Wall clock time and date at job start Tue Mar 31 2020 23:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 116.99992 * 2 1 4 4 O 1.20822 * 120.00282 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99633 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.50788 * 300.05559 * 5 3 2 7 7 C 1.53054 * 109.48828 * 60.10929 * 5 3 2 8 8 N 1.46948 * 109.36454 * 178.36692 * 7 5 3 9 9 C 1.46897 * 111.00244 * 176.81144 * 8 7 5 10 10 C 1.46962 * 110.88230 * 300.68270 * 8 7 5 11 11 C 1.53045 * 109.36517 * 59.31845 * 10 8 7 12 12 N 1.46949 * 109.48717 * 179.97438 * 5 3 2 13 13 C 1.38405 * 111.00227 * 56.84573 * 12 5 3 14 14 N 1.32747 * 119.43724 * 56.87291 * 13 12 5 15 15 C 1.31471 * 121.74375 * 179.74983 * 14 13 12 16 16 C 1.40795 * 120.38721 * 0.52934 * 15 14 13 17 17 C 1.41195 * 120.56845 * 179.72018 * 16 15 14 18 18 H 1.07998 * 119.99590 * 28.46160 * 17 16 15 19 19 C 1.39861 * 120.00110 * 208.46689 * 17 16 15 20 20 N 1.30902 * 120.00276 * 17.60752 * 19 17 16 21 21 Si 1.86799 * 119.99926 * 197.60565 * 19 17 16 22 22 H 1.48495 * 109.47432 * 89.99915 * 21 19 17 23 23 H 1.48503 * 109.47076 * 209.99834 * 21 19 17 24 24 H 1.48503 * 109.47068 * 329.99597 * 21 19 17 25 25 C 1.41282 * 118.86791 * 359.74463 * 16 15 14 26 26 C 1.36672 * 118.40407 * 359.97438 * 25 16 15 27 27 Cl 1.73598 * 120.26444 * 180.02562 * 26 25 16 28 28 H 1.08992 * 109.47389 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46843 * 299.99982 * 1 2 3 30 30 H 1.08994 * 109.46918 * 59.99557 * 1 2 3 31 31 H 1.08999 * 109.48801 * 58.40097 * 7 5 3 32 32 H 1.09000 * 109.50895 * 298.34875 * 7 5 3 33 33 H 1.09003 * 109.47505 * 187.75032 * 9 8 7 34 34 H 1.09001 * 109.47126 * 307.75592 * 9 8 7 35 35 H 1.08998 * 109.47221 * 67.75269 * 9 8 7 36 36 H 1.09001 * 109.48342 * 299.34809 * 10 8 7 37 37 H 1.08999 * 109.48976 * 179.28871 * 10 8 7 38 38 H 1.08995 * 109.48992 * 181.63498 * 11 10 8 39 39 H 1.09002 * 109.50839 * 61.57767 * 11 10 8 40 40 H 1.07997 * 119.80989 * 180.29451 * 15 14 13 41 41 H 0.97004 * 120.00327 * 180.02562 * 20 19 17 42 42 H 1.08002 * 120.80145 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9572 0.7797 0.8884 7 6 4.1134 0.5836 -1.2519 8 7 5.5785 0.6961 -1.2695 9 6 6.1478 -0.0213 -2.4180 10 6 5.9957 2.1053 -1.2693 11 6 5.4488 2.7963 -0.0181 12 7 3.9836 2.6838 -0.0011 13 6 3.4472 3.3603 1.0807 14 7 3.6857 2.9189 2.3097 15 6 3.2031 3.5289 3.3696 16 6 2.4001 4.6766 3.2268 17 6 1.8750 5.3314 4.3622 18 1 2.4019 5.2855 5.3038 19 6 0.6725 6.0392 4.2675 20 7 -0.1363 5.8239 3.2609 21 14 0.2204 7.2919 5.5773 22 1 0.7478 8.6251 5.1904 23 1 -1.2574 7.3625 5.7058 24 1 0.8113 6.8840 6.8773 25 6 2.1283 5.1616 1.9280 26 6 2.6590 4.4936 0.8603 27 17 2.3565 5.0479 -0.7568 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 3.7013 1.0614 -2.1407 32 1 3.8296 -0.4687 -1.2400 33 1 7.2344 -0.0394 -2.3329 34 1 5.7675 -1.0427 -2.4332 35 1 5.8641 0.4858 -3.3402 36 1 5.6050 2.6002 -2.1584 37 1 7.0842 2.1622 -1.2698 38 1 5.7325 3.8486 -0.0305 39 1 5.8608 2.3189 0.8709 40 1 3.4207 3.1454 4.3554 41 1 -0.9702 6.3152 3.1950 42 1 1.5164 6.0396 1.7823 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157771612.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:02 Heat of formation + Delta-G solvation = -31.890939 kcal Electronic energy + Delta-G solvation = -28520.504993 eV Core-core repulsion = 24527.088383 eV Total energy + Delta-G solvation = -3993.416610 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.50534 -39.02255 -38.01658 -36.04025 -35.23763 -35.02431 -33.70094 -31.33781 -30.57663 -29.89907 -27.99568 -27.38618 -25.16978 -24.31507 -23.47295 -22.02136 -21.18907 -20.78234 -19.38400 -17.56142 -17.25200 -16.82852 -16.20321 -15.74049 -15.60185 -15.04382 -14.97965 -14.65677 -14.64330 -14.21414 -14.19517 -13.47856 -13.05927 -12.91231 -12.59593 -12.48617 -12.29018 -12.03843 -11.93733 -11.80436 -11.61033 -11.44020 -11.40058 -11.30899 -11.05306 -10.85574 -10.68235 -10.60152 -10.38170 -10.30314 -9.80116 -9.70209 -9.43250 -8.62152 -8.35430 -8.14743 -7.86843 -7.41785 -6.95487 -4.60729 2.40700 2.74064 2.81333 2.96596 2.98063 3.00935 3.03872 3.48856 3.77726 3.93427 4.33104 4.41568 4.92774 5.04112 5.22535 5.27922 5.36101 5.38045 5.43656 5.45605 5.50612 5.61102 5.64681 5.76964 5.78414 5.79252 5.89988 6.01174 6.11015 6.36723 6.57372 6.63755 6.77942 6.86982 6.96301 6.98554 7.00084 7.07943 7.34874 7.59509 7.74456 8.03149 8.27398 8.34603 8.52861 8.57946 9.34953 9.95306 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.015491 B = 0.004084 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.093007 B = 6854.639267 C = 7379.919903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.369 6.369 3 C 0.456 3.544 4 O -0.455 6.455 5 C 0.109 3.891 6 H 0.093 0.907 7 C 0.070 3.930 8 N -0.542 5.542 9 C 0.027 3.973 10 C 0.055 3.945 11 C 0.069 3.931 12 N -0.445 5.445 13 C 0.140 3.860 14 N -0.475 5.475 15 C -0.014 4.014 16 C 0.081 3.919 17 C -0.445 4.445 18 H 0.088 0.912 19 C 0.074 3.926 20 N -0.776 5.776 21 Si 0.914 3.086 22 H -0.265 1.265 23 H -0.276 1.276 24 H -0.260 1.260 25 C -0.137 4.137 26 C 0.027 3.973 27 Cl -0.096 7.096 28 H 0.095 0.905 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.025 0.975 36 H 0.044 0.956 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.053 0.947 40 H 0.131 0.869 41 H 0.287 0.713 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.113 -7.665 -7.745 12.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.287 6.287 3 C 0.295 3.705 4 O -0.337 6.337 5 C -0.001 4.001 6 H 0.111 0.889 7 C -0.058 4.058 8 N -0.266 5.266 9 C -0.121 4.121 10 C -0.073 4.073 11 C -0.059 4.059 12 N -0.169 5.169 13 C -0.089 4.089 14 N -0.186 5.186 15 C -0.178 4.178 16 C 0.077 3.923 17 C -0.475 4.475 18 H 0.106 0.894 19 C -0.147 4.147 20 N -0.399 5.399 21 Si 0.737 3.263 22 H -0.190 1.190 23 H -0.201 1.201 24 H -0.183 1.183 25 C -0.163 4.163 26 C -0.004 4.004 27 Cl -0.068 7.068 28 H 0.113 0.887 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.148 0.852 41 H 0.098 0.902 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.107 -7.980 -7.928 12.354 hybrid contribution -1.267 1.416 0.355 1.933 sum 3.841 -6.564 -7.573 10.733 Atomic orbital electron populations 1.23140 0.76916 1.02828 1.02582 1.86445 1.22940 1.34120 1.85161 1.23389 0.91553 0.81547 0.73999 1.90794 1.66034 1.35418 1.41415 1.21072 0.87321 0.91623 1.00087 0.88946 1.22062 0.87552 1.00354 0.95865 1.62117 1.08807 1.13381 1.42332 1.22331 1.00330 0.98533 0.90899 1.22266 0.99832 0.87088 0.98076 1.22131 0.86342 1.00531 0.96871 1.59615 1.08935 1.08651 1.39700 1.18224 1.06464 0.97622 0.86547 1.67049 1.20783 1.31813 0.98960 1.22313 1.04975 0.95573 0.94895 1.18434 0.90551 0.90526 0.92839 1.19529 1.04665 1.26350 0.96908 0.89419 1.26010 0.95660 0.96200 0.96791 1.69847 1.08424 1.33128 1.28547 0.86210 0.78193 0.80741 0.81116 1.19000 1.20108 1.18329 1.21171 1.02996 1.01476 0.90683 1.20855 0.98915 0.95967 0.84613 1.98243 1.94993 1.88869 1.24705 0.88698 0.91964 0.92254 0.93669 0.89379 0.91268 0.91403 0.95610 0.93812 0.90219 0.90058 0.92843 0.85151 0.90234 0.85280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.56 101.05 1.07 1.61 16 2 O -0.37 -6.18 10.49 -39.25 -0.41 -6.59 16 3 C 0.46 8.90 6.98 36.01 0.25 9.15 16 4 O -0.46 -10.43 13.00 -18.75 -0.24 -10.67 16 5 C 0.11 1.95 2.27 -68.81 -0.16 1.79 16 6 H 0.09 1.77 7.86 -51.93 -0.41 1.37 16 7 C 0.07 1.01 4.82 -3.77 -0.02 0.99 16 8 N -0.54 -7.10 4.97 -242.76 -1.21 -8.31 16 9 C 0.03 0.27 9.63 60.06 0.58 0.85 16 10 C 0.06 0.74 5.62 -3.77 -0.02 0.72 16 11 C 0.07 1.14 5.47 -3.77 -0.02 1.12 16 12 N -0.45 -8.64 3.73 -166.69 -0.62 -9.26 16 13 C 0.14 3.18 3.67 -155.06 -0.57 2.61 16 14 N -0.48 -11.20 9.56 -11.75 -0.11 -11.32 16 15 C -0.01 -0.33 10.97 -16.74 -0.18 -0.51 16 16 C 0.08 2.09 5.53 -106.65 -0.59 1.50 16 17 C -0.45 -11.08 9.04 -37.85 -0.34 -11.42 16 18 H 0.09 2.05 7.90 -52.49 -0.41 1.64 16 19 C 0.07 1.76 5.13 -17.34 -0.09 1.67 16 20 N -0.78 -19.46 11.25 55.54 0.63 -18.83 16 21 Si 0.91 17.69 29.59 -169.99 -5.03 12.66 16 22 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 23 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 24 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 25 C -0.14 -3.52 8.49 -38.99 -0.33 -3.86 16 26 C 0.03 0.65 5.08 -39.57 -0.20 0.45 16 27 Cl -0.10 -2.11 27.83 -51.86 -1.44 -3.55 16 28 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.96 8.13 -51.93 -0.42 0.53 16 30 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 1.12 8.09 -51.93 -0.42 0.70 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 35 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 36 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 1.36 8.13 -51.93 -0.42 0.94 16 39 H 0.05 0.95 8.04 -51.93 -0.42 0.53 16 40 H 0.13 2.92 8.06 -52.49 -0.42 2.50 16 41 H 0.29 6.54 8.30 -40.82 -0.34 6.21 16 42 H 0.13 3.44 6.56 -52.49 -0.34 3.10 16 LS Contribution 361.13 15.07 5.44 5.44 Total: -1.00 -28.94 361.13 -9.41 -38.35 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -5.78 Total: 5.40 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -0.63 Total: 6.68 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -1.31 Total: -47.72 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.66 Total: -17.26 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.66 kcal Atomic # 17 Polarization: -2.11 SS G_CDS: -1.44 Total: -3.55 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.94 -9.41 -38.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157771612.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.463 kcal (2) G-P(sol) polarization free energy of solvation -28.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds