Wall clock time and date at job start Tue Mar 31 2020 22:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35524 * 117.00211 * 2 1 4 4 N 1.32400 * 119.53017 * 359.97139 * 3 2 1 5 5 C 1.31656 * 121.81268 * 179.75029 * 4 3 2 6 6 C 1.39545 * 120.64774 * 0.53714 * 5 4 3 7 7 C 1.47626 * 120.49034 * 179.75060 * 6 5 4 8 8 O 1.21578 * 120.00087 * 6.66037 * 7 6 5 9 9 N 1.34772 * 119.99592 * 186.65350 * 7 6 5 10 10 C 1.47026 * 125.65328 * 354.45390 * 9 7 6 11 11 C 1.54322 * 107.40479 * 181.10351 * 10 9 7 12 12 H 1.09001 * 110.71256 * 263.74916 * 11 10 9 13 13 N 1.46494 * 110.72348 * 140.47608 * 11 10 9 14 14 C 1.36939 * 120.00254 * 86.44987 * 13 11 10 15 15 H 1.07998 * 119.99624 * 359.97438 * 14 13 11 16 16 C 1.38806 * 120.00151 * 179.97438 * 14 13 11 17 17 N 1.31621 * 119.99962 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00112 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46861 * 90.00174 * 18 16 14 20 20 H 1.48493 * 109.47087 * 210.00219 * 18 16 14 21 21 H 1.48498 * 109.47084 * 330.00280 * 18 16 14 22 22 C 1.55152 * 102.94451 * 22.10546 * 11 10 9 23 23 C 1.47749 * 125.82240 * 174.35400 * 9 7 6 24 24 H 1.09001 * 110.43357 * 274.71338 * 23 9 7 25 25 C 1.53005 * 110.28921 * 37.02468 * 23 9 7 26 26 C 1.40245 * 119.01382 * 359.48122 * 6 5 4 27 27 C 1.38089 * 118.34335 * 0.24761 * 26 6 5 28 28 Cl 1.73604 * 120.37588 * 179.97438 * 27 26 6 29 29 H 1.09008 * 109.46978 * 60.00081 * 1 2 3 30 30 H 1.08999 * 109.47461 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47649 * 300.00375 * 1 2 3 32 32 H 1.08004 * 119.67401 * 180.29344 * 5 4 3 33 33 H 1.08992 * 109.88577 * 61.59918 * 10 9 7 34 34 H 1.09000 * 109.87649 * 300.59316 * 10 9 7 35 35 H 0.96996 * 119.99573 * 266.44931 * 13 11 10 36 36 H 0.97001 * 119.99822 * 179.97438 * 17 16 14 37 37 H 1.09008 * 111.00387 * 82.57647 * 22 11 10 38 38 H 1.08997 * 111.00971 * 206.42672 * 22 11 10 39 39 H 1.08996 * 109.47016 * 175.37835 * 25 23 9 40 40 H 1.08997 * 109.47294 * 295.38206 * 25 23 9 41 41 H 1.09001 * 109.46643 * 55.38020 * 25 23 9 42 42 H 1.07997 * 120.82881 * 180.27116 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 7 1.3141 2.3120 -0.0006 5 6 1.8646 3.5079 0.0043 6 6 3.2526 3.6521 -0.0010 7 6 3.8662 4.9947 -0.0011 8 8 3.1682 5.9821 0.1256 9 7 5.2002 5.1259 -0.1414 10 6 6.1697 4.0216 -0.1874 11 6 7.5739 4.6458 -0.3293 12 1 7.8830 4.6661 -1.3744 13 7 8.5492 3.9190 0.4871 14 6 9.1797 2.8145 -0.0207 15 1 8.9576 2.4791 -1.0229 16 6 10.1042 2.1261 0.7527 17 7 10.3745 2.5346 1.9744 18 14 10.9637 0.6190 0.0603 19 1 12.2154 1.0333 -0.6230 20 1 11.2899 -0.3167 1.1662 21 1 10.0692 -0.0575 -0.9130 22 6 7.3703 6.0859 0.2110 23 6 5.9342 6.4010 -0.2769 24 1 5.9493 6.7226 -1.3182 25 6 5.2963 7.4767 0.6047 26 6 4.0559 2.5024 -0.0005 27 6 3.4352 1.2689 0.0000 28 17 4.3784 -0.1885 0.0000 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.2358 4.3860 0.0084 33 1 5.9609 3.3803 -1.0436 34 1 6.1137 3.4406 0.7331 35 1 8.7484 4.2201 1.3874 36 1 11.0203 2.0533 2.5150 37 1 7.4265 6.1065 1.2994 38 1 8.0922 6.7740 -0.2290 39 1 5.8948 8.3864 0.5583 40 1 4.2876 7.6868 0.2490 41 1 5.2520 7.1230 1.6347 42 1 5.1331 2.5799 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989816681.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:16 Heat of formation + Delta-G solvation = 2.229646 kcal Electronic energy + Delta-G solvation = -27431.125347 eV Core-core repulsion = 23439.188316 eV Total energy + Delta-G solvation = -3991.937031 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.18805 -39.97848 -38.14035 -37.35029 -36.57891 -34.28475 -33.41650 -31.54700 -31.45425 -30.49219 -28.54005 -27.69948 -25.90939 -24.62739 -23.88811 -23.38149 -21.81773 -20.52323 -19.54391 -18.63803 -17.68593 -17.26716 -16.84072 -16.48195 -16.31675 -15.50682 -15.12866 -14.78398 -14.55426 -14.51986 -14.11704 -13.80654 -13.64010 -13.49358 -13.03739 -12.98404 -12.75663 -12.24550 -12.13589 -12.04379 -11.98171 -11.83475 -11.46237 -11.28398 -11.12985 -11.02295 -10.78727 -10.74469 -10.42763 -10.15811 -10.09871 -9.90893 -9.81356 -9.54219 -9.04748 -8.72457 -8.42584 -7.17943 -5.91519 -3.23491 0.47019 0.80862 1.98939 2.66911 2.74688 3.01770 3.36108 3.42407 3.43540 3.58185 3.98417 4.32352 4.48047 4.60261 4.69120 4.89467 4.96096 5.01200 5.04464 5.11868 5.15541 5.32649 5.38420 5.42479 5.47422 5.53430 5.69059 5.77202 5.78821 5.90937 5.96797 6.01096 6.08568 6.31074 6.36688 6.37910 6.58852 6.73133 6.79639 7.36835 7.57008 7.64110 8.19743 8.25609 9.38046 9.89904 10.24596 11.30057 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.008915 B = 0.004553 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3139.938190 B = 6148.587021 C = 9030.494790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.293 6.293 3 C 0.348 3.652 4 N -0.533 5.533 5 C 0.202 3.798 6 C -0.210 4.210 7 C 0.584 3.416 8 O -0.543 6.543 9 N -0.602 5.602 10 C 0.056 3.944 11 C 0.172 3.828 12 H 0.069 0.931 13 N -0.712 5.712 14 C -0.254 4.254 15 H 0.074 0.926 16 C -0.003 4.003 17 N -0.927 5.927 18 Si 0.905 3.095 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.280 1.280 22 C -0.137 4.137 23 C 0.138 3.862 24 H 0.076 0.924 25 C -0.159 4.159 26 C -0.035 4.035 27 C -0.116 4.116 28 Cl -0.031 7.031 29 H 0.062 0.938 30 H 0.099 0.901 31 H 0.062 0.938 32 H 0.179 0.821 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.388 0.612 36 H 0.258 0.742 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.058 0.942 40 H 0.081 0.919 41 H 0.055 0.945 42 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.637 1.277 -4.619 17.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.198 6.198 3 C 0.168 3.832 4 N -0.256 5.256 5 C 0.044 3.956 6 C -0.215 4.215 7 C 0.373 3.627 8 O -0.423 6.423 9 N -0.335 5.335 10 C -0.070 4.070 11 C 0.060 3.940 12 H 0.087 0.913 13 N -0.352 5.352 14 C -0.385 4.385 15 H 0.092 0.908 16 C -0.201 4.201 17 N -0.574 5.574 18 Si 0.736 3.264 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.205 1.205 22 C -0.176 4.176 23 C 0.035 3.965 24 H 0.094 0.906 25 C -0.217 4.217 26 C -0.060 4.060 27 C -0.146 4.146 28 Cl -0.002 7.002 29 H 0.081 0.919 30 H 0.118 0.882 31 H 0.081 0.919 32 H 0.196 0.804 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.223 0.777 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.074 0.926 42 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -17.686 1.105 -4.623 18.313 hybrid contribution 1.272 -0.985 0.018 1.609 sum -16.414 0.120 -4.604 17.048 Atomic orbital electron populations 1.22963 0.76647 1.03362 1.02783 1.86306 1.23319 1.23624 1.86545 1.19814 0.87883 0.85603 0.89890 1.67584 1.38971 0.98252 1.20821 1.22711 0.91641 0.93759 0.87470 1.20787 0.95076 0.94051 1.11628 1.17390 0.80822 0.87627 0.76844 1.90714 1.61376 1.38740 1.51444 1.48551 1.04921 1.09329 1.70674 1.23841 0.91895 0.89950 1.01312 1.21204 0.87109 0.89442 0.96268 0.91311 1.42391 1.45310 1.31657 1.15803 1.19232 1.17603 1.03120 0.98535 0.90846 1.24755 0.99704 0.99450 0.96142 1.69655 1.37189 1.41744 1.08770 0.86231 0.79741 0.82593 0.77875 1.21533 1.21660 1.20503 1.23164 0.94163 0.98161 1.02089 1.21990 0.91137 0.83826 0.99521 0.90564 1.22139 1.02343 0.97355 0.99838 1.23401 1.04809 0.88841 0.88941 1.20844 0.89311 0.90755 1.13704 1.98413 1.71001 1.33864 1.96944 0.91943 0.88236 0.91922 0.80395 0.91367 0.89814 0.77736 0.93247 0.90315 0.89871 0.92289 0.90039 0.92624 0.78786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.37 101.05 1.05 1.36 16 2 O -0.29 -3.58 9.93 -18.26 -0.18 -3.76 16 3 C 0.35 4.70 7.49 -16.94 -0.13 4.57 16 4 N -0.53 -6.88 9.18 -12.94 -0.12 -6.99 16 5 C 0.20 2.57 10.76 -17.14 -0.18 2.39 16 6 C -0.21 -2.92 5.89 -104.82 -0.62 -3.54 16 7 C 0.58 8.87 7.64 -12.43 -0.10 8.78 16 8 O -0.54 -8.99 14.01 5.30 0.07 -8.91 16 9 N -0.60 -8.87 3.25 -165.15 -0.54 -9.41 16 10 C 0.06 0.87 4.62 -3.06 -0.01 0.85 16 11 C 0.17 2.95 3.59 -66.10 -0.24 2.71 16 12 H 0.07 1.17 8.12 -51.93 -0.42 0.75 16 13 N -0.71 -15.83 5.17 -51.66 -0.27 -16.10 16 14 C -0.25 -6.39 9.98 -15.06 -0.15 -6.54 16 15 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 16 C 0.00 -0.09 5.50 -17.43 -0.10 -0.19 16 17 N -0.93 -26.29 13.06 55.49 0.72 -25.57 16 18 Si 0.91 21.19 29.55 -169.99 -5.02 16.16 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 C -0.14 -1.98 6.11 -24.59 -0.15 -2.13 16 23 C 0.14 1.87 3.80 -66.24 -0.25 1.61 16 24 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 25 C -0.16 -2.07 8.52 37.16 0.32 -1.76 16 26 C -0.04 -0.50 8.48 -38.88 -0.33 -0.83 16 27 C -0.12 -1.65 6.35 -39.27 -0.25 -1.90 16 28 Cl -0.03 -0.45 28.53 -51.86 -1.48 -1.93 16 29 H 0.06 0.51 8.10 -51.92 -0.42 0.08 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 32 H 0.18 1.97 7.67 -52.48 -0.40 1.57 16 33 H 0.07 1.01 6.74 -51.93 -0.35 0.66 16 34 H 0.08 1.44 6.61 -51.93 -0.34 1.09 16 35 H 0.39 9.33 7.71 -40.82 -0.31 9.01 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 37 H 0.08 1.21 7.92 -51.92 -0.41 0.80 16 38 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 1.16 6.11 -51.93 -0.32 0.85 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.20 2.87 2.90 -54.02 -0.16 2.71 16 LS Contribution 359.91 15.07 5.42 5.42 Total: -1.00 -29.07 359.91 -7.74 -36.81 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -5.22 Total: 8.89 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: -1.14 Total: 5.39 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: -0.20 Total: -58.07 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -0.11 Total: -12.68 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.48 Total: -1.93 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.07 -7.74 -36.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989816681.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.040 kcal (2) G-P(sol) polarization free energy of solvation -29.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds