Wall clock time and date at job start Wed Apr 1 2020 00:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35519 * 116.99892 * 2 1 4 4 N 1.32410 * 119.53026 * 0.02562 * 3 2 1 5 5 C 1.31652 * 121.80905 * 179.70005 * 4 3 2 6 6 C 1.39550 * 120.65165 * 0.54192 * 5 4 3 7 7 C 1.47613 * 120.49233 * 179.74673 * 6 5 4 8 8 O 1.21586 * 119.99745 * 127.19315 * 7 6 5 9 9 N 1.34778 * 120.00589 * 307.18949 * 7 6 5 10 10 C 1.48214 * 119.97006 * 0.30743 * 9 7 6 11 11 C 1.47135 * 110.34580 * 102.48216 * 10 9 7 12 12 C 1.53795 * 111.83742 * 58.29783 * 11 10 9 13 13 N 1.43464 * 107.96565 * 281.67352 * 12 11 10 14 14 C 1.36937 * 118.93793 * 273.62909 * 13 12 11 15 15 H 1.07994 * 120.00424 * 28.03805 * 14 13 12 16 16 C 1.38812 * 119.99983 * 208.03244 * 14 13 12 17 17 N 1.31623 * 119.99789 * 12.69913 * 16 14 13 18 18 Si 1.86798 * 120.00446 * 192.69964 * 16 14 13 19 19 H 1.48502 * 109.47284 * 89.99731 * 18 16 14 20 20 H 1.48495 * 109.47636 * 210.00199 * 18 16 14 21 21 H 1.48505 * 109.46726 * 330.00211 * 18 16 14 22 22 C 1.48943 * 122.11083 * 93.63074 * 13 12 11 23 23 C 1.43619 * 119.97403 * 180.32790 * 9 7 6 24 24 C 1.40252 * 119.00986 * 359.47458 * 6 5 4 25 25 C 1.38087 * 118.34548 * 0.24814 * 24 6 5 26 26 Cl 1.73604 * 120.37757 * 179.97438 * 25 24 6 27 27 H 1.09001 * 109.47242 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47486 * 300.00091 * 1 2 3 29 29 H 1.08998 * 109.47259 * 60.00037 * 1 2 3 30 30 H 1.08001 * 119.67494 * 180.28337 * 5 4 3 31 31 H 1.08994 * 109.32665 * 222.75703 * 10 9 7 32 32 H 1.09005 * 109.32046 * 342.39376 * 10 9 7 33 33 H 1.08996 * 109.01178 * 178.90593 * 11 10 9 34 34 H 1.09004 * 109.01026 * 297.77391 * 11 10 9 35 35 H 1.08993 * 109.76476 * 41.29317 * 12 11 10 36 36 H 1.09005 * 109.76528 * 162.00819 * 12 11 10 37 37 H 0.96998 * 119.99830 * 180.02562 * 17 16 14 38 38 H 1.08992 * 109.48250 * 200.63833 * 22 13 12 39 39 H 1.08994 * 109.49190 * 80.59021 * 22 13 12 40 40 H 1.09004 * 108.87433 * 31.45243 * 23 9 7 41 41 H 1.08997 * 108.86812 * 149.88709 * 23 9 7 42 42 H 1.08001 * 120.82938 * 180.23124 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 7 1.3140 2.3120 0.0005 5 6 1.8645 3.5079 0.0064 6 6 3.2525 3.6521 0.0010 7 6 3.8661 4.9947 0.0020 8 8 4.7012 5.2808 0.8381 9 7 3.5007 5.9034 -0.9239 10 6 2.4777 5.5563 -1.9387 11 6 1.1821 6.1574 -1.5854 12 6 1.2751 7.6879 -1.4658 13 7 1.8688 7.9974 -0.1970 14 6 1.0628 8.0931 0.9059 15 1 0.1423 7.5303 0.9526 16 6 1.4291 8.9134 1.9641 17 7 2.4056 9.7832 1.8151 18 14 0.5363 8.7828 3.5998 19 1 1.2224 7.7855 4.4600 20 1 0.5424 10.1057 4.2741 21 1 -0.8657 8.3531 3.3653 22 6 3.3335 8.2179 -0.0410 23 6 4.1032 7.2071 -0.9266 24 6 4.0559 2.5025 0.0004 25 6 3.4352 1.2690 0.0000 26 17 4.3784 -0.1885 -0.0014 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.2358 4.3860 0.0113 31 1 2.7948 5.9290 -2.9126 32 1 2.3690 4.4727 -1.9851 33 1 0.4521 5.9051 -2.3545 34 1 0.8488 5.7477 -0.6319 35 1 1.8961 8.0833 -2.2696 36 1 0.2774 8.1234 -1.5228 37 1 2.6619 10.3562 2.5546 38 1 3.6137 8.0740 1.0024 39 1 3.5831 9.2336 -0.3478 40 1 5.1260 7.1237 -0.5591 41 1 4.1277 7.5820 -1.9498 42 1 5.1331 2.5800 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989719834.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:44 Heat of formation + Delta-G solvation = 4.581724 kcal Electronic energy + Delta-G solvation = -28276.225379 eV Core-core repulsion = 24284.390342 eV Total energy + Delta-G solvation = -3991.835037 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.13726 -39.73255 -37.96750 -37.01668 -36.76152 -34.42873 -32.65628 -32.46878 -31.48458 -30.50050 -28.03238 -27.33279 -25.54289 -24.43884 -23.81106 -23.35926 -22.03255 -19.91718 -19.13713 -18.71098 -17.64156 -17.30396 -16.71341 -16.38115 -15.92123 -15.55996 -15.09959 -14.66391 -14.43607 -14.13894 -13.88690 -13.84684 -13.66664 -13.43763 -13.23959 -12.88382 -12.54151 -12.34935 -12.15833 -12.13947 -11.70227 -11.44215 -11.32819 -11.24583 -10.94577 -10.78962 -10.64644 -10.45462 -10.25183 -10.19316 -9.96204 -9.81877 -9.70547 -9.42236 -8.60183 -8.47436 -8.14334 -6.68159 -5.78638 -3.25276 0.61584 0.81815 1.82722 2.70323 2.89804 3.34519 3.38739 3.44947 3.46383 3.47353 4.03859 4.39991 4.50306 4.61627 4.71587 5.00877 5.05427 5.10502 5.11115 5.27541 5.39499 5.41992 5.46403 5.54484 5.68982 5.76163 5.84367 5.93992 6.09199 6.12224 6.31101 6.35905 6.38521 6.71415 6.81851 6.88866 6.91220 7.38814 7.43992 7.59294 7.75139 7.82567 8.45713 8.51464 9.20667 9.87788 10.34166 11.29067 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013784 B = 0.003750 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.868291 B = 7465.508417 C = 7932.690145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.295 6.295 3 C 0.342 3.658 4 N -0.523 5.523 5 C 0.177 3.823 6 C -0.193 4.193 7 C 0.567 3.433 8 O -0.530 6.530 9 N -0.574 5.574 10 C 0.117 3.883 11 C -0.179 4.179 12 C 0.163 3.837 13 N -0.590 5.590 14 C -0.262 4.262 15 H 0.063 0.937 16 C 0.011 3.989 17 N -0.903 5.903 18 Si 0.898 3.102 19 H -0.287 1.287 20 H -0.291 1.291 21 H -0.279 1.279 22 C 0.168 3.832 23 C 0.089 3.911 24 C 0.009 3.991 25 C -0.116 4.116 26 Cl -0.043 7.043 27 H 0.098 0.902 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.185 0.815 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.035 0.965 36 H 0.048 0.952 37 H 0.254 0.746 38 H 0.076 0.924 39 H 0.042 0.958 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.133 -16.664 -9.383 19.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.201 6.201 3 C 0.162 3.838 4 N -0.247 5.247 5 C 0.021 3.979 6 C -0.199 4.199 7 C 0.353 3.647 8 O -0.407 6.407 9 N -0.304 5.304 10 C -0.005 4.005 11 C -0.220 4.220 12 C 0.035 3.965 13 N -0.312 5.312 14 C -0.392 4.392 15 H 0.081 0.919 16 C -0.188 4.188 17 N -0.547 5.547 18 Si 0.728 3.272 19 H -0.214 1.214 20 H -0.217 1.217 21 H -0.205 1.205 22 C 0.042 3.958 23 C -0.036 4.036 24 C -0.017 4.017 25 C -0.146 4.146 26 Cl -0.015 7.015 27 H 0.117 0.883 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.202 0.798 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.095 0.905 39 H 0.060 0.940 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.331 -16.843 -8.849 19.029 hybrid contribution 0.129 0.028 0.987 0.996 sum -0.202 -16.815 -7.862 18.564 Atomic orbital electron populations 1.22966 0.76531 1.03260 1.03015 1.86269 1.23398 1.23605 1.86824 1.19704 0.87650 0.85733 0.90675 1.67602 1.38924 0.98186 1.19990 1.23384 0.92081 0.94328 0.88131 1.20869 0.94949 0.94963 1.09131 1.17700 0.82162 0.83415 0.81466 1.90807 1.33564 1.79585 1.36774 1.47304 1.40073 1.13026 1.30039 1.20842 0.89082 0.99447 0.91112 1.22125 0.95804 1.02664 1.01389 1.20239 0.97201 0.90441 0.88663 1.43690 1.02264 1.82003 1.03230 1.19097 1.04176 1.20696 0.95228 0.91893 1.25048 0.98527 0.95793 0.99436 1.69982 1.31232 1.22479 1.30961 0.86359 0.79365 0.77006 0.84427 1.21406 1.21684 1.20460 1.21865 0.81738 0.93234 0.98919 1.22073 0.97861 0.82815 1.00821 1.21348 1.01351 0.88243 0.90774 1.20632 0.89356 0.89756 1.14829 1.98371 1.71416 1.34517 1.97150 0.88325 0.91818 0.91841 0.79848 0.91046 0.91441 0.91991 0.91306 0.94688 0.93379 0.93588 0.90526 0.93985 0.90871 0.92214 0.82530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.37 101.05 1.05 1.37 16 2 O -0.30 -3.50 9.93 -18.25 -0.18 -3.68 16 3 C 0.34 4.54 7.49 -16.93 -0.13 4.42 16 4 N -0.52 -7.25 9.18 -12.94 -0.12 -7.37 16 5 C 0.18 2.59 8.83 -17.14 -0.15 2.44 16 6 C -0.19 -2.95 4.71 -104.83 -0.49 -3.44 16 7 C 0.57 10.32 7.19 -12.43 -0.09 10.24 16 8 O -0.53 -11.64 16.62 5.29 0.09 -11.56 16 9 N -0.57 -9.69 2.46 -177.86 -0.44 -10.13 16 10 C 0.12 1.59 5.05 -5.92 -0.03 1.56 16 11 C -0.18 -2.66 5.39 -29.13 -0.16 -2.81 16 12 C 0.16 3.02 5.63 -5.23 -0.03 2.99 16 13 N -0.59 -13.65 2.53 -171.94 -0.43 -14.08 16 14 C -0.26 -6.88 9.25 -15.06 -0.14 -7.02 16 15 H 0.06 1.63 7.86 -52.49 -0.41 1.22 16 16 C 0.01 0.31 4.98 -17.43 -0.09 0.22 16 17 N -0.90 -25.81 11.00 55.49 0.61 -25.20 16 18 Si 0.90 21.88 29.57 -169.99 -5.03 16.85 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C 0.17 3.85 5.17 -1.70 -0.01 3.84 16 23 C 0.09 1.61 5.25 -4.58 -0.02 1.59 16 24 C 0.01 0.12 9.70 -38.88 -0.38 -0.26 16 25 C -0.12 -1.50 6.35 -39.27 -0.25 -1.75 16 26 Cl -0.04 -0.50 28.53 -51.86 -1.48 -1.98 16 27 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 29 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 30 H 0.19 2.78 4.66 -52.49 -0.24 2.53 16 31 H 0.07 0.84 8.05 -51.93 -0.42 0.42 16 32 H 0.07 0.82 5.49 -51.93 -0.29 0.54 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 1.15 5.15 -51.93 -0.27 0.89 16 35 H 0.03 0.60 7.59 -51.93 -0.39 0.20 16 36 H 0.05 0.92 8.02 -51.93 -0.42 0.50 16 37 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.08 2.08 6.68 -51.93 -0.35 1.74 16 39 H 0.04 1.03 7.96 -51.93 -0.41 0.61 16 40 H 0.07 1.36 7.37 -51.93 -0.38 0.97 16 41 H 0.06 0.94 7.73 -51.93 -0.40 0.53 16 42 H 0.16 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 351.90 15.07 5.30 5.30 Total: -1.00 -31.13 351.90 -7.82 -38.95 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -5.23 Total: -0.50 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: -0.91 Total: 13.39 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: -0.38 Total: -56.78 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.09 Total: -15.24 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.48 Total: -1.98 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.13 -7.82 -38.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989719834.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.533 kcal (2) G-P(sol) polarization free energy of solvation -31.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds