Wall clock time and date at job start Wed Apr 1 2020 00:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35518 * 116.99754 * 2 1 4 4 N 1.32399 * 119.53469 * 0.02562 * 3 2 1 5 5 C 1.31652 * 121.81598 * 179.70584 * 4 3 2 6 6 C 1.39553 * 120.64763 * 0.54488 * 5 4 3 7 7 C 1.47619 * 120.49086 * 179.75185 * 6 5 4 8 8 O 1.21585 * 119.99596 * 179.71768 * 7 6 5 9 9 N 1.34774 * 120.00162 * 359.71469 * 7 6 5 10 10 C 1.46502 * 119.99703 * 179.97438 * 9 7 6 11 11 H 1.09006 * 109.52528 * 35.08613 * 10 9 7 12 12 C 1.53044 * 109.49300 * 155.16356 * 10 9 7 13 13 C 1.53041 * 109.53483 * 181.31588 * 12 10 9 14 14 C 1.53621 * 109.24760 * 298.51635 * 13 12 10 15 15 N 1.46923 * 108.54299 * 54.85173 * 14 13 12 16 16 C 1.36941 * 120.63018 * 126.37386 * 15 14 13 17 17 H 1.07999 * 119.99897 * 210.81345 * 16 15 14 18 18 C 1.38810 * 119.99765 * 30.81750 * 16 15 14 19 19 N 1.31619 * 119.99693 * 198.72880 * 18 16 15 20 20 Si 1.86800 * 120.00207 * 18.72315 * 18 16 15 21 21 H 1.48501 * 109.47212 * 270.00102 * 20 18 16 22 22 H 1.48499 * 109.47177 * 150.00645 * 20 18 16 23 23 H 1.48495 * 109.47256 * 30.00227 * 20 18 16 24 24 C 1.46922 * 118.74337 * 306.09720 * 15 14 13 25 25 C 1.40248 * 119.01067 * 359.47085 * 6 5 4 26 26 C 1.38080 * 118.34769 * 0.25806 * 25 6 5 27 27 Cl 1.73598 * 120.38415 * 179.97438 * 26 25 6 28 28 H 1.08995 * 109.47081 * 300.00495 * 1 2 3 29 29 H 1.09004 * 109.46767 * 60.00868 * 1 2 3 30 30 H 1.09003 * 109.46894 * 180.02562 * 1 2 3 31 31 H 1.08004 * 119.67774 * 180.29123 * 5 4 3 32 32 H 0.97000 * 119.99959 * 0.02562 * 9 7 6 33 33 H 1.08994 * 109.46292 * 301.33740 * 12 10 9 34 34 H 1.08999 * 109.46003 * 61.31584 * 12 10 9 35 35 H 1.09007 * 109.49802 * 58.59249 * 13 12 10 36 36 H 1.09001 * 109.50079 * 178.68194 * 13 12 10 37 37 H 1.09004 * 109.73553 * 295.12216 * 14 13 12 38 38 H 1.08996 * 109.66903 * 174.54954 * 14 13 12 39 39 H 0.97001 * 120.00345 * 354.95221 * 19 18 16 40 40 H 1.08998 * 109.59143 * 173.64450 * 24 15 14 41 41 H 1.09001 * 109.58916 * 294.07871 * 24 15 14 42 42 H 1.07996 * 120.82432 * 180.27424 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 7 1.3141 2.3120 0.0005 5 6 1.8645 3.5079 0.0063 6 6 3.2526 3.6521 0.0007 7 6 3.8661 4.9948 0.0017 8 8 5.0765 5.1100 0.0020 9 7 3.0846 6.0928 0.0022 10 6 3.6936 7.4253 0.0037 11 1 4.6100 7.4077 -0.5863 12 6 2.7154 8.4345 -0.6019 13 6 3.3631 9.8208 -0.6309 14 6 3.6831 10.2604 0.8059 15 7 4.5079 9.2226 1.4393 16 6 5.7061 9.5418 2.0204 17 1 6.5093 8.8199 2.0332 18 6 5.8882 10.7930 2.5931 19 7 7.1044 11.2440 2.8160 20 14 4.4071 11.8369 3.0473 21 1 4.0331 12.6939 1.8936 22 1 4.7442 12.6943 4.2119 23 1 3.2667 10.9525 3.3972 24 6 4.0199 7.8367 1.4429 25 6 4.0559 2.5025 0.0001 26 6 3.4353 1.2690 -0.0003 27 17 4.3784 -0.1884 -0.0017 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.2357 4.3860 0.0113 32 1 2.1190 6.0008 0.0023 33 1 2.4625 8.1306 -1.6176 34 1 1.8093 8.4699 0.0029 35 1 4.2826 9.7807 -1.2150 36 1 2.6749 10.5346 -1.0837 37 1 2.7572 10.3847 1.3676 38 1 4.2312 11.2024 0.7879 39 1 7.8713 10.6741 2.6486 40 1 4.7904 7.1790 1.8452 41 1 3.1210 7.7674 2.0554 42 1 5.1331 2.5801 0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009599849.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:13 Heat of formation + Delta-G solvation = -44.617464 kcal Electronic energy + Delta-G solvation = -26733.308505 eV Core-core repulsion = 22739.340031 eV Total energy + Delta-G solvation = -3993.968474 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.16467 -40.93064 -39.37726 -38.72601 -37.75868 -36.12605 -34.45199 -33.69908 -32.63638 -32.32146 -30.44568 -28.38277 -26.89556 -25.69080 -24.80420 -23.80210 -23.49566 -21.82804 -21.31455 -19.80450 -19.39387 -18.90663 -18.64512 -17.33598 -17.16918 -16.77851 -16.56984 -16.30597 -15.86414 -15.60076 -15.42046 -15.39098 -15.08369 -14.88924 -14.61541 -14.42446 -14.24184 -13.97677 -13.67002 -13.38472 -13.21626 -12.88147 -12.71016 -12.53846 -12.28748 -12.28111 -12.03425 -11.74171 -11.58125 -11.49502 -11.33712 -11.21737 -11.03561 -10.89705 -10.68256 -10.25979 -9.70386 -9.10533 -8.48263 -5.60255 -0.63151 -0.28021 0.82994 1.42607 1.58493 1.60305 1.75378 1.76817 1.96052 2.48753 2.54939 2.95053 3.10618 3.30907 3.45119 3.58890 3.70661 3.79943 3.86100 4.05207 4.12939 4.28961 4.34349 4.42616 4.43853 4.47228 4.67657 4.69727 4.72380 4.74195 4.89815 4.94671 5.03834 5.07357 5.11049 5.22827 5.33908 5.53768 5.76101 5.86726 6.23372 6.31327 6.46187 6.92246 7.13667 7.53626 8.05297 8.81906 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.020872 B = 0.002439 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.218755 B =11477.217007 C =12129.417084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.301 6.301 3 C 0.354 3.646 4 N -0.526 5.526 5 C 0.202 3.798 6 C -0.218 4.218 7 C 0.565 3.435 8 O -0.581 6.581 9 N -0.696 5.696 10 C 0.139 3.861 11 H 0.052 0.948 12 C -0.106 4.106 13 C -0.127 4.127 14 C 0.109 3.891 15 N -0.619 5.619 16 C -0.334 4.334 17 H 0.013 0.987 18 C -0.073 4.073 19 N -0.957 5.957 20 Si 1.116 2.884 21 H -0.261 1.261 22 H -0.310 1.310 23 H -0.260 1.260 24 C 0.142 3.858 25 C 0.020 3.980 26 C -0.128 4.128 27 Cl -0.035 7.035 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.126 0.874 31 H 0.210 0.790 32 H 0.418 0.582 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.043 0.957 36 H 0.101 0.899 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.244 0.756 40 H 0.021 0.979 41 H 0.046 0.954 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.873 -20.742 -9.823 31.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.206 6.206 3 C 0.175 3.825 4 N -0.250 5.250 5 C 0.044 3.956 6 C -0.224 4.224 7 C 0.353 3.647 8 O -0.461 6.461 9 N -0.349 5.349 10 C 0.032 3.968 11 H 0.070 0.930 12 C -0.144 4.144 13 C -0.166 4.166 14 C -0.015 4.015 15 N -0.344 5.344 16 C -0.464 4.464 17 H 0.030 0.970 18 C -0.267 4.267 19 N -0.599 5.599 20 Si 0.940 3.060 21 H -0.187 1.187 22 H -0.239 1.239 23 H -0.185 1.185 24 C 0.015 3.985 25 C -0.006 4.006 26 C -0.158 4.158 27 Cl -0.007 7.007 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.144 0.856 31 H 0.227 0.773 32 H 0.258 0.742 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.062 0.938 36 H 0.120 0.880 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.053 0.947 40 H 0.040 0.960 41 H 0.064 0.936 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -22.212 -19.743 -9.251 31.125 hybrid contribution 2.310 -1.665 -0.253 2.859 sum -19.902 -21.408 -9.504 30.736 Atomic orbital electron populations 1.23290 0.74414 1.05424 1.03262 1.86309 1.25467 1.22970 1.85837 1.19859 0.87656 0.86286 0.88732 1.67639 1.38614 0.98201 1.20577 1.23269 0.90800 0.95017 0.86519 1.20625 0.95570 0.92922 1.13324 1.18146 0.86196 0.84672 0.75720 1.90846 1.16196 1.87439 1.51615 1.45681 1.10659 1.04518 1.74003 1.21333 0.97005 0.81377 0.97048 0.92999 1.21671 0.97664 0.92750 1.02296 1.22003 1.00709 0.97580 0.96351 1.21732 0.94266 0.91711 0.93745 1.44358 1.20792 1.03901 1.65398 1.20033 0.89953 1.02069 1.34338 0.96951 1.27748 1.04215 0.98916 0.95825 1.71022 0.98401 1.36696 1.53788 0.83163 0.72189 0.74403 0.76276 1.18662 1.23858 1.18466 1.21301 0.96918 0.85183 0.95070 1.21517 1.02020 0.88721 0.88375 1.20730 0.89888 0.90009 1.15171 1.98388 1.71327 1.33877 1.97090 0.91491 0.91307 0.85637 0.77329 0.74239 0.88842 0.88726 0.93817 0.88049 0.92922 0.93034 0.94697 0.96049 0.93616 0.82723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.37 113.37 1.18 1.45 16 2 O -0.30 -4.97 9.93 -88.21 -0.88 -5.84 16 3 C 0.35 6.62 7.49 84.85 0.64 7.26 16 4 N -0.53 -8.55 9.18 -307.72 -2.82 -11.38 16 5 C 0.20 2.90 10.71 85.04 0.91 3.81 16 6 C -0.22 -4.56 5.89 -20.00 -0.12 -4.68 16 7 C 0.57 15.67 7.74 86.72 0.67 16.34 16 8 O -0.58 -22.81 16.08 -3.99 -0.06 -22.88 16 9 N -0.70 -15.61 5.03 -445.23 -2.24 -17.85 16 10 C 0.14 4.28 2.60 45.07 0.12 4.40 16 11 H 0.05 2.04 7.58 -2.38 -0.02 2.02 16 12 C -0.11 -2.39 5.35 30.62 0.16 -2.22 16 13 C -0.13 -3.68 6.10 30.82 0.19 -3.49 16 14 C 0.11 4.28 4.23 86.51 0.37 4.64 16 15 N -0.62 -29.70 2.72 -698.27 -1.90 -31.59 16 16 C -0.33 -20.06 9.88 84.03 0.83 -19.23 16 17 H 0.01 0.86 8.06 -2.91 -0.02 0.84 16 18 C -0.07 -4.43 5.24 84.86 0.44 -3.98 16 19 N -0.96 -62.95 13.70 21.65 0.30 -62.66 16 20 Si 1.12 52.50 24.73 68.60 1.70 54.20 16 21 H -0.26 -10.87 6.56 99.48 0.65 -10.22 16 22 H -0.31 -15.01 7.11 99.48 0.71 -14.31 16 23 H -0.26 -11.02 6.80 99.48 0.68 -10.35 16 24 C 0.14 5.72 6.09 86.36 0.53 6.25 16 25 C 0.02 0.44 9.50 22.72 0.22 0.66 16 26 C -0.13 -2.63 6.35 22.47 0.14 -2.49 16 27 Cl -0.04 -0.71 28.52 -2.72 -0.08 -0.78 16 28 H 0.07 0.60 8.10 -2.39 -0.02 0.58 16 29 H 0.07 0.58 8.10 -2.38 -0.02 0.56 16 30 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.21 1.20 6.41 -2.91 -0.02 1.18 16 32 H 0.42 5.12 6.65 -92.71 -0.62 4.50 16 33 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.09 1.63 8.14 -2.39 -0.02 1.62 16 35 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.05 1.82 7.10 -2.38 -0.02 1.81 16 38 H 0.05 2.26 4.76 -2.39 -0.01 2.25 16 39 H 0.24 16.42 8.73 -92.71 -0.81 15.61 16 40 H 0.02 1.01 7.93 -2.39 -0.02 0.99 16 41 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.16 3.71 7.73 -2.91 -0.02 3.69 16 Total: -1.00 -82.66 357.90 0.61 -82.05 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 0.32 Total: 8.04 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 6.27 Total: 8.70 kcal Atomic # 7 Polarization: -116.82 SS G_CDS: -6.66 Total: -123.48 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -0.94 Total: -28.72 kcal Atomic # 14 Polarization: 52.50 SS G_CDS: 1.70 Total: 54.20 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -0.08 Total: -0.78 kcal Total: -82.66 0.61 -82.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009599849.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.434 kcal (2) G-P(sol) polarization free energy of solvation -82.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds