Wall clock time and date at job start Tue Mar 31 2020 23:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35620 * 125.67585 * 2 1 4 4 C 1.35512 * 108.85289 * 180.02562 * 3 2 1 5 5 Cl 1.73607 * 126.07502 * 180.02562 * 4 3 2 6 6 C 1.39891 * 107.84880 * 359.74309 * 4 3 2 7 7 C 1.37632 * 125.67366 * 180.02562 * 2 1 3 8 8 C 1.46671 * 126.22571 * 359.97438 * 7 2 1 9 9 O 1.21697 * 120.00048 * 5.30846 * 8 7 2 10 10 N 1.34777 * 120.00259 * 185.30984 * 8 7 2 11 11 C 1.46496 * 120.00474 * 185.03083 * 10 8 7 12 12 H 1.09004 * 110.77035 * 31.46473 * 11 10 8 13 13 C 1.55063 * 111.04923 * 267.81284 * 11 10 8 14 14 O 1.44602 * 103.66664 * 205.23979 * 13 11 10 15 15 C 1.42833 * 106.73907 * 39.08165 * 14 13 11 16 16 C 1.52647 * 115.95878 * 202.49095 * 15 14 13 17 17 N 1.47221 * 87.78339 * 218.40184 * 16 15 14 18 18 C 1.36937 * 135.97002 * 206.41284 * 17 16 15 19 19 H 1.08002 * 120.00125 * 354.89476 * 18 17 16 20 20 C 1.38811 * 119.99693 * 174.89422 * 18 17 16 21 21 N 1.31620 * 119.99536 * 184.55783 * 20 18 17 22 22 Si 1.86798 * 120.00484 * 4.55071 * 20 18 17 23 23 H 1.48493 * 109.47454 * 174.35900 * 22 20 18 24 24 H 1.48501 * 109.47103 * 294.36224 * 22 20 18 25 25 H 1.48505 * 109.46816 * 54.36147 * 22 20 18 26 26 C 1.47222 * 88.06155 * 26.66975 * 17 16 15 27 27 C 1.53320 * 108.32943 * 334.31257 * 15 14 13 28 28 H 1.09005 * 109.46963 * 274.80410 * 1 2 3 29 29 H 1.08995 * 109.47429 * 34.80172 * 1 2 3 30 30 H 1.09003 * 109.47433 * 154.80500 * 1 2 3 31 31 H 1.08009 * 125.57513 * 0.02562 * 3 2 1 32 32 H 1.08007 * 126.45219 * 180.26415 * 6 4 3 33 33 H 0.97005 * 119.99732 * 5.02258 * 10 8 7 34 34 H 1.08998 * 110.57818 * 323.78617 * 13 11 10 35 35 H 1.08999 * 110.58255 * 86.53851 * 13 11 10 36 36 H 1.09005 * 113.50204 * 103.67716 * 16 15 14 37 37 H 1.09007 * 113.50498 * 333.13123 * 16 15 14 38 38 H 0.96997 * 120.00386 * 4.99677 * 21 20 18 39 39 H 1.09007 * 113.50039 * 88.06271 * 26 17 16 40 40 H 1.08997 * 113.49989 * 218.60184 * 26 17 16 41 41 H 1.08999 * 110.55999 * 120.18539 * 27 15 14 42 42 H 1.08998 * 110.56645 * 243.03224 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2560 1.1017 0.0000 4 6 3.5531 0.7095 -0.0006 5 17 4.9377 1.7567 -0.0002 6 6 3.5781 -0.6892 0.0050 7 6 2.2676 -1.1181 -0.0005 8 6 1.8120 -2.5122 -0.0006 9 8 0.6254 -2.7645 -0.0977 10 7 2.7073 -3.5139 0.1069 11 6 2.2655 -4.9062 -0.0037 12 1 1.4118 -4.9887 -0.6764 13 6 1.9293 -5.4963 1.3903 14 8 2.1176 -6.9191 1.2135 15 6 3.2680 -7.0817 0.3827 16 6 3.3654 -8.4048 -0.3723 17 7 4.8139 -8.3821 -0.1102 18 6 5.9316 -8.8948 -0.7128 19 1 5.8330 -9.5477 -1.5674 20 6 7.1913 -8.5753 -0.2251 21 7 8.2672 -8.9943 -0.8568 22 14 7.3596 -7.5506 1.3277 23 1 8.7915 -7.4649 1.7115 24 1 6.8311 -6.1852 1.0794 25 1 6.5898 -8.1871 2.4266 26 6 4.5340 -7.5723 1.0870 27 6 3.4278 -5.8189 -0.4721 28 1 -0.3633 0.0861 1.0241 29 1 -0.3634 0.8438 -0.5865 30 1 -0.3634 -0.9299 -0.4375 31 1 1.9088 2.1245 0.0004 32 1 4.4582 -1.3152 0.0101 33 1 3.6442 -3.3128 0.2574 34 1 2.6140 -5.1099 2.1452 35 1 0.8970 -5.2747 1.6613 36 1 3.1136 -8.3214 -1.4296 37 1 2.8470 -9.2265 0.1219 38 1 8.1819 -9.4639 -1.7013 39 1 4.3329 -8.1680 1.9774 40 1 5.2686 -6.7862 1.2615 41 1 4.3896 -5.3442 -0.2777 42 1 3.3246 -6.0575 -1.5306 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053863065.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:09 Heat of formation + Delta-G solvation = 39.843234 kcal Electronic energy + Delta-G solvation = -27026.561439 eV Core-core repulsion = 23036.255456 eV Total energy + Delta-G solvation = -3990.305983 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 2.71 seconds Orbital eigenvalues (eV) -41.88388 -40.46207 -39.13295 -36.78013 -36.64791 -34.90813 -33.11483 -32.37668 -31.06145 -29.34841 -28.30240 -26.88394 -25.80253 -25.56769 -23.66676 -21.63211 -21.52225 -20.84581 -20.18561 -19.19927 -18.41026 -17.51125 -16.76710 -16.32513 -16.12308 -15.71109 -15.42662 -15.20330 -14.78880 -14.69540 -14.32803 -14.03956 -13.78317 -13.46669 -13.38191 -13.21761 -13.20278 -13.05696 -12.72324 -12.60356 -11.83014 -11.79728 -11.71034 -11.47198 -11.20686 -11.17292 -10.94052 -10.59150 -10.38887 -10.26785 -9.91459 -9.34022 -9.21610 -9.08243 -8.97476 -8.82436 -8.62634 -7.21885 -6.35619 -3.28992 0.99484 1.75711 2.05444 2.36142 2.96985 3.05145 3.30796 3.41684 3.61116 4.02412 4.29120 4.40726 4.48649 4.54227 4.56914 4.75477 4.78633 4.79509 4.85214 4.87253 5.10031 5.11651 5.13577 5.24518 5.42133 5.52781 5.68945 5.71464 5.87433 5.99887 6.06157 6.10156 6.21536 6.23969 6.26848 6.30594 6.34279 6.51065 6.59175 7.00537 7.17482 7.24994 7.84350 8.18581 8.92301 9.43899 10.28730 11.16064 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012577 B = 0.003017 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.696299 B = 9277.649897 C =10991.769292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.403 5.403 3 C 0.033 3.967 4 C -0.122 4.122 5 Cl -0.047 7.047 6 C -0.126 4.126 7 C -0.037 4.037 8 C 0.594 3.406 9 O -0.545 6.545 10 N -0.703 5.703 11 C 0.113 3.887 12 H 0.109 0.891 13 C 0.039 3.961 14 O -0.355 6.355 15 C 0.061 3.939 16 C 0.134 3.866 17 N -0.620 5.620 18 C -0.301 4.301 19 H 0.085 0.915 20 C -0.023 4.023 21 N -0.933 5.933 22 Si 1.072 2.928 23 H -0.294 1.294 24 H -0.293 1.293 25 H -0.289 1.289 26 C 0.081 3.919 27 C -0.120 4.120 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.113 0.887 31 H 0.179 0.821 32 H 0.156 0.844 33 H 0.407 0.593 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.053 0.947 37 H 0.048 0.952 38 H 0.262 0.738 39 H 0.051 0.949 40 H 0.058 0.942 41 H 0.088 0.912 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.288 22.520 2.682 27.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.075 5.075 3 C -0.105 4.105 4 C -0.155 4.155 5 Cl -0.019 7.019 6 C -0.152 4.152 7 C -0.151 4.151 8 C 0.381 3.619 9 O -0.424 6.424 10 N -0.355 5.355 11 C 0.009 3.991 12 H 0.127 0.873 13 C -0.039 4.039 14 O -0.271 6.271 15 C 0.019 3.981 16 C 0.007 3.993 17 N -0.350 5.350 18 C -0.427 4.427 19 H 0.102 0.898 20 C -0.222 4.222 21 N -0.575 5.575 22 Si 0.906 3.094 23 H -0.222 1.222 24 H -0.221 1.221 25 H -0.216 1.216 26 C -0.045 4.045 27 C -0.158 4.158 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.131 0.869 31 H 0.196 0.804 32 H 0.173 0.827 33 H 0.243 0.757 34 H 0.081 0.919 35 H 0.113 0.887 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.106 0.894 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.230 22.690 3.624 27.567 hybrid contribution -0.374 -0.278 -0.981 1.086 sum -15.604 22.412 2.643 27.437 Atomic orbital electron populations 1.22452 0.75031 1.06369 1.04126 1.43778 1.07187 1.04439 1.52096 1.21740 0.88954 0.92226 1.07535 1.19913 0.88156 0.91424 1.15970 1.98341 1.40471 1.65417 1.97650 1.21300 0.95380 0.93426 1.05118 1.19961 0.89637 0.87974 1.17565 1.16855 0.85620 0.83225 0.76164 1.90779 1.15980 1.84621 1.51047 1.45616 1.11531 1.05323 1.73038 1.22733 0.98718 0.79311 0.98386 0.87299 1.23886 1.02169 0.82034 0.95835 1.88807 1.46805 1.21718 1.69806 1.23556 0.86475 0.96084 0.91936 1.22380 0.86355 0.92894 0.97674 1.45849 1.01280 1.62977 1.24875 1.20135 0.82628 1.27332 1.12564 0.89780 1.25691 0.90345 1.00968 1.05165 1.70915 1.28407 1.40762 1.17415 0.83695 0.74631 0.75310 0.75813 1.22166 1.22142 1.21577 1.23286 0.93732 0.94983 0.92452 1.22652 0.98061 0.93766 1.01304 0.90208 0.89633 0.86858 0.80417 0.82651 0.75681 0.91894 0.88684 0.92868 0.93431 0.92830 0.93114 0.92470 0.89394 0.88916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.39 10.77 59.85 0.64 1.03 16 2 N -0.40 -3.52 3.16 -120.19 -0.38 -3.90 16 3 C 0.03 0.25 11.36 -16.85 -0.19 0.06 16 4 C -0.12 -1.13 6.66 -39.94 -0.27 -1.39 16 5 Cl -0.05 -0.43 29.30 -51.86 -1.52 -1.95 16 6 C -0.13 -1.21 10.34 -39.09 -0.40 -1.62 16 7 C -0.04 -0.39 6.88 -81.99 -0.56 -0.95 16 8 C 0.59 6.91 7.77 -12.86 -0.10 6.81 16 9 O -0.55 -7.48 14.25 5.19 0.07 -7.41 16 10 N -0.70 -7.62 5.17 -53.02 -0.27 -7.89 16 11 C 0.11 1.42 3.47 -65.77 -0.23 1.19 16 12 H 0.11 1.41 7.62 -51.93 -0.40 1.02 16 13 C 0.04 0.52 7.43 38.25 0.28 0.80 16 14 O -0.35 -5.86 11.32 -35.23 -0.40 -6.25 16 15 C 0.06 1.07 1.66 -90.67 -0.15 0.92 16 16 C 0.13 2.66 8.20 -8.05 -0.07 2.60 16 17 N -0.62 -15.02 3.65 -184.63 -0.67 -15.69 16 18 C -0.30 -8.51 11.08 -15.06 -0.17 -8.68 16 19 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 20 C -0.02 -0.67 5.50 -17.43 -0.10 -0.76 16 21 N -0.93 -29.01 13.70 55.49 0.76 -28.25 16 22 Si 1.07 26.33 25.12 -169.99 -4.27 22.06 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 24 H -0.29 -6.52 6.27 56.52 0.35 -6.17 16 25 H -0.29 -6.79 6.69 56.52 0.38 -6.41 16 26 C 0.08 1.72 5.42 -7.90 -0.04 1.67 16 27 C -0.12 -1.77 6.20 -25.50 -0.16 -1.93 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.11 0.94 5.96 -51.93 -0.31 0.63 16 31 H 0.18 0.83 8.06 -52.48 -0.42 0.41 16 32 H 0.16 1.27 7.48 -52.48 -0.39 0.88 16 33 H 0.41 3.75 7.35 -40.82 -0.30 3.45 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.05 1.00 7.91 -51.93 -0.41 0.58 16 37 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 38 H 0.26 8.03 8.73 -40.82 -0.36 7.67 16 39 H 0.05 1.09 8.05 -51.92 -0.42 0.68 16 40 H 0.06 1.22 3.86 -51.93 -0.20 1.02 16 41 H 0.09 1.32 7.46 -51.93 -0.39 0.93 16 42 H 0.09 1.36 7.81 -51.93 -0.41 0.95 16 LS Contribution 357.57 15.07 5.39 5.39 Total: -1.00 -33.65 357.57 -8.20 -41.85 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -5.40 Total: 2.29 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -1.51 Total: -0.25 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: -0.57 Total: -55.73 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.32 Total: -13.66 kcal Atomic # 14 Polarization: 26.33 SS G_CDS: -4.27 Total: 22.06 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.52 Total: -1.95 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.65 -8.20 -41.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053863065.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.695 kcal (2) G-P(sol) polarization free energy of solvation -33.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.71 seconds