Wall clock time and date at job start Wed Apr 1 2020 00:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35518 * 116.99914 * 2 1 4 4 N 1.32412 * 119.53570 * 0.02562 * 3 2 1 5 5 C 1.31645 * 121.81593 * 179.97438 * 4 3 2 6 6 C 1.39547 * 120.65197 * 359.97438 * 5 4 3 7 7 C 1.47617 * 120.49827 * 179.97438 * 6 5 4 8 8 O 1.21581 * 119.99290 * 319.57513 * 7 6 5 9 9 N 1.34770 * 120.00325 * 139.57184 * 7 6 5 10 10 C 1.46928 * 120.60677 * 354.21743 * 9 7 6 11 11 C 1.53192 * 108.77373 * 233.53545 * 10 9 7 12 12 C 1.53047 * 109.33364 * 305.41060 * 11 10 9 13 13 C 1.53036 * 109.53836 * 61.35111 * 12 11 10 14 14 H 1.09001 * 109.49676 * 58.58488 * 13 12 11 15 15 N 1.46499 * 109.49664 * 178.64871 * 13 12 11 16 16 C 1.36936 * 120.00016 * 204.99971 * 15 13 12 17 17 H 1.08005 * 120.00084 * 359.97438 * 16 15 13 18 18 C 1.38812 * 120.00201 * 180.02562 * 16 15 13 19 19 N 1.31617 * 119.99608 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00189 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47263 * 89.99497 * 20 18 16 22 22 H 1.48499 * 109.46844 * 209.99731 * 20 18 16 23 23 H 1.48500 * 109.46892 * 329.99176 * 20 18 16 24 24 C 1.46929 * 120.63200 * 174.19338 * 9 7 6 25 25 C 1.40249 * 119.00869 * 0.24883 * 6 5 4 26 26 C 1.38080 * 118.34797 * 359.50965 * 25 6 5 27 27 Cl 1.73608 * 120.38312 * 180.23753 * 26 25 6 28 28 H 1.08995 * 109.47215 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47199 * 300.00184 * 1 2 3 30 30 H 1.09002 * 109.46951 * 59.99926 * 1 2 3 31 31 H 1.08001 * 119.67322 * 180.02562 * 5 4 3 32 32 H 1.09006 * 109.56509 * 113.76153 * 10 9 7 33 33 H 1.09003 * 109.61827 * 353.33176 * 10 9 7 34 34 H 1.08998 * 109.49719 * 185.44908 * 11 10 9 35 35 H 1.08992 * 109.50169 * 65.37334 * 11 10 9 36 36 H 1.09000 * 109.45686 * 181.37422 * 12 11 10 37 37 H 1.08998 * 109.45812 * 301.32570 * 12 11 10 38 38 H 0.96998 * 119.99835 * 24.99889 * 15 13 12 39 39 H 0.97011 * 119.99707 * 180.02562 * 19 18 16 40 40 H 1.09008 * 109.58551 * 6.64517 * 24 9 7 41 41 H 1.08999 * 109.58648 * 246.22853 * 24 9 7 42 42 H 1.08002 * 120.82825 * 179.75013 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 7 1.3141 2.3121 0.0005 5 6 1.8646 3.5079 0.0010 6 6 3.2526 3.6522 0.0016 7 6 3.8663 4.9947 0.0016 8 8 3.3902 5.8806 -0.6816 9 7 4.9542 5.2384 0.7589 10 6 5.4653 4.2181 1.6844 11 6 5.5846 4.8352 3.0815 12 6 6.4415 6.1009 3.0048 13 6 5.7681 7.1198 2.0826 14 1 4.7735 7.3530 2.4629 15 7 6.5727 8.3432 2.0353 16 6 5.9819 9.5398 1.7282 17 1 4.9229 9.5816 1.5205 18 6 6.7444 10.6989 1.6828 19 7 8.0351 10.6478 1.9355 20 14 5.9383 12.3313 1.2646 21 1 5.4686 12.9855 2.5123 22 1 6.9239 13.2104 0.5856 23 1 4.7818 12.0958 0.3634 24 6 5.6515 6.5289 0.6742 25 6 4.0559 2.5025 -0.0037 26 6 3.4353 1.2690 0.0011 27 17 4.3785 -0.1885 0.0011 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.2358 4.3860 0.0019 32 1 6.4458 3.8797 1.3494 33 1 4.7761 3.3741 1.7155 34 1 6.0531 4.1191 3.7566 35 1 4.5920 5.0899 3.4528 36 1 6.5480 6.5282 4.0019 37 1 7.4262 5.8495 2.6107 38 1 7.5239 8.3055 2.2215 39 1 8.5679 11.4579 1.9041 40 1 5.0851 7.2093 0.0381 41 1 6.6473 6.3794 0.2569 42 1 5.1331 2.5800 -0.0075 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000984347.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:36 Heat of formation + Delta-G solvation = -41.932883 kcal Electronic energy + Delta-G solvation = -26989.063730 eV Core-core repulsion = 22995.211668 eV Total energy + Delta-G solvation = -3993.852062 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.25668 -41.01858 -39.13365 -38.53975 -37.68862 -36.29706 -34.35295 -33.41664 -32.76144 -32.04821 -29.93441 -28.50561 -26.86977 -25.93909 -24.86803 -24.56397 -23.25098 -21.94109 -20.57260 -19.66553 -19.13686 -18.86954 -18.19627 -17.41718 -17.21644 -16.78166 -16.32829 -16.22098 -15.81409 -15.53415 -15.41677 -15.31098 -15.00868 -14.79598 -14.70182 -14.25502 -13.98444 -13.92789 -13.62010 -13.15423 -13.09349 -12.89562 -12.86841 -12.50849 -12.32823 -12.23189 -12.21032 -12.03168 -11.89565 -11.71580 -11.46025 -11.33970 -11.09406 -10.94929 -10.72239 -9.85809 -9.62749 -9.01127 -7.97776 -5.26624 -0.52017 -0.27078 0.86379 1.45410 1.46544 1.52368 1.55545 1.76528 1.88445 2.38108 2.54327 3.00632 3.22269 3.35784 3.51804 3.64216 3.75140 3.90804 4.03775 4.04991 4.18118 4.22834 4.33687 4.39630 4.42486 4.43462 4.57511 4.67319 4.71999 4.73259 4.86525 4.89432 4.92448 5.03751 5.14313 5.38201 5.44131 5.45504 5.55666 5.88498 6.24988 6.29794 6.41033 6.99971 7.32051 8.04416 8.29322 9.24763 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.021448 B = 0.002567 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.194744 B =10906.593326 C =11683.865063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.299 6.299 3 C 0.347 3.653 4 N -0.531 5.531 5 C 0.201 3.799 6 C -0.209 4.209 7 C 0.563 3.437 8 O -0.578 6.578 9 N -0.594 5.594 10 C 0.093 3.907 11 C -0.121 4.121 12 C -0.118 4.118 13 C 0.167 3.833 14 H 0.032 0.968 15 N -0.729 5.729 16 C -0.243 4.243 17 H 0.066 0.934 18 C -0.068 4.068 19 N -0.963 5.963 20 Si 0.966 3.034 21 H -0.285 1.285 22 H -0.292 1.292 23 H -0.276 1.276 24 C 0.108 3.892 25 C 0.009 3.991 26 C -0.119 4.119 27 Cl -0.026 7.026 28 H 0.128 0.872 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.180 0.820 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.378 0.622 39 H 0.252 0.748 40 H 0.053 0.947 41 H 0.067 0.933 42 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.585 -27.862 -0.618 29.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.204 6.204 3 C 0.167 3.833 4 N -0.255 5.255 5 C 0.044 3.956 6 C -0.215 4.215 7 C 0.352 3.648 8 O -0.459 6.459 9 N -0.326 5.326 10 C -0.028 4.028 11 C -0.160 4.160 12 C -0.156 4.156 13 C 0.057 3.943 14 H 0.050 0.950 15 N -0.369 5.369 16 C -0.375 4.375 17 H 0.084 0.916 18 C -0.261 4.261 19 N -0.614 5.614 20 Si 0.795 3.205 21 H -0.212 1.212 22 H -0.219 1.219 23 H -0.201 1.201 24 C -0.017 4.017 25 C -0.016 4.016 26 C -0.149 4.149 27 Cl 0.003 6.997 28 H 0.146 0.854 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.197 0.803 32 H 0.116 0.884 33 H 0.123 0.877 34 H 0.129 0.871 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.210 0.790 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -11.676 -27.781 -0.996 30.152 hybrid contribution 0.780 1.632 -0.329 1.838 sum -10.897 -26.150 -1.326 28.360 Atomic orbital electron populations 1.23242 0.74791 1.05360 1.02908 1.86299 1.25113 1.22907 1.86088 1.19960 0.88188 0.85952 0.89211 1.67634 1.39018 0.98171 1.20720 1.22773 0.91450 0.94197 0.87188 1.20513 0.95534 0.92997 1.12440 1.18259 0.79904 0.87234 0.79425 1.90812 1.63110 1.47463 1.44473 1.48183 1.27797 1.16392 1.40236 1.22405 1.01390 0.90188 0.88811 1.21871 1.00512 0.96849 0.96750 1.21741 0.99500 0.95152 0.99257 1.20651 0.94364 0.86416 0.92866 0.95029 1.42506 1.08321 1.02667 1.83401 1.19511 0.93135 0.86578 1.38259 0.91596 1.25464 0.96258 1.01029 1.03321 1.69788 1.05941 1.28176 1.57447 0.85251 0.77306 0.80173 0.77729 1.21174 1.21860 1.20137 1.22301 0.95847 0.83345 1.00241 1.21776 1.02234 0.87874 0.89743 1.20708 0.89470 0.90408 1.14306 1.98399 1.70801 1.33539 1.97003 0.85372 0.91724 0.91989 0.80315 0.88410 0.87722 0.87080 0.92065 0.92091 0.91080 0.78950 0.93876 0.92825 0.91493 0.80294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.37 113.37 1.18 1.51 16 2 O -0.30 -4.96 9.93 -88.21 -0.88 -5.84 16 3 C 0.35 6.53 7.49 84.85 0.64 7.17 16 4 N -0.53 -10.67 9.18 -307.72 -2.82 -13.49 16 5 C 0.20 4.26 10.81 85.04 0.92 5.17 16 6 C -0.21 -4.58 5.11 -20.00 -0.10 -4.68 16 7 C 0.56 16.74 7.33 86.72 0.64 17.38 16 8 O -0.58 -22.67 16.36 -3.97 -0.06 -22.74 16 9 N -0.59 -16.47 2.97 -822.55 -2.44 -18.91 16 10 C 0.09 1.68 4.93 86.36 0.43 2.11 16 11 C -0.12 -2.36 6.08 30.67 0.19 -2.18 16 12 C -0.12 -3.35 5.35 30.62 0.16 -3.19 16 13 C 0.17 6.43 2.92 45.07 0.13 6.56 16 14 H 0.03 1.34 8.08 -2.39 -0.02 1.32 16 15 N -0.73 -36.16 5.12 -322.58 -1.65 -37.81 16 16 C -0.24 -13.67 9.93 84.03 0.83 -12.83 16 17 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 18 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 19 N -0.96 -58.34 13.06 21.65 0.28 -58.06 16 20 Si 0.97 46.97 29.55 68.60 2.03 49.00 16 21 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 22 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 23 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 24 C 0.11 3.93 6.03 86.36 0.52 4.45 16 25 C 0.01 0.16 7.30 22.72 0.17 0.32 16 26 C -0.12 -2.04 6.35 22.47 0.14 -1.90 16 27 Cl -0.03 -0.40 28.53 -2.72 -0.08 -0.48 16 28 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.70 8.10 -2.39 -0.02 0.68 16 30 H 0.06 0.70 8.10 -2.39 -0.02 0.68 16 31 H 0.18 3.62 8.06 -2.91 -0.02 3.59 16 32 H 0.10 1.36 8.13 -2.38 -0.02 1.35 16 33 H 0.10 1.47 4.77 -2.39 -0.01 1.46 16 34 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.06 1.29 8.14 -2.39 -0.02 1.28 16 36 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.38 19.70 7.80 -92.71 -0.72 18.97 16 39 H 0.25 14.83 8.31 -92.70 -0.77 14.06 16 40 H 0.05 2.38 7.00 -2.38 -0.02 2.37 16 41 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.18 2.27 6.71 -2.91 -0.02 2.25 16 Total: -1.00 -71.71 363.25 1.01 -70.70 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.34 Total: 21.18 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: 6.30 Total: 16.45 kcal Atomic # 7 Polarization: -121.64 SS G_CDS: -6.64 Total: -128.28 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.94 Total: -28.58 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -0.08 Total: -0.48 kcal Total: -71.71 1.01 -70.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000984347.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.770 kcal (2) G-P(sol) polarization free energy of solvation -71.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds