Wall clock time and date at job start Wed Apr 1 2020 00:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35519 * 116.99892 * 2 1 4 4 N 1.32410 * 119.53026 * 0.02562 * 3 2 1 5 5 C 1.31652 * 121.80905 * 179.70005 * 4 3 2 6 6 C 1.39550 * 120.65165 * 0.54192 * 5 4 3 7 7 C 1.47613 * 120.49233 * 179.74673 * 6 5 4 8 8 O 1.21586 * 119.99745 * 127.19315 * 7 6 5 9 9 N 1.34778 * 120.00589 * 307.18949 * 7 6 5 10 10 C 1.48214 * 119.97006 * 0.30743 * 9 7 6 11 11 C 1.47135 * 110.34580 * 102.48216 * 10 9 7 12 12 C 1.53795 * 111.83742 * 58.29783 * 11 10 9 13 13 N 1.43464 * 107.96565 * 281.67352 * 12 11 10 14 14 C 1.36937 * 118.93793 * 273.62909 * 13 12 11 15 15 H 1.07994 * 120.00424 * 28.03805 * 14 13 12 16 16 C 1.38812 * 119.99983 * 208.03244 * 14 13 12 17 17 N 1.31623 * 119.99789 * 12.69913 * 16 14 13 18 18 Si 1.86798 * 120.00446 * 192.69964 * 16 14 13 19 19 H 1.48502 * 109.47284 * 89.99731 * 18 16 14 20 20 H 1.48495 * 109.47636 * 210.00199 * 18 16 14 21 21 H 1.48505 * 109.46726 * 330.00211 * 18 16 14 22 22 C 1.48943 * 122.11083 * 93.63074 * 13 12 11 23 23 C 1.43619 * 119.97403 * 180.32790 * 9 7 6 24 24 C 1.40252 * 119.00986 * 359.47458 * 6 5 4 25 25 C 1.38087 * 118.34548 * 0.24814 * 24 6 5 26 26 Cl 1.73604 * 120.37757 * 179.97438 * 25 24 6 27 27 H 1.09001 * 109.47242 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47486 * 300.00091 * 1 2 3 29 29 H 1.08998 * 109.47259 * 60.00037 * 1 2 3 30 30 H 1.08001 * 119.67494 * 180.28337 * 5 4 3 31 31 H 1.08994 * 109.32665 * 222.75703 * 10 9 7 32 32 H 1.09005 * 109.32046 * 342.39376 * 10 9 7 33 33 H 1.08996 * 109.01178 * 178.90593 * 11 10 9 34 34 H 1.09004 * 109.01026 * 297.77391 * 11 10 9 35 35 H 1.08993 * 109.76476 * 41.29317 * 12 11 10 36 36 H 1.09005 * 109.76528 * 162.00819 * 12 11 10 37 37 H 0.96998 * 119.99830 * 180.02562 * 17 16 14 38 38 H 1.08992 * 109.48250 * 200.63833 * 22 13 12 39 39 H 1.08994 * 109.49190 * 80.59021 * 22 13 12 40 40 H 1.09004 * 108.87433 * 31.45243 * 23 9 7 41 41 H 1.08997 * 108.86812 * 149.88709 * 23 9 7 42 42 H 1.08001 * 120.82938 * 180.23124 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 7 1.3140 2.3120 0.0005 5 6 1.8645 3.5079 0.0064 6 6 3.2525 3.6521 0.0010 7 6 3.8661 4.9947 0.0020 8 8 4.7012 5.2808 0.8381 9 7 3.5007 5.9034 -0.9239 10 6 2.4777 5.5563 -1.9387 11 6 1.1821 6.1574 -1.5854 12 6 1.2751 7.6879 -1.4658 13 7 1.8688 7.9974 -0.1970 14 6 1.0628 8.0931 0.9059 15 1 0.1423 7.5303 0.9526 16 6 1.4291 8.9134 1.9641 17 7 2.4056 9.7832 1.8151 18 14 0.5363 8.7828 3.5998 19 1 1.2224 7.7855 4.4600 20 1 0.5424 10.1057 4.2741 21 1 -0.8657 8.3531 3.3653 22 6 3.3335 8.2179 -0.0410 23 6 4.1032 7.2071 -0.9266 24 6 4.0559 2.5025 0.0004 25 6 3.4352 1.2690 0.0000 26 17 4.3784 -0.1885 -0.0014 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.2358 4.3860 0.0113 31 1 2.7948 5.9290 -2.9126 32 1 2.3690 4.4727 -1.9851 33 1 0.4521 5.9051 -2.3545 34 1 0.8488 5.7477 -0.6319 35 1 1.8961 8.0833 -2.2696 36 1 0.2774 8.1234 -1.5228 37 1 2.6619 10.3562 2.5546 38 1 3.6137 8.0740 1.0024 39 1 3.5831 9.2336 -0.3478 40 1 5.1260 7.1237 -0.5591 41 1 4.1277 7.5820 -1.9498 42 1 5.1331 2.5800 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989719834.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:43 Heat of formation + Delta-G solvation = -16.202131 kcal Electronic energy + Delta-G solvation = -28277.126634 eV Core-core repulsion = 24284.390342 eV Total energy + Delta-G solvation = -3992.736293 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.25603 -40.98544 -39.02932 -38.51539 -37.73091 -36.09697 -33.96737 -33.73910 -33.09476 -31.83354 -29.44581 -28.34983 -27.13195 -25.84394 -25.04688 -24.69328 -23.34457 -21.51765 -20.48885 -19.69169 -18.83017 -18.63536 -18.37031 -17.44730 -17.20568 -16.99030 -16.50415 -16.00507 -15.58518 -15.53250 -15.46577 -15.10226 -14.85479 -14.74566 -14.62644 -14.21687 -13.92335 -13.79497 -13.38001 -13.16008 -13.04378 -12.86393 -12.83625 -12.45209 -12.33013 -12.27707 -12.17465 -12.05422 -11.81340 -11.67670 -11.52927 -11.28288 -11.00958 -10.71778 -10.51495 -9.67429 -9.56559 -8.60270 -7.83458 -5.30409 -0.47915 -0.24318 0.83143 1.41149 1.45169 1.50523 1.56740 1.79935 2.06778 2.33053 2.50949 2.99654 3.24694 3.32215 3.52009 3.70194 3.75116 3.93514 4.01407 4.19412 4.30635 4.38302 4.43941 4.46371 4.55964 4.56230 4.71198 4.73745 4.84334 4.85555 4.91935 4.98278 5.01160 5.29829 5.33177 5.55558 5.61538 5.72906 5.82715 5.89203 6.36174 6.40714 6.43457 7.12107 7.20466 7.96927 8.38796 9.21133 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013784 B = 0.003750 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.868291 B = 7465.508417 C = 7932.690145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.298 6.298 3 C 0.344 3.656 4 N -0.525 5.525 5 C 0.181 3.819 6 C -0.205 4.205 7 C 0.563 3.437 8 O -0.580 6.580 9 N -0.573 5.573 10 C 0.115 3.885 11 C -0.165 4.165 12 C 0.155 3.845 13 N -0.603 5.603 14 C -0.255 4.255 15 H 0.066 0.934 16 C -0.046 4.046 17 N -0.934 5.934 18 Si 0.950 3.050 19 H -0.299 1.299 20 H -0.295 1.295 21 H -0.263 1.263 22 C 0.180 3.820 23 C 0.102 3.898 24 C 0.016 3.984 25 C -0.117 4.117 26 Cl -0.028 7.028 27 H 0.129 0.871 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.180 0.820 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.049 0.951 35 H 0.054 0.946 36 H 0.041 0.959 37 H 0.245 0.755 38 H 0.024 0.976 39 H 0.018 0.982 40 H 0.065 0.935 41 H 0.096 0.904 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.375 -19.245 -11.471 22.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.204 6.204 3 C 0.164 3.836 4 N -0.249 5.249 5 C 0.024 3.976 6 C -0.211 4.211 7 C 0.351 3.649 8 O -0.460 6.460 9 N -0.303 5.303 10 C -0.006 4.006 11 C -0.206 4.206 12 C 0.028 3.972 13 N -0.326 5.326 14 C -0.386 4.386 15 H 0.084 0.916 16 C -0.242 4.242 17 N -0.580 5.580 18 Si 0.780 3.220 19 H -0.226 1.226 20 H -0.222 1.222 21 H -0.188 1.188 22 C 0.054 3.946 23 C -0.023 4.023 24 C -0.010 4.010 25 C -0.147 4.147 26 Cl 0.000 7.000 27 H 0.147 0.853 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.196 0.804 31 H 0.121 0.879 32 H 0.106 0.894 33 H 0.119 0.881 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.043 0.957 39 H 0.036 0.964 40 H 0.083 0.917 41 H 0.114 0.886 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -1.631 -19.468 -11.002 22.421 hybrid contribution 0.445 0.704 1.567 1.775 sum -1.186 -18.764 -9.435 21.036 Atomic orbital electron populations 1.23248 0.74774 1.05352 1.02950 1.86287 1.25123 1.22705 1.86271 1.19880 0.87944 0.86046 0.89747 1.67624 1.38870 0.98029 1.20339 1.23232 0.91575 0.94544 0.88218 1.20592 0.95309 0.93801 1.11413 1.18175 0.81477 0.84567 0.80720 1.90779 1.35897 1.80683 1.38676 1.47461 1.40419 1.12056 1.30322 1.21111 0.87376 1.00843 0.91257 1.21917 0.97618 0.99164 1.01869 1.20497 0.96770 0.93011 0.86907 1.43887 1.02088 1.82265 1.04351 1.19416 1.04036 1.19026 0.96091 0.91582 1.25689 0.99803 0.96444 1.02258 1.70133 1.33014 1.23770 1.31117 0.85522 0.79098 0.76202 0.81222 1.22646 1.22175 1.18776 1.21498 0.82592 0.93658 0.96867 1.21752 0.96490 0.82610 1.01421 1.21428 1.01781 0.87931 0.89899 1.20652 0.89565 0.90095 1.14361 1.98378 1.71027 1.33514 1.97043 0.85260 0.92314 0.91425 0.80394 0.87874 0.89419 0.88089 0.93229 0.92771 0.94084 0.94547 0.95742 0.96363 0.91680 0.88624 0.81567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.37 113.37 1.18 1.63 16 2 O -0.30 -6.27 9.93 -88.21 -0.88 -7.15 16 3 C 0.34 8.34 7.49 84.84 0.64 8.98 16 4 N -0.52 -13.42 9.18 -307.73 -2.82 -16.25 16 5 C 0.18 4.99 8.83 85.04 0.75 5.75 16 6 C -0.21 -6.02 4.71 -20.00 -0.09 -6.12 16 7 C 0.56 20.37 7.19 86.72 0.62 20.99 16 8 O -0.58 -26.20 16.62 -3.99 -0.07 -26.27 16 9 N -0.57 -18.58 2.46 -834.90 -2.05 -20.63 16 10 C 0.11 2.70 5.05 84.23 0.43 3.13 16 11 C -0.17 -4.39 5.39 29.04 0.16 -4.23 16 12 C 0.15 5.40 5.63 87.21 0.49 5.90 16 13 N -0.60 -27.96 2.53 -697.88 -1.77 -29.73 16 14 C -0.25 -13.52 9.25 84.03 0.78 -12.75 16 15 H 0.07 3.40 7.86 -2.91 -0.02 3.38 16 16 C -0.05 -2.61 4.98 84.86 0.42 -2.19 16 17 N -0.93 -55.81 11.00 21.65 0.24 -55.57 16 18 Si 0.95 46.14 29.57 68.60 2.03 48.17 16 19 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 20 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 21 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 22 C 0.18 8.51 5.17 86.55 0.45 8.96 16 23 C 0.10 3.67 5.25 87.55 0.46 4.13 16 24 C 0.02 0.40 9.70 22.72 0.22 0.62 16 25 C -0.12 -2.78 6.35 22.47 0.14 -2.64 16 26 Cl -0.03 -0.59 28.53 -2.72 -0.08 -0.67 16 27 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.06 0.93 8.10 -2.39 -0.02 0.91 16 29 H 0.07 0.95 8.10 -2.39 -0.02 0.93 16 30 H 0.18 5.14 4.66 -2.91 -0.01 5.12 16 31 H 0.10 1.87 8.05 -2.39 -0.02 1.85 16 32 H 0.09 1.80 5.49 -2.38 -0.01 1.79 16 33 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.05 1.55 5.15 -2.39 -0.01 1.54 16 35 H 0.05 1.69 7.59 -2.39 -0.02 1.67 16 36 H 0.04 1.49 8.02 -2.38 -0.02 1.47 16 37 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 38 H 0.02 1.39 6.68 -2.39 -0.02 1.37 16 39 H 0.02 0.94 7.96 -2.39 -0.02 0.92 16 40 H 0.06 2.45 7.37 -2.38 -0.02 2.43 16 41 H 0.10 2.75 7.73 -2.39 -0.02 2.73 16 42 H 0.17 3.82 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -70.76 351.90 2.30 -68.46 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: 1.06 Total: 7.49 kcal Atomic # 6 Polarization: 25.52 SS G_CDS: 6.63 Total: 32.15 kcal Atomic # 7 Polarization: -115.78 SS G_CDS: -6.40 Total: -122.18 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.94 Total: -33.41 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -0.08 Total: -0.67 kcal Total: -70.76 2.30 -68.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989719834.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.257 kcal (2) G-P(sol) polarization free energy of solvation -70.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds