Wall clock time and date at job start Tue Mar 31 2020 23:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 116.99992 * 2 1 4 4 O 1.20822 * 120.00282 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99633 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.50788 * 300.05559 * 5 3 2 7 7 C 1.53054 * 109.48828 * 60.10929 * 5 3 2 8 8 N 1.46948 * 109.36454 * 178.36692 * 7 5 3 9 9 C 1.46897 * 111.00244 * 176.81144 * 8 7 5 10 10 C 1.46962 * 110.88230 * 300.68270 * 8 7 5 11 11 C 1.53045 * 109.36517 * 59.31845 * 10 8 7 12 12 N 1.46949 * 109.48717 * 179.97438 * 5 3 2 13 13 C 1.38405 * 111.00227 * 56.84573 * 12 5 3 14 14 N 1.32747 * 119.43724 * 56.87291 * 13 12 5 15 15 C 1.31471 * 121.74375 * 179.74983 * 14 13 12 16 16 C 1.40795 * 120.38721 * 0.52934 * 15 14 13 17 17 C 1.41195 * 120.56845 * 179.72018 * 16 15 14 18 18 H 1.07998 * 119.99590 * 28.46160 * 17 16 15 19 19 C 1.39861 * 120.00110 * 208.46689 * 17 16 15 20 20 N 1.30902 * 120.00276 * 17.60752 * 19 17 16 21 21 Si 1.86799 * 119.99926 * 197.60565 * 19 17 16 22 22 H 1.48495 * 109.47432 * 89.99915 * 21 19 17 23 23 H 1.48503 * 109.47076 * 209.99834 * 21 19 17 24 24 H 1.48503 * 109.47068 * 329.99597 * 21 19 17 25 25 C 1.41282 * 118.86791 * 359.74463 * 16 15 14 26 26 C 1.36672 * 118.40407 * 359.97438 * 25 16 15 27 27 Cl 1.73598 * 120.26444 * 180.02562 * 26 25 16 28 28 H 1.08992 * 109.47389 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46843 * 299.99982 * 1 2 3 30 30 H 1.08994 * 109.46918 * 59.99557 * 1 2 3 31 31 H 1.08999 * 109.48801 * 58.40097 * 7 5 3 32 32 H 1.09000 * 109.50895 * 298.34875 * 7 5 3 33 33 H 1.09003 * 109.47505 * 187.75032 * 9 8 7 34 34 H 1.09001 * 109.47126 * 307.75592 * 9 8 7 35 35 H 1.08998 * 109.47221 * 67.75269 * 9 8 7 36 36 H 1.09001 * 109.48342 * 299.34809 * 10 8 7 37 37 H 1.08999 * 109.48976 * 179.28871 * 10 8 7 38 38 H 1.08995 * 109.48992 * 181.63498 * 11 10 8 39 39 H 1.09002 * 109.50839 * 61.57767 * 11 10 8 40 40 H 1.07997 * 119.80989 * 180.29451 * 15 14 13 41 41 H 0.97004 * 120.00327 * 180.02562 * 20 19 17 42 42 H 1.08002 * 120.80145 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9572 0.7797 0.8884 7 6 4.1134 0.5836 -1.2519 8 7 5.5785 0.6961 -1.2695 9 6 6.1478 -0.0213 -2.4180 10 6 5.9957 2.1053 -1.2693 11 6 5.4488 2.7963 -0.0181 12 7 3.9836 2.6838 -0.0011 13 6 3.4472 3.3603 1.0807 14 7 3.6857 2.9189 2.3097 15 6 3.2031 3.5289 3.3696 16 6 2.4001 4.6766 3.2268 17 6 1.8750 5.3314 4.3622 18 1 2.4019 5.2855 5.3038 19 6 0.6725 6.0392 4.2675 20 7 -0.1363 5.8239 3.2609 21 14 0.2204 7.2919 5.5773 22 1 0.7478 8.6251 5.1904 23 1 -1.2574 7.3625 5.7058 24 1 0.8113 6.8840 6.8773 25 6 2.1283 5.1616 1.9280 26 6 2.6590 4.4936 0.8603 27 17 2.3565 5.0479 -0.7568 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 3.7013 1.0614 -2.1407 32 1 3.8296 -0.4687 -1.2400 33 1 7.2344 -0.0394 -2.3329 34 1 5.7675 -1.0427 -2.4332 35 1 5.8641 0.4858 -3.3402 36 1 5.6050 2.6002 -2.1584 37 1 7.0842 2.1622 -1.2698 38 1 5.7325 3.8486 -0.0305 39 1 5.8608 2.3189 0.8709 40 1 3.4207 3.1454 4.3554 41 1 -0.9702 6.3152 3.1950 42 1 1.5164 6.0396 1.7823 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157771612.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:01 Heat of formation + Delta-G solvation = -50.320730 kcal Electronic energy + Delta-G solvation = -28521.304169 eV Core-core repulsion = 24527.088383 eV Total energy + Delta-G solvation = -3994.215786 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.00630 -40.60617 -39.48127 -37.50436 -37.06297 -36.56736 -35.37180 -32.65217 -32.44869 -31.57435 -29.39218 -28.56417 -26.73618 -25.64476 -24.74771 -23.82762 -22.94071 -22.12486 -20.76158 -19.40672 -18.76072 -18.35762 -17.65389 -17.35892 -17.16865 -16.67495 -16.21977 -15.96440 -15.93683 -15.83624 -15.34788 -14.96407 -14.61329 -14.44042 -14.02046 -14.01246 -13.81389 -13.64779 -13.32041 -13.08274 -12.98309 -12.94638 -12.76072 -12.61628 -12.51967 -12.34366 -12.24585 -11.97054 -11.94498 -11.76807 -11.57642 -11.29179 -11.19826 -10.38173 -10.04994 -9.57905 -9.33989 -9.24772 -8.75489 -6.51073 0.57559 0.86498 1.25014 1.37909 1.46677 1.52485 1.62491 1.62897 2.15304 2.58128 2.76979 2.99430 3.48158 3.68459 3.85165 4.03932 4.06138 4.17761 4.28128 4.29481 4.32346 4.37636 4.61132 4.64584 4.65198 4.66956 4.69839 4.75328 4.78016 4.92610 5.02009 5.03860 5.10323 5.15566 5.19594 5.36086 5.70663 5.80624 5.82755 5.99787 6.06750 6.20818 6.46204 6.66760 6.71490 6.85039 7.46076 8.18245 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.015491 B = 0.004084 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.093007 B = 6854.639267 C = 7379.919903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.455 3.545 4 O -0.497 6.497 5 C 0.109 3.891 6 H 0.081 0.919 7 C 0.081 3.919 8 N -0.550 5.550 9 C 0.028 3.972 10 C 0.065 3.935 11 C 0.068 3.932 12 N -0.452 5.452 13 C 0.153 3.847 14 N -0.479 5.479 15 C -0.026 4.026 16 C 0.058 3.942 17 C -0.472 4.472 18 H 0.096 0.904 19 C 0.036 3.964 20 N -0.814 5.814 21 Si 0.989 3.011 22 H -0.261 1.261 23 H -0.270 1.270 24 H -0.251 1.251 25 C -0.154 4.154 26 C 0.014 3.986 27 Cl -0.080 7.080 28 H 0.140 0.860 29 H 0.041 0.959 30 H 0.061 0.939 31 H 0.041 0.959 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.031 0.969 36 H 0.043 0.957 37 H 0.108 0.892 38 H 0.075 0.925 39 H 0.041 0.959 40 H 0.144 0.856 41 H 0.293 0.707 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.986 -8.856 -8.456 13.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.280 6.280 3 C 0.295 3.705 4 O -0.382 6.382 5 C -0.001 4.001 6 H 0.098 0.902 7 C -0.047 4.047 8 N -0.275 5.275 9 C -0.120 4.120 10 C -0.063 4.063 11 C -0.059 4.059 12 N -0.176 5.176 13 C -0.076 4.076 14 N -0.190 5.190 15 C -0.189 4.189 16 C 0.053 3.947 17 C -0.501 4.501 18 H 0.114 0.886 19 C -0.182 4.182 20 N -0.438 5.438 21 Si 0.809 3.191 22 H -0.186 1.186 23 H -0.194 1.194 24 H -0.174 1.174 25 C -0.181 4.181 26 C -0.016 4.016 27 Cl -0.051 7.051 28 H 0.158 0.842 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.126 0.874 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.126 0.874 38 H 0.094 0.906 39 H 0.060 0.940 40 H 0.161 0.839 41 H 0.104 0.896 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.006 -9.215 -8.651 13.993 hybrid contribution -1.530 1.664 0.452 2.305 sum 4.476 -7.550 -8.199 12.011 Atomic orbital electron populations 1.23432 0.75208 1.05509 1.01679 1.86438 1.24547 1.32546 1.84421 1.23787 0.92236 0.81658 0.72775 1.90781 1.67010 1.36841 1.43610 1.21166 0.86610 0.90701 1.01588 0.90174 1.21992 0.88518 1.00809 0.93419 1.62136 1.07784 1.13254 1.44329 1.22425 1.01175 0.98708 0.89646 1.22206 1.01212 0.87068 0.95822 1.22197 0.84502 1.00741 0.98429 1.59668 1.10537 1.09557 1.37816 1.18504 1.05027 0.96959 0.87136 1.67140 1.20926 1.31757 0.99205 1.22555 1.05097 0.95498 0.95788 1.18714 0.91406 0.91315 0.93282 1.19826 1.05554 1.27604 0.97085 0.88640 1.26905 0.94958 0.97407 0.98903 1.69913 1.09083 1.34241 1.30537 0.85088 0.78032 0.77728 0.78282 1.18606 1.19436 1.17394 1.21115 1.03808 1.01592 0.91601 1.21029 0.98974 0.96462 0.85177 1.98229 1.94934 1.88704 1.23280 0.84184 0.94051 0.92030 0.94033 0.87385 0.89643 0.90114 0.95074 0.93870 0.87417 0.90612 0.94013 0.83859 0.89627 0.86984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 10.56 113.37 1.20 2.13 16 2 O -0.36 -11.78 10.49 -51.39 -0.54 -12.32 16 3 C 0.45 17.70 6.98 71.24 0.50 18.20 16 4 O -0.50 -23.23 13.00 21.98 0.29 -22.94 16 5 C 0.11 3.85 2.27 44.18 0.10 3.95 16 6 H 0.08 3.05 7.86 -2.39 -0.02 3.03 16 7 C 0.08 2.16 4.82 86.31 0.42 2.58 16 8 N -0.55 -12.88 4.97 -921.96 -4.58 -17.46 16 9 C 0.03 0.44 9.63 127.69 1.23 1.67 16 10 C 0.06 1.58 5.62 86.31 0.48 2.06 16 11 C 0.07 2.22 5.47 86.31 0.47 2.69 16 12 N -0.45 -17.49 3.73 -681.27 -2.54 -20.03 16 13 C 0.15 7.10 3.67 133.32 0.49 7.59 16 14 N -0.48 -23.08 9.56 -191.08 -1.83 -24.91 16 15 C -0.03 -1.31 10.97 85.37 0.94 -0.38 16 16 C 0.06 3.07 5.53 -21.18 -0.12 2.95 16 17 C -0.47 -24.11 9.04 23.39 0.21 -23.90 16 18 H 0.10 4.55 7.90 -2.91 -0.02 4.53 16 19 C 0.04 1.72 5.13 85.22 0.44 2.16 16 20 N -0.81 -42.01 11.25 21.81 0.25 -41.77 16 21 Si 0.99 36.34 29.59 68.60 2.03 38.37 16 22 H -0.26 -9.39 7.11 99.48 0.71 -8.69 16 23 H -0.27 -9.55 7.11 99.48 0.71 -8.84 16 24 H -0.25 -8.78 7.11 99.48 0.71 -8.07 16 25 C -0.15 -8.29 8.49 22.65 0.19 -8.10 16 26 C 0.01 0.69 5.08 22.28 0.11 0.80 16 27 Cl -0.08 -3.55 27.83 -2.72 -0.08 -3.63 16 28 H 0.14 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.04 1.28 8.13 -2.38 -0.02 1.26 16 30 H 0.06 1.62 8.13 -2.39 -0.02 1.60 16 31 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.11 2.45 8.09 -2.39 -0.02 2.43 16 33 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.08 1.11 8.07 -2.39 -0.02 1.09 16 35 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.08 2.52 8.13 -2.39 -0.02 2.50 16 39 H 0.04 1.46 8.04 -2.39 -0.02 1.44 16 40 H 0.14 6.58 8.06 -2.91 -0.02 6.55 16 41 H 0.29 13.72 8.30 -92.71 -0.77 12.95 16 42 H 0.11 6.29 6.56 -2.91 -0.02 6.27 16 Total: -1.00 -64.74 361.13 0.69 -64.04 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: 1.03 Total: 26.23 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: 6.66 Total: 14.41 kcal Atomic # 7 Polarization: -95.46 SS G_CDS: -8.70 Total: -104.16 kcal Atomic # 8 Polarization: -35.01 SS G_CDS: -0.25 Total: -35.26 kcal Atomic # 14 Polarization: 36.34 SS G_CDS: 2.03 Total: 38.37 kcal Atomic # 17 Polarization: -3.55 SS G_CDS: -0.08 Total: -3.63 kcal Total: -64.74 0.69 -64.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157771612.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.722 kcal (2) G-P(sol) polarization free energy of solvation -64.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds