29 -3.54 9.93 -18.26 -0.18 -3.72 16 3 C 0.35 4.68 7.49 -16.94 -0.13 4.55 16 4 N -0.52 -7.43 9.18 -12.94 -0.12 -7.55 16 5 C 0.15 2.07 9.80 -17.14 -0.17 1.90 16 6 C -0.21 -2.93 5.89 -104.83 -0.62 -3.55 16 7 C 0.58 8.81 7.81 -12.43 -0.10 8.71 16 8 O -0.54 -9.39 16.66 5.30 0.09 -9.30 16 9 N -0.61 -8.62 3.33 -174.89 -0.58 -9.20 16 10 C 0.11 1.41 6.94 -2.41 -0.02 1.39 16 11 C -0.15 -2.09 6.66 -24.47 -0.16 -2.25 16 12 C 0.18 2.91 3.44 -66.09 -0.23 2.68 16 13 H 0.10 1.59 7.95 -51.93 -0.41 1.17 16 14 N -0.60 -12.40 2.56 -171.38 -0.44 -12.83 16 15 C 0.11 2.12 7.68 59.85 0.46 2.58 16 16 C -0.28 -7.09 9.97 -15.06 -0.15 -7.24 16 17 H 0.08 2.28 8.06 -52.48 -0.42 1.86 16 18 C 0.04 0.97 5.49 -17.43 -0.10 0.88 16 19 N -0.90 -26.08 13.97 55.49 0.78 -25.31 16 20 Si 0.91 21.05 24.56 -169.99 -4.18 16.87 16 21 H -0.29 -6.63 6.97 56.52 0.39 -6.23 16 22 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 23 H -0.27 -5.82 6.34 56.52 0.36 -5.46 16 24 C 0.05 0.79 4.46 -3.07 -0.01 0.77 16 25 C 0.02 0.31 9.50 -38.88 -0.37 -0.06 16 26 C -0.12 -1.53 6.35 -39.27 -0.25 -1.78 16 27 Cl -0.04 -0.45 28.53 -51.86 -1.48 -1.93 16 28 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 30 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 31 H 0.21 2.89 2.75 -56.77 -0.16 2.74 16 32 H 0.08 0.98 7.99 -51.93 -0.41 0.57 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 1.09 7.06 -51.93 -0.37 0.72 16 36 H 0.02 0.37 7.88 -51.93 -0.41 -0.04 16 37 H 0.04 0.85 2.71 -51.93 -0.14 0.71 16 38 H 0.03 0.55 6.18 -51.93 -0.32 0.23 16 39 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.08 1.28 4.62 -51.93 -0.24 1.04 16 41 H 0.08 1.10 6.80 -51.93 -0.35 0.74 16 42 H 0.16 1.86 7.75 -52.48 -0.41 1.46 16 LS Contribution 349.64 15.07 5.27 5.27 Total: -1.00 -29.85 349.64 -6.57 -36.41 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -4.94 Total: 1.31 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: -0.79 Total: 9.96 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -0.36 Total: -54.89 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.09 Total: -13.02 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.18 Total: 16.87 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.48 Total: -1.93 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.85 -6.57 -36.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980463270.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.576 kcal (2) G-P(sol) polarization free energy of solvation -29.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds